Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 114.00286 * 2 1 4 4 C 1.53002 * 112.90549 * 305.70686 * 3 2 1 5 5 C 1.50697 * 109.47514 * 290.64516 * 4 3 2 6 6 O 1.21287 * 119.99496 * 2.34073 * 5 4 3 7 7 N 1.34773 * 120.00474 * 182.33863 * 5 4 3 8 8 C 1.46927 * 120.62816 * 359.72549 * 7 5 4 9 9 C 1.53620 * 108.54651 * 126.36605 * 8 7 5 10 10 C 1.53047 * 109.24196 * 54.85316 * 9 8 7 11 11 C 1.53039 * 109.53617 * 298.51309 * 10 9 8 12 12 H 1.09001 * 109.50287 * 301.40977 * 11 10 9 13 13 C 1.50708 * 109.52363 * 181.32995 * 11 10 9 14 14 H 1.07996 * 120.00207 * 240.14691 * 13 11 10 15 15 C 1.37881 * 119.99554 * 60.14630 * 13 11 10 16 16 N 1.31509 * 120.00089 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99587 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47569 * 59.99949 * 17 15 13 19 19 H 1.48504 * 109.46964 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47312 * 299.99440 * 17 15 13 21 21 C 1.46923 * 120.63173 * 180.02562 * 7 5 4 22 22 C 1.53779 * 113.61716 * 174.45662 * 3 2 1 23 23 C 1.53775 * 87.08055 * 270.88149 * 22 3 2 24 24 C 1.53775 * 87.08388 * 334.56641 * 23 22 3 25 25 H 1.08997 * 109.47421 * 306.22476 * 1 2 3 26 26 H 1.08998 * 109.47148 * 66.23232 * 1 2 3 27 27 H 1.08998 * 109.47323 * 186.22770 * 1 2 3 28 28 H 1.09003 * 109.46948 * 50.64631 * 4 3 2 29 29 H 1.09002 * 109.47358 * 170.64594 * 4 3 2 30 30 H 1.09008 * 109.58510 * 246.19709 * 8 7 5 31 31 H 1.08997 * 109.58720 * 6.62044 * 8 7 5 32 32 H 1.08999 * 109.63563 * 294.86484 * 9 8 7 33 33 H 1.09003 * 109.43468 * 174.72093 * 9 8 7 34 34 H 1.09001 * 109.46294 * 178.49482 * 10 9 8 35 35 H 1.08997 * 109.44891 * 58.52498 * 10 9 8 36 36 H 0.97001 * 119.99899 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.58891 * 353.36914 * 21 7 5 38 38 H 1.08998 * 109.59175 * 113.66053 * 21 7 5 39 39 H 1.08997 * 113.61551 * 25.43373 * 22 3 2 40 40 H 1.09008 * 113.61260 * 156.33269 * 22 3 2 41 41 H 1.09002 * 113.61554 * 89.12120 * 23 22 3 42 42 H 1.09003 * 113.61597 * 220.01307 * 23 22 3 43 43 H 1.09000 * 113.61486 * 270.88139 * 24 23 22 44 44 H 1.09007 * 113.61671 * 139.97911 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5010 2.1840 -1.1444 5 6 2.0284 1.6581 -2.4545 6 8 2.7064 0.6526 -2.4754 7 7 1.7467 2.3050 -3.6028 8 6 0.9217 3.5207 -3.5941 9 6 1.6894 4.6374 -4.3178 10 6 2.0825 4.1549 -5.7160 11 6 3.0019 2.9372 -5.5975 12 1 3.8879 3.2049 -5.0217 13 6 3.4150 2.4823 -6.9736 14 1 3.1692 1.4857 -7.3094 15 6 4.1068 3.3385 -7.8040 16 7 4.4066 4.5519 -7.3949 17 14 4.6182 2.7748 -9.5099 18 1 3.4106 2.4122 -10.2943 19 1 5.3430 3.8735 -10.1976 20 1 5.5073 1.5910 -9.3943 21 6 2.2532 1.8041 -4.8878 22 6 3.5419 1.2977 0.1361 23 6 3.3282 1.3348 1.6585 24 6 1.9703 1.9975 1.3727 25 1 -0.3634 0.6073 0.8290 26 1 -0.3633 0.4142 -0.9405 27 1 -0.3634 -1.0216 0.1115 28 1 0.4112 2.1669 -1.1583 29 1 1.8465 3.2074 -0.9983 30 1 -0.0193 3.3275 -4.1092 31 1 0.7226 3.8199 -2.5651 32 1 2.5877 4.8891 -3.7540 33 1 1.0536 5.5186 -4.4024 34 1 2.6042 4.9540 -6.2426 35 1 1.1853 3.8798 -6.2705 36 1 4.8936 5.1541 -7.9790 37 1 2.9331 0.9704 -4.7127 38 1 1.4186 1.4717 -5.5051 39 1 4.0071 0.3775 -0.2172 40 1 4.0200 2.1939 -0.2597 41 1 3.2453 0.3471 2.1120 42 1 4.0296 1.9845 2.1822 43 1 2.0187 3.0849 1.3150 44 1 1.1666 1.6422 2.0177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397590013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = -83.533249 kcal Electronic energy + Delta-G solvation = -23380.551820 eV Core-core repulsion = 20104.688248 eV Total energy + Delta-G solvation = -3275.863572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59472 -40.17972 -38.16115 -36.53495 -35.36396 -33.13146 -32.28136 -30.88917 -27.89618 -27.05940 -26.48340 -26.07595 -23.94601 -23.26951 -21.50587 -20.36483 -19.72881 -18.53624 -17.87343 -17.42650 -16.98552 -16.56919 -16.17089 -16.03347 -15.82820 -15.14175 -15.09429 -14.93682 -14.75695 -14.42651 -14.06328 -13.81977 -13.58297 -13.24789 -13.02847 -12.86984 -12.72476 -12.64689 -12.54467 -12.28690 -11.97846 -11.84939 -11.80765 -11.66235 -11.58095 -11.25336 -11.05849 -10.86093 -10.63275 -10.42474 -10.26322 -9.43503 -8.11677 -6.26912 1.40204 1.41717 1.49161 1.75560 2.14280 2.43148 2.81977 3.14671 3.40868 3.68192 3.70933 3.90548 3.99225 4.14900 4.25593 4.36704 4.37940 4.44547 4.49282 4.54397 4.57099 4.59573 4.65467 4.80229 4.81887 4.87270 4.88281 4.89886 4.98856 5.07456 5.12813 5.19852 5.29524 5.31597 5.42144 5.49363 5.59091 5.60425 5.92941 6.13419 6.34211 6.41361 6.63640 6.82361 7.33443 7.41189 8.91756 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.004081 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.263117 B = 6859.023940 C = 6996.621845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.381 6.381 3 C 0.101 3.899 4 C -0.151 4.151 5 C 0.501 3.499 6 O -0.580 6.580 7 N -0.613 5.613 8 C 0.109 3.891 9 C -0.127 4.127 10 C -0.106 4.106 11 C 0.043 3.957 12 H -0.015 1.015 13 C -0.541 4.541 14 H 0.049 0.951 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.277 1.277 21 C 0.132 3.868 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.142 4.142 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.090 0.910 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 0.660 17.522 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.300 6.300 3 C 0.061 3.939 4 C -0.191 4.191 5 C 0.290 3.710 6 O -0.460 6.460 7 N -0.345 5.345 8 C -0.012 4.012 9 C -0.165 4.165 10 C -0.144 4.144 11 C 0.024 3.976 12 H 0.003 0.997 13 C -0.580 4.580 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.779 3.221 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.203 1.203 21 C 0.009 3.991 22 C -0.167 4.167 23 C -0.167 4.167 24 C -0.179 4.179 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.138 0.862 29 H 0.146 0.854 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.131 0.869 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.392 0.130 17.452 20.312 hybrid contribution 0.640 -0.276 -1.629 1.771 sum -9.752 -0.147 15.824 18.588 Atomic orbital electron populations 1.22897 0.80290 1.03591 1.00637 1.87964 1.20844 1.26511 1.94715 1.22398 0.94584 0.83394 0.93569 1.22343 1.04081 1.02210 0.90430 1.21286 0.79985 0.83435 0.86247 1.90676 1.40702 1.27209 1.87369 1.48421 1.51806 1.27814 1.06496 1.22077 0.93176 0.82996 1.02979 1.21984 0.99876 0.98250 0.96381 1.21421 0.97588 0.99645 0.95763 1.18857 0.92864 0.92403 0.93471 0.99675 1.21425 1.36526 0.99406 1.00622 0.93232 1.25666 0.95496 0.94979 1.01903 1.69994 1.40250 1.07079 1.37787 0.85682 0.78597 0.77810 0.79988 1.19292 1.20584 1.20262 1.21475 0.97172 0.97264 0.83198 1.22952 0.94381 1.01693 0.97672 1.22755 0.97917 1.01370 0.94634 1.23502 0.98288 1.01387 0.94732 0.91438 0.94501 0.89134 0.86167 0.85448 0.90266 0.86618 0.93542 0.89176 0.92001 0.94582 0.92892 0.93416 0.92592 0.93665 0.89540 0.90515 0.89677 0.86928 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.30 113.37 1.17 1.59 16 2 O -0.38 -10.79 10.19 -143.07 -1.46 -12.24 16 3 C 0.10 2.44 0.41 -10.27 0.00 2.44 16 4 C -0.15 -3.48 3.30 29.85 0.10 -3.38 16 5 C 0.50 17.78 7.46 87.66 0.65 18.44 16 6 O -0.58 -26.14 14.21 2.86 0.04 -26.10 16 7 N -0.61 -22.22 2.97 -817.99 -2.43 -24.64 16 8 C 0.11 2.95 6.38 86.51 0.55 3.51 16 9 C -0.13 -4.17 6.10 30.82 0.19 -3.98 16 10 C -0.11 -4.77 4.96 30.62 0.15 -4.62 16 11 C 0.04 2.22 2.25 -11.44 -0.03 2.19 16 12 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 13 C -0.54 -30.62 8.56 25.60 0.22 -30.40 16 14 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 15 C 0.02 1.05 5.30 84.66 0.45 1.50 16 16 N -0.91 -52.55 11.32 21.45 0.24 -52.31 16 17 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 C 0.13 5.98 5.66 86.38 0.49 6.47 16 22 C -0.13 -3.54 6.19 31.12 0.19 -3.34 16 23 C -0.13 -2.53 8.02 31.12 0.25 -2.28 16 24 C -0.14 -2.28 7.23 31.12 0.22 -2.06 16 25 H 0.07 0.92 7.31 -2.39 -0.02 0.91 16 26 H 0.04 0.73 6.79 -2.39 -0.02 0.71 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.12 2.09 6.36 -2.39 -0.02 2.08 16 29 H 0.13 2.27 7.43 -2.39 -0.02 2.25 16 30 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.12 2.09 5.92 -2.39 -0.01 2.08 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 3.20 6.05 -2.39 -0.01 3.19 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 37 H 0.05 2.42 7.01 -2.39 -0.02 2.40 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 40 H 0.09 2.32 8.10 -2.38 -0.02 2.30 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.11 1.31 7.99 -2.39 -0.02 1.30 16 44 H 0.09 1.16 7.48 -2.38 -0.02 1.15 16 Total: -1.00 -72.57 339.44 4.00 -68.57 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.97 Total: 14.50 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.60 Total: -13.93 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.18 Total: -76.95 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.42 Total: -38.34 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.57 4.00 -68.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.965 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds