Wall clock time and date at job start Tue Mar 31 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00056 * 2 1 4 4 C 1.53000 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.52998 * 115.55029 * 297.47840 * 4 3 2 6 6 C 1.50700 * 109.46980 * 279.68512 * 5 4 3 7 7 O 1.21277 * 120.00069 * 0.51789 * 6 5 4 8 8 N 1.34780 * 119.99523 * 180.52520 * 6 5 4 9 9 C 1.46920 * 120.63371 * 0.02562 * 8 6 5 10 10 C 1.53198 * 108.76530 * 126.36152 * 9 8 6 11 11 C 1.53043 * 109.31237 * 54.65640 * 10 9 8 12 12 C 1.53045 * 109.52601 * 298.61261 * 11 10 9 13 13 H 1.08993 * 109.49714 * 301.39039 * 12 11 10 14 14 C 1.50693 * 109.49751 * 181.32082 * 12 11 10 15 15 H 1.07999 * 120.00883 * 275.26252 * 14 12 11 16 16 C 1.37884 * 119.99803 * 95.26555 * 14 12 11 17 17 N 1.31518 * 120.00176 * 186.77335 * 16 14 12 18 18 Si 1.86800 * 119.99980 * 6.76558 * 16 14 12 19 19 H 1.48501 * 109.46984 * 86.93667 * 18 16 14 20 20 H 1.48498 * 109.47322 * 206.93752 * 18 16 14 21 21 H 1.48502 * 109.47054 * 326.94482 * 18 16 14 22 22 C 1.46930 * 120.62425 * 179.97438 * 8 6 5 23 23 C 1.53002 * 117.51816 * 83.17513 * 4 3 2 24 24 C 1.53003 * 60.00121 * 107.48445 * 23 4 3 25 25 H 1.08998 * 109.47707 * 59.99612 * 1 2 3 26 26 H 1.08998 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46801 * 299.99913 * 1 2 3 28 28 H 1.08996 * 109.47337 * 60.00141 * 3 2 1 29 29 H 1.09003 * 109.47141 * 299.99823 * 3 2 1 30 30 H 1.09000 * 109.47542 * 159.68062 * 5 4 3 31 31 H 1.09000 * 109.47114 * 39.67969 * 5 4 3 32 32 H 1.09000 * 109.58712 * 246.15402 * 9 8 6 33 33 H 1.08992 * 109.58810 * 6.43996 * 9 8 6 34 34 H 1.08994 * 109.50823 * 294.69862 * 10 9 8 35 35 H 1.08997 * 109.48690 * 174.59565 * 10 9 8 36 36 H 1.08995 * 109.46339 * 178.60161 * 11 10 9 37 37 H 1.09001 * 109.46168 * 58.62576 * 11 10 9 38 38 H 0.96991 * 119.99594 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.57967 * 113.84538 * 22 8 6 40 40 H 1.08995 * 109.58969 * 353.42321 * 22 8 6 41 41 H 1.09003 * 117.50027 * 214.97159 * 23 4 3 42 42 H 1.08991 * 117.50062 * 359.97438 * 23 4 3 43 43 H 1.08996 * 117.50071 * 252.51659 * 24 23 4 44 44 H 1.08995 * 117.50300 * 107.48252 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1435 0.4973 1.2236 6 6 4.2228 1.4799 2.3635 7 8 3.8228 2.6151 2.2145 8 7 4.7383 1.0970 3.5485 9 6 5.2275 -0.2746 3.7440 10 6 6.6672 -0.2148 4.2642 11 6 6.7149 0.6546 5.5228 12 6 6.2664 2.0770 5.1792 13 1 6.9163 2.4866 4.4061 14 6 6.3446 2.9405 6.4117 15 1 5.5228 2.9575 7.1123 16 6 7.4654 3.7090 6.6451 17 7 7.5926 4.3582 7.7818 18 14 8.8032 3.8279 5.3468 19 1 8.4756 4.9216 4.3973 20 1 10.1047 4.1143 6.0019 21 1 8.8926 2.5422 4.6090 22 6 4.8227 2.0437 4.6690 23 6 4.2269 0.9683 -1.3483 24 6 4.3339 2.3213 -0.6420 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 5.1445 0.1411 0.9806 31 1 3.5181 -0.3467 1.5144 32 1 4.5972 -0.7872 4.4706 33 1 5.2015 -0.8105 2.7953 34 1 7.3129 0.2165 3.4994 35 1 7.0090 -1.2216 4.5044 36 1 7.7338 0.6786 5.9092 37 1 6.0497 0.2366 6.2784 38 1 8.3808 4.8991 7.9457 39 1 4.1593 1.7203 5.4712 40 1 4.5321 3.0379 4.3300 41 1 5.1149 0.3364 -1.3626 42 1 3.5952 0.9116 -2.2346 43 1 3.7726 3.1550 -1.0637 44 1 5.2923 2.5795 -0.1916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401276107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:55 Heat of formation + Delta-G solvation = -66.341956 kcal Electronic energy + Delta-G solvation = -23047.383747 eV Core-core repulsion = 19772.265645 eV Total energy + Delta-G solvation = -3275.118102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.04143 -38.53736 -37.06153 -36.31582 -33.41743 -31.78735 -30.76123 -29.35374 -28.03691 -25.63670 -25.11908 -24.50042 -22.41981 -21.70202 -20.39909 -19.11466 -18.30681 -17.00121 -16.59890 -16.41870 -16.02063 -15.93961 -15.07334 -14.85303 -14.41835 -14.15931 -13.80557 -13.57384 -13.53057 -12.79337 -12.69930 -12.53730 -12.39256 -12.36999 -11.86618 -11.79874 -11.48903 -11.31291 -11.22052 -10.97359 -10.74290 -10.39772 -10.36081 -10.06175 -9.98976 -9.83619 -9.72499 -9.58973 -9.23854 -8.97808 -8.53503 -8.01222 -6.10916 -4.10223 3.05214 3.27881 3.30418 3.36647 3.38441 3.57403 3.99932 4.40552 4.60504 4.70400 4.81805 4.91076 5.09196 5.13036 5.17182 5.22372 5.26286 5.37501 5.40954 5.47400 5.50568 5.60780 5.61789 5.70711 5.84695 5.90859 5.95270 6.00122 6.06504 6.13162 6.19178 6.28287 6.41534 6.61320 6.73196 6.86029 6.94762 7.03058 7.28174 7.41546 7.74306 7.93439 8.47332 8.64133 8.94184 9.52543 11.02168 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.004365 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.720273 B = 6413.120490 C = 6629.334634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.101 3.899 4 C -0.105 4.105 5 C -0.102 4.102 6 C 0.509 3.491 7 O -0.543 6.543 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.139 4.139 11 C -0.111 4.111 12 C 0.005 3.995 13 H 0.035 0.965 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.265 1.265 22 C 0.123 3.877 23 C -0.171 4.171 24 C -0.145 4.145 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.396 -11.272 -16.466 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.025 3.975 4 C -0.106 4.106 5 C -0.141 4.141 6 C 0.296 3.704 7 O -0.420 6.420 8 N -0.344 5.344 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.149 4.149 12 C -0.015 4.015 13 H 0.053 0.947 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.128 4.128 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.190 1.190 22 C 0.002 3.998 23 C -0.208 4.208 24 C -0.182 4.182 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.384 -10.698 -16.414 21.311 hybrid contribution 0.661 0.284 -0.454 0.850 sum -7.723 -10.414 -16.868 21.275 Atomic orbital electron populations 1.22711 0.81288 1.02523 0.99936 1.87844 1.19327 1.28265 1.95429 1.21958 0.90756 0.84182 1.00639 1.20868 0.92355 1.04058 0.93271 1.21189 1.02217 0.98325 0.92415 1.20539 0.77663 0.88762 0.83386 1.90654 1.48538 1.20521 1.82328 1.48418 1.60496 1.12728 1.12740 1.21687 0.95711 0.83067 1.00860 1.22034 0.95439 1.00313 0.99982 1.21826 1.01345 0.96933 0.94825 1.19478 0.91920 0.93279 0.96824 0.94722 1.20875 1.04117 1.24460 1.05634 0.90755 1.25033 0.97739 0.94960 0.95053 1.69909 1.29124 1.31304 1.23167 0.86864 0.81371 0.79045 0.82320 1.20174 1.21588 1.18965 1.21937 0.99393 0.92578 0.85897 1.23118 1.02442 1.00305 0.94961 1.22880 1.01645 0.91673 1.02052 0.94326 0.89746 0.94064 0.91986 0.93379 0.89143 0.88188 0.91650 0.90767 0.92384 0.91880 0.92645 0.92660 0.92597 0.92416 0.89684 0.88710 0.88765 0.88718 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.71 10.34 -35.23 -0.36 -5.07 16 3 C 0.10 1.25 5.74 37.16 0.21 1.46 16 4 C -0.10 -1.32 1.28 -154.51 -0.20 -1.52 16 5 C -0.10 -1.33 3.97 -27.88 -0.11 -1.44 16 6 C 0.51 8.76 7.59 -10.98 -0.08 8.67 16 7 O -0.54 -11.07 14.42 5.56 0.08 -10.99 16 8 N -0.61 -10.72 2.97 -172.79 -0.51 -11.23 16 9 C 0.11 1.55 6.35 -3.71 -0.02 1.52 16 10 C -0.14 -2.16 6.08 -26.61 -0.16 -2.32 16 11 C -0.11 -2.20 5.15 -26.69 -0.14 -2.34 16 12 C 0.00 0.11 1.94 -91.67 -0.18 -0.07 16 13 H 0.03 0.84 5.16 -51.93 -0.27 0.58 16 14 C -0.51 -14.12 8.86 -34.44 -0.31 -14.43 16 15 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 18 Si 0.88 21.69 27.11 -169.99 -4.61 17.08 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.26 -6.24 6.65 56.52 0.38 -5.87 16 22 C 0.12 2.58 5.70 -3.73 -0.02 2.56 16 23 C -0.17 -1.78 9.90 -26.73 -0.26 -2.05 16 24 C -0.15 -1.79 9.04 -26.73 -0.24 -2.03 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.87 7.78 -51.93 -0.40 0.47 16 29 H 0.05 0.53 8.11 -51.93 -0.42 0.10 16 30 H 0.09 1.04 7.47 -51.93 -0.39 0.65 16 31 H 0.10 1.22 7.62 -51.93 -0.40 0.82 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 40 H 0.08 1.96 7.00 -51.93 -0.36 1.60 16 41 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -31.80 348.94 -7.50 -39.30 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.62 Total: 0.69 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.50 Total: -8.56 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.26 Total: -37.69 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.28 Total: -16.07 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.61 Total: 17.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.80 -7.50 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401276107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.045 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds