Wall clock time and date at job start Tue Mar 31 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 114.00286 * 2 1 4 4 C 1.53002 * 112.90549 * 305.70686 * 3 2 1 5 5 C 1.50697 * 109.47514 * 290.64516 * 4 3 2 6 6 O 1.21287 * 119.99496 * 2.34073 * 5 4 3 7 7 N 1.34773 * 120.00474 * 182.33863 * 5 4 3 8 8 C 1.46927 * 120.62816 * 359.72549 * 7 5 4 9 9 C 1.53620 * 108.54651 * 126.36605 * 8 7 5 10 10 C 1.53047 * 109.24196 * 54.85316 * 9 8 7 11 11 C 1.53039 * 109.53617 * 298.51309 * 10 9 8 12 12 H 1.09001 * 109.50287 * 301.40977 * 11 10 9 13 13 C 1.50708 * 109.52363 * 181.32995 * 11 10 9 14 14 H 1.07996 * 120.00207 * 240.14691 * 13 11 10 15 15 C 1.37881 * 119.99554 * 60.14630 * 13 11 10 16 16 N 1.31509 * 120.00089 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99587 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47569 * 59.99949 * 17 15 13 19 19 H 1.48504 * 109.46964 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47312 * 299.99440 * 17 15 13 21 21 C 1.46923 * 120.63173 * 180.02562 * 7 5 4 22 22 C 1.53779 * 113.61716 * 174.45662 * 3 2 1 23 23 C 1.53775 * 87.08055 * 270.88149 * 22 3 2 24 24 C 1.53775 * 87.08388 * 334.56641 * 23 22 3 25 25 H 1.08997 * 109.47421 * 306.22476 * 1 2 3 26 26 H 1.08998 * 109.47148 * 66.23232 * 1 2 3 27 27 H 1.08998 * 109.47323 * 186.22770 * 1 2 3 28 28 H 1.09003 * 109.46948 * 50.64631 * 4 3 2 29 29 H 1.09002 * 109.47358 * 170.64594 * 4 3 2 30 30 H 1.09008 * 109.58510 * 246.19709 * 8 7 5 31 31 H 1.08997 * 109.58720 * 6.62044 * 8 7 5 32 32 H 1.08999 * 109.63563 * 294.86484 * 9 8 7 33 33 H 1.09003 * 109.43468 * 174.72093 * 9 8 7 34 34 H 1.09001 * 109.46294 * 178.49482 * 10 9 8 35 35 H 1.08997 * 109.44891 * 58.52498 * 10 9 8 36 36 H 0.97001 * 119.99899 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.58891 * 353.36914 * 21 7 5 38 38 H 1.08998 * 109.59175 * 113.66053 * 21 7 5 39 39 H 1.08997 * 113.61551 * 25.43373 * 22 3 2 40 40 H 1.09008 * 113.61260 * 156.33269 * 22 3 2 41 41 H 1.09002 * 113.61554 * 89.12120 * 23 22 3 42 42 H 1.09003 * 113.61597 * 220.01307 * 23 22 3 43 43 H 1.09000 * 113.61486 * 270.88139 * 24 23 22 44 44 H 1.09007 * 113.61671 * 139.97911 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5010 2.1840 -1.1444 5 6 2.0284 1.6581 -2.4545 6 8 2.7064 0.6526 -2.4754 7 7 1.7467 2.3050 -3.6028 8 6 0.9217 3.5207 -3.5941 9 6 1.6894 4.6374 -4.3178 10 6 2.0825 4.1549 -5.7160 11 6 3.0019 2.9372 -5.5975 12 1 3.8879 3.2049 -5.0217 13 6 3.4150 2.4823 -6.9736 14 1 3.1692 1.4857 -7.3094 15 6 4.1068 3.3385 -7.8040 16 7 4.4066 4.5519 -7.3949 17 14 4.6182 2.7748 -9.5099 18 1 3.4106 2.4122 -10.2943 19 1 5.3430 3.8735 -10.1976 20 1 5.5073 1.5910 -9.3943 21 6 2.2532 1.8041 -4.8878 22 6 3.5419 1.2977 0.1361 23 6 3.3282 1.3348 1.6585 24 6 1.9703 1.9975 1.3727 25 1 -0.3634 0.6073 0.8290 26 1 -0.3633 0.4142 -0.9405 27 1 -0.3634 -1.0216 0.1115 28 1 0.4112 2.1669 -1.1583 29 1 1.8465 3.2074 -0.9983 30 1 -0.0193 3.3275 -4.1092 31 1 0.7226 3.8199 -2.5651 32 1 2.5877 4.8891 -3.7540 33 1 1.0536 5.5186 -4.4024 34 1 2.6042 4.9540 -6.2426 35 1 1.1853 3.8798 -6.2705 36 1 4.8936 5.1541 -7.9790 37 1 2.9331 0.9704 -4.7127 38 1 1.4186 1.4717 -5.5051 39 1 4.0071 0.3775 -0.2172 40 1 4.0200 2.1939 -0.2597 41 1 3.2453 0.3471 2.1120 42 1 4.0296 1.9845 2.1822 43 1 2.0187 3.0849 1.3150 44 1 1.1666 1.6422 2.0177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:45 Heat of formation + Delta-G solvation = -64.827173 kcal Electronic energy + Delta-G solvation = -23379.740664 eV Core-core repulsion = 20104.688248 eV Total energy + Delta-G solvation = -3275.052416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43849 -38.88408 -36.56561 -35.59944 -33.49865 -31.40843 -30.79372 -29.48942 -27.05509 -25.57448 -25.10325 -24.63734 -22.78937 -21.66414 -19.96272 -19.34651 -18.23450 -16.83723 -16.36364 -16.16144 -15.86655 -15.10086 -14.83555 -14.74794 -14.43435 -14.21474 -13.76575 -13.49443 -13.21932 -12.79239 -12.56942 -12.38570 -12.33355 -11.99594 -11.90436 -11.59467 -11.37343 -10.97424 -10.92516 -10.84495 -10.80863 -10.75589 -10.33976 -10.10289 -9.94963 -9.78152 -9.48981 -9.43242 -9.11064 -8.81470 -8.37943 -7.84521 -6.01751 -4.08711 3.13463 3.31783 3.36001 3.38812 3.51814 3.74459 4.40519 4.44251 4.58092 4.70720 4.85243 5.05381 5.21528 5.25138 5.27188 5.32959 5.34701 5.47768 5.48696 5.62669 5.65474 5.67580 5.72192 5.76316 5.83055 6.10944 6.21486 6.27666 6.28750 6.33003 6.41582 6.48964 6.67651 6.82061 7.00360 7.17606 7.30399 7.33834 7.69004 7.92646 8.05991 8.07851 8.38404 8.74408 8.94984 9.56127 11.03804 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.004081 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.263117 B = 6859.023940 C = 6996.621845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.112 3.888 4 C -0.160 4.160 5 C 0.509 3.491 6 O -0.533 6.533 7 N -0.607 5.607 8 C 0.109 3.891 9 C -0.134 4.134 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.029 0.971 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.118 3.882 22 C -0.113 4.113 23 C -0.137 4.137 24 C -0.163 4.163 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 -0.736 15.823 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.071 3.929 4 C -0.201 4.201 5 C 0.296 3.704 6 O -0.410 6.410 7 N -0.341 5.341 8 C -0.014 4.014 9 C -0.172 4.172 10 C -0.150 4.150 11 C 0.022 3.978 12 H 0.047 0.953 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.003 4.003 22 C -0.150 4.150 23 C -0.175 4.175 24 C -0.201 4.201 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.059 -1.286 15.737 17.727 hybrid contribution -0.134 0.208 -1.075 1.103 sum -8.193 -1.078 14.662 16.831 Atomic orbital electron populations 1.22714 0.82026 1.02420 0.99750 1.88003 1.18782 1.25290 1.94433 1.22220 0.95561 0.83389 0.91710 1.22264 1.02489 1.01268 0.94031 1.20287 0.81001 0.84179 0.84936 1.90689 1.38697 1.24953 1.86633 1.48326 1.51484 1.26563 1.07689 1.21812 0.93832 0.85602 1.00170 1.22076 0.99287 0.96131 0.99752 1.21627 0.98745 1.02040 0.92611 1.18964 0.93572 0.90299 0.94964 0.95315 1.21053 1.35744 0.99474 0.99042 0.92559 1.24928 0.95565 0.94905 0.98353 1.69860 1.40013 1.06320 1.36653 0.86644 0.78773 0.78271 0.84239 1.20272 1.21312 1.20203 1.21964 0.97904 0.99208 0.81199 1.22884 0.93343 1.03753 0.95019 1.22796 0.96639 1.00972 0.97054 1.23572 0.98767 1.00395 0.97347 0.94196 0.94154 0.89777 0.89166 0.88182 0.92072 0.91367 0.92384 0.92583 0.88683 0.94636 0.92941 0.90343 0.92973 0.89740 0.89261 0.89964 0.91458 0.89340 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.30 101.05 1.04 1.34 16 2 O -0.35 -5.10 10.19 -41.41 -0.42 -5.52 16 3 C 0.11 1.47 0.41 -89.81 -0.04 1.43 16 4 C -0.16 -2.11 3.30 -27.88 -0.09 -2.20 16 5 C 0.51 9.20 7.46 -10.99 -0.08 9.11 16 6 O -0.53 -11.56 14.21 -0.63 -0.01 -11.57 16 7 N -0.61 -11.26 2.97 -172.48 -0.51 -11.77 16 8 C 0.11 1.67 6.38 -3.49 -0.02 1.64 16 9 C -0.13 -2.35 6.10 -26.39 -0.16 -2.51 16 10 C -0.11 -2.50 4.96 -26.69 -0.13 -2.64 16 11 C 0.04 1.01 2.25 -91.62 -0.21 0.81 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -14.01 8.56 -34.43 -0.29 -14.30 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.12 2.59 5.66 -3.69 -0.02 2.57 16 22 C -0.11 -1.54 6.19 -25.92 -0.16 -1.70 16 23 C -0.14 -1.47 8.02 -25.92 -0.21 -1.68 16 24 C -0.16 -1.64 7.23 -25.92 -0.19 -1.83 16 25 H 0.04 0.35 7.31 -51.93 -0.38 -0.03 16 26 H 0.04 0.45 6.79 -51.93 -0.35 0.10 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.01 6.36 -51.93 -0.33 0.68 16 29 H 0.10 1.14 7.43 -51.93 -0.39 0.75 16 30 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.07 0.82 5.92 -51.93 -0.31 0.51 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.08 1.86 7.01 -51.93 -0.36 1.50 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 40 H 0.09 1.20 8.10 -51.92 -0.42 0.77 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.76 7.99 -51.93 -0.41 0.35 16 44 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -30.81 339.44 -8.30 -39.11 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.42 Total: 1.12 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.66 Total: -8.29 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.12 Total: -36.11 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.43 Total: -17.09 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.81 -8.30 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.720 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds