Wall clock time and date at job start Tue Mar 31 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99829 * 2 1 4 4 C 1.53004 * 112.85090 * 294.63050 * 3 2 1 5 5 C 1.50695 * 109.47157 * 291.34688 * 4 3 2 6 6 O 1.21284 * 120.00049 * 356.28718 * 5 4 3 7 7 N 1.34776 * 119.99969 * 176.28867 * 5 4 3 8 8 C 1.46923 * 120.63374 * 359.97438 * 7 5 4 9 9 C 1.53189 * 108.89360 * 233.56059 * 8 7 5 10 10 C 1.53075 * 109.29797 * 305.57517 * 9 8 7 11 11 C 1.53040 * 109.65747 * 61.14993 * 10 9 8 12 12 H 1.09007 * 109.49583 * 58.65438 * 11 10 9 13 13 C 1.50698 * 109.49917 * 178.75353 * 11 10 9 14 14 H 1.07993 * 120.00201 * 119.84170 * 13 11 10 15 15 C 1.37877 * 119.99641 * 299.84090 * 13 11 10 16 16 N 1.31511 * 120.00150 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 120.00032 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47170 * 89.99432 * 17 15 13 19 19 H 1.48490 * 109.47243 * 209.99978 * 17 15 13 20 20 H 1.48502 * 109.46620 * 329.99821 * 17 15 13 21 21 C 1.46931 * 120.62950 * 180.02562 * 7 5 4 22 22 C 1.53786 * 113.68912 * 65.89686 * 3 2 1 23 23 C 1.53781 * 87.07829 * 89.12838 * 22 3 2 24 24 C 1.53776 * 113.61608 * 163.43500 * 3 2 1 25 25 H 1.08994 * 109.47073 * 56.12022 * 1 2 3 26 26 H 1.08999 * 109.46735 * 176.11885 * 1 2 3 27 27 H 1.08999 * 109.46686 * 296.11609 * 1 2 3 28 28 H 1.08997 * 109.47077 * 171.33938 * 4 3 2 29 29 H 1.09005 * 109.46836 * 51.34802 * 4 3 2 30 30 H 1.09007 * 109.58360 * 353.41691 * 8 7 5 31 31 H 1.08996 * 109.59139 * 113.69684 * 8 7 5 32 32 H 1.09008 * 109.49934 * 65.38636 * 9 8 7 33 33 H 1.08997 * 109.49903 * 185.48125 * 9 8 7 34 34 H 1.09002 * 109.34093 * 301.13553 * 10 9 8 35 35 H 1.08995 * 109.44735 * 181.23965 * 10 9 8 36 36 H 0.97003 * 119.99813 * 180.02562 * 16 15 13 37 37 H 1.08990 * 109.58719 * 246.16008 * 21 7 5 38 38 H 1.08995 * 109.58518 * 6.44266 * 21 7 5 39 39 H 1.09001 * 113.61044 * 203.67227 * 22 3 2 40 40 H 1.08997 * 113.61232 * 334.58196 * 22 3 2 41 41 H 1.09001 * 113.61430 * 270.88237 * 23 22 3 42 42 H 1.08996 * 113.68991 * 139.99530 * 23 22 3 43 43 H 1.09001 * 113.61007 * 25.34830 * 24 3 2 44 44 H 1.09000 * 113.61547 * 156.25103 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7151 2.0873 -1.2817 5 6 2.4468 1.4534 -2.4365 6 8 3.1893 0.5143 -2.2420 7 7 2.2761 1.9299 -3.6856 8 6 1.3796 3.0664 -3.9373 9 6 0.3719 2.6727 -5.0218 10 6 1.1268 2.1781 -6.2582 11 6 1.9572 0.9448 -5.8952 12 1 1.3003 0.1638 -5.5121 13 6 2.6747 0.4428 -7.1217 14 1 3.7535 0.3972 -7.1354 15 6 1.9536 0.0417 -8.2263 16 7 0.6398 0.0968 -8.2095 17 14 2.8429 -0.5813 -9.7464 18 1 3.0294 -2.0509 -9.6433 19 1 2.0378 -0.2679 -10.9541 20 1 4.1686 0.0798 -9.8500 21 6 2.9822 1.3221 -4.8218 22 6 1.7362 2.1038 1.2855 23 6 3.0185 1.4751 1.8557 24 6 3.4946 1.3190 0.4017 25 1 -0.3633 0.5728 -0.8531 26 1 -0.3633 -1.0253 -0.0696 27 1 -0.3633 0.4524 0.9228 28 1 2.0475 3.1185 -1.1629 29 1 0.6430 2.0715 -1.4781 30 1 0.8484 3.3227 -3.0205 31 1 1.9622 3.9239 -4.2738 32 1 -0.2720 1.8763 -4.6483 33 1 -0.2354 3.5384 -5.2857 34 1 1.7870 2.9673 -6.6178 35 1 0.4126 1.9180 -7.0394 36 1 0.1325 -0.1857 -8.9865 37 1 3.6955 2.0361 -5.2330 38 1 3.5103 0.4289 -4.4882 39 1 1.8017 3.1836 1.1512 40 1 0.8297 1.7952 1.8062 41 1 2.8505 0.5258 2.3644 42 1 3.6230 2.1677 2.4411 43 1 4.0076 0.3768 0.2090 44 1 4.0408 2.1841 0.0258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:47 Heat of formation + Delta-G solvation = -64.573695 kcal Electronic energy + Delta-G solvation = -23387.627143 eV Core-core repulsion = 20112.585719 eV Total energy + Delta-G solvation = -3275.041424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43283 -38.90507 -36.57163 -35.52704 -33.49106 -31.40485 -30.80836 -29.50221 -27.07518 -25.53165 -25.08962 -24.63128 -22.82074 -21.66103 -19.90867 -19.40062 -18.20722 -16.82485 -16.40836 -16.14742 -15.86094 -15.08898 -14.98565 -14.54108 -14.47616 -14.13286 -13.69599 -13.50202 -13.23990 -12.86052 -12.65112 -12.37362 -12.28287 -11.99281 -11.84319 -11.57461 -11.32162 -11.04162 -10.97213 -10.85326 -10.82037 -10.71867 -10.33233 -10.11322 -9.94992 -9.77244 -9.44634 -9.42034 -9.09365 -8.79969 -8.37595 -7.83419 -6.01206 -4.08076 3.15243 3.30791 3.37226 3.40229 3.54251 3.76159 4.39365 4.44057 4.55912 4.72245 4.82539 5.05275 5.20059 5.26887 5.28880 5.32415 5.38458 5.45308 5.55813 5.63023 5.64188 5.67599 5.74619 5.78299 5.81529 6.11137 6.17920 6.24720 6.26637 6.33599 6.42750 6.49842 6.68470 6.83174 7.01834 7.18406 7.33031 7.34796 7.69924 7.93774 8.07294 8.09030 8.39174 8.76281 8.95957 9.56795 11.04419 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029060 B = 0.004104 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.303361 B = 6821.500070 C = 6991.290100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.111 3.889 4 C -0.158 4.158 5 C 0.511 3.489 6 O -0.534 6.534 7 N -0.608 5.608 8 C 0.110 3.890 9 C -0.135 4.135 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.028 0.972 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.118 3.882 22 C -0.165 4.165 23 C -0.138 4.138 24 C -0.110 4.110 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.095 0.905 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 7.871 16.503 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.265 6.265 3 C 0.070 3.930 4 C -0.199 4.199 5 C 0.298 3.702 6 O -0.411 6.411 7 N -0.341 5.341 8 C -0.013 4.013 9 C -0.173 4.173 10 C -0.150 4.150 11 C 0.021 3.979 12 H 0.046 0.954 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.003 4.003 22 C -0.203 4.203 23 C -0.176 4.176 24 C -0.147 4.147 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.263 7.159 16.483 18.015 hybrid contribution -0.082 0.030 -1.056 1.060 sum -1.345 7.189 15.427 17.073 Atomic orbital electron populations 1.22758 0.81855 1.02794 0.99678 1.88039 1.18886 1.25092 1.94482 1.22207 0.96017 0.83679 0.91064 1.22214 1.02076 1.00854 0.94715 1.20271 0.82590 0.83784 0.83571 1.90676 1.38451 1.27850 1.84096 1.48319 1.45262 1.33186 1.07310 1.21704 0.92173 0.88522 0.98946 1.22009 0.97526 1.00234 0.97571 1.21625 0.99785 0.97490 0.96059 1.18950 0.92937 0.93811 0.92185 0.95352 1.21085 0.93101 1.42652 0.98365 0.92491 1.24934 0.94825 0.95423 0.98612 1.69874 1.05114 1.47756 1.30106 0.86582 0.79679 0.79270 0.82410 1.20650 1.21268 1.19873 1.21939 0.95559 0.97387 0.85376 1.23583 0.99103 1.00122 0.97474 1.22814 0.96809 1.00987 0.96974 1.22839 0.94067 1.03551 0.94256 0.93951 0.89600 0.94233 0.88362 0.89122 0.91435 0.92056 0.92507 0.92523 0.94635 0.88701 0.93010 0.92946 0.90338 0.89341 0.91064 0.89957 0.91496 0.89700 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.63 101.05 1.07 1.38 16 2 O -0.35 -5.33 10.26 -37.83 -0.39 -5.71 16 3 C 0.11 1.46 0.39 -89.81 -0.03 1.42 16 4 C -0.16 -2.09 3.53 -27.88 -0.10 -2.19 16 5 C 0.51 9.30 7.49 -10.99 -0.08 9.21 16 6 O -0.53 -11.62 14.13 2.95 0.04 -11.58 16 7 N -0.61 -11.35 2.98 -172.81 -0.51 -11.86 16 8 C 0.11 1.69 6.34 -3.71 -0.02 1.67 16 9 C -0.14 -2.39 6.09 -26.60 -0.16 -2.55 16 10 C -0.11 -2.51 4.96 -26.67 -0.13 -2.64 16 11 C 0.04 1.00 2.25 -91.68 -0.21 0.80 16 12 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 13 C -0.51 -14.05 8.56 -34.44 -0.29 -14.35 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 C 0.12 2.61 5.65 -3.73 -0.02 2.59 16 22 C -0.17 -1.62 7.21 -25.92 -0.19 -1.80 16 23 C -0.14 -1.42 8.02 -25.92 -0.21 -1.62 16 24 C -0.11 -1.42 6.10 -25.92 -0.16 -1.58 16 25 H 0.04 0.50 6.51 -51.93 -0.34 0.16 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.38 6.84 -51.93 -0.36 0.02 16 28 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 29 H 0.09 1.10 5.92 -51.93 -0.31 0.79 16 30 H 0.07 0.82 5.91 -51.93 -0.31 0.51 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 2.42 6.05 -51.93 -0.31 2.10 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 39 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 40 H 0.07 0.65 6.81 -51.93 -0.35 0.30 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 44 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -31.14 338.46 -8.13 -39.27 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.35 Total: 1.08 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.63 Total: -8.03 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.11 Total: -36.35 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.35 Total: -17.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.14 -8.13 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.306 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds