Wall clock time and date at job start Tue Mar 31 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99965 * 2 1 4 4 C 1.52998 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.53001 * 115.55226 * 294.86655 * 4 3 2 6 6 C 1.50697 * 109.47324 * 279.26625 * 5 4 3 7 7 O 1.21277 * 120.00146 * 5.55194 * 6 5 4 8 8 N 1.34779 * 120.00038 * 185.56171 * 6 5 4 9 9 C 1.46926 * 120.62640 * 359.97438 * 8 6 5 10 10 C 1.53191 * 108.77289 * 233.33385 * 9 8 6 11 11 C 1.53039 * 109.31469 * 305.36758 * 10 9 8 12 12 C 1.53037 * 109.54048 * 61.36287 * 11 10 9 13 13 H 1.09004 * 109.49320 * 58.58364 * 12 11 10 14 14 C 1.50688 * 109.50180 * 178.68229 * 12 11 10 15 15 H 1.08004 * 120.00070 * 119.99864 * 14 12 11 16 16 C 1.37880 * 120.00207 * 300.00624 * 14 12 11 17 17 N 1.31507 * 120.00229 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99957 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47248 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47337 * 119.99808 * 18 16 14 21 21 H 1.48508 * 109.46837 * 239.99651 * 18 16 14 22 22 C 1.46917 * 120.63140 * 179.71603 * 8 6 5 23 23 C 1.52995 * 117.51853 * 80.57139 * 4 3 2 24 24 C 1.52998 * 60.00396 * 107.48082 * 23 4 3 25 25 H 1.08997 * 109.47355 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47594 * 300.00942 * 1 2 3 27 27 H 1.09007 * 109.46443 * 60.00311 * 1 2 3 28 28 H 1.09008 * 109.47218 * 59.99579 * 3 2 1 29 29 H 1.08994 * 109.47271 * 299.99477 * 3 2 1 30 30 H 1.08999 * 109.46986 * 159.25894 * 5 4 3 31 31 H 1.09004 * 109.46765 * 39.26508 * 5 4 3 32 32 H 1.09000 * 109.58855 * 353.12161 * 9 8 6 33 33 H 1.09002 * 109.58793 * 113.55108 * 9 8 6 34 34 H 1.08995 * 109.49965 * 65.32002 * 10 9 8 35 35 H 1.09003 * 109.49566 * 185.41899 * 10 9 8 36 36 H 1.08995 * 109.46192 * 181.38853 * 11 10 9 37 37 H 1.09007 * 109.45788 * 301.34655 * 11 10 9 38 38 H 0.96997 * 120.00941 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.59018 * 246.45108 * 22 8 6 40 40 H 1.09006 * 109.58803 * 6.87806 * 22 8 6 41 41 H 1.09001 * 117.50015 * 214.97107 * 23 4 3 42 42 H 1.09001 * 117.49783 * 359.97438 * 23 4 3 43 43 H 1.08997 * 117.49656 * 252.51711 * 24 23 4 44 44 H 1.08997 * 117.51833 * 107.47706 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1470 0.5541 1.2534 6 6 4.2389 1.5904 2.3436 7 8 3.7625 2.6927 2.1743 8 7 4.8508 1.2922 3.5069 9 6 5.4325 -0.0389 3.7270 10 6 4.8692 -0.6137 5.0305 11 6 5.1180 0.3772 6.1699 12 6 4.3963 1.6931 5.8706 13 1 3.3292 1.5042 5.7534 14 6 4.6153 2.6569 7.0081 15 1 5.1009 3.6045 6.8272 16 6 4.1957 2.3291 8.2799 17 7 3.6040 1.1755 8.5003 18 14 4.4677 3.5236 9.6901 19 1 5.1501 4.7412 9.1829 20 1 3.1579 3.8993 10.2803 21 1 5.3121 2.8797 10.7283 22 6 4.9538 2.2939 4.5768 23 6 4.2231 0.9070 -1.3375 24 6 4.3321 2.2908 -0.6942 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.6885 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 5.1445 0.1804 1.0221 31 1 3.5186 -0.2711 1.5885 32 1 5.1712 -0.6939 2.8958 33 1 6.5167 0.0440 3.8027 34 1 3.7977 -0.7809 4.9213 35 1 5.3642 -1.5584 5.2554 36 1 4.7401 -0.0401 7.1032 37 1 6.1882 0.5629 6.2624 38 1 3.3084 0.9450 9.3949 39 1 5.9989 2.5674 4.7219 40 1 4.3767 3.1782 4.3063 41 1 5.1112 0.2750 -1.3255 42 1 3.5889 0.8099 -2.2187 43 1 3.7694 3.1043 -1.1521 44 1 5.2915 2.5695 -0.2586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401276109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:58 Heat of formation + Delta-G solvation = -67.074280 kcal Electronic energy + Delta-G solvation = -22997.534404 eV Core-core repulsion = 19722.384546 eV Total energy + Delta-G solvation = -3275.149858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93422 -38.41917 -36.91258 -36.20748 -33.48529 -31.35011 -30.56656 -29.10357 -27.90131 -25.52673 -25.04396 -24.24471 -22.40172 -21.67397 -20.40057 -19.06666 -18.06035 -16.79814 -16.34068 -16.15548 -15.94514 -15.78930 -14.97991 -14.74825 -14.43374 -14.23965 -13.57284 -13.46608 -13.19417 -12.82422 -12.60428 -12.41245 -12.23722 -11.97703 -11.72672 -11.67784 -11.45249 -11.09802 -10.98991 -10.82215 -10.68014 -10.33929 -10.24110 -10.01466 -9.93798 -9.78784 -9.62707 -9.42661 -9.11014 -8.78485 -8.38237 -7.84164 -6.01495 -4.08562 3.14501 3.28738 3.36438 3.38074 3.41935 3.67935 4.07328 4.42969 4.64974 4.75300 4.89468 4.98934 5.20253 5.21982 5.28034 5.32740 5.42318 5.45067 5.56154 5.59363 5.63169 5.66620 5.80431 5.82688 5.89954 5.99610 6.05416 6.12898 6.17898 6.35892 6.43963 6.51161 6.68839 6.84126 7.01700 7.13490 7.19676 7.35698 7.70034 7.93709 8.07503 8.09287 8.38906 8.73763 8.95679 9.56379 11.04009 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.004037 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.939578 B = 6933.633192 C = 7079.036957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.100 3.900 4 C -0.102 4.102 5 C -0.101 4.101 6 C 0.509 3.491 7 O -0.547 6.547 8 N -0.606 5.606 9 C 0.109 3.891 10 C -0.135 4.135 11 C -0.112 4.112 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.118 3.882 23 C -0.171 4.171 24 C -0.148 4.148 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -4.837 -16.701 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.024 3.976 4 C -0.103 4.103 5 C -0.141 4.141 6 C 0.297 3.703 7 O -0.426 6.426 8 N -0.338 5.338 9 C -0.014 4.014 10 C -0.173 4.173 11 C -0.150 4.150 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.003 4.003 23 C -0.208 4.208 24 C -0.185 4.185 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.148 -4.511 -16.633 17.235 hybrid contribution -0.073 0.667 0.970 1.179 sum -0.221 -3.844 -15.663 16.129 Atomic orbital electron populations 1.22716 0.81258 1.02541 0.99941 1.87844 1.19363 1.28213 1.95432 1.21967 0.90705 0.84250 1.00708 1.20868 0.92476 1.04238 0.92689 1.21189 1.02102 0.98228 0.92607 1.20501 0.78058 0.88774 0.82975 1.90634 1.47716 1.23751 1.80465 1.48317 1.55949 1.14214 1.15328 1.21739 0.97528 0.83481 0.98674 1.21998 1.00635 0.98995 0.95682 1.21625 0.98864 0.96283 0.98250 1.18961 0.95801 0.93020 0.90142 0.95361 1.21126 1.38711 1.02720 0.92616 0.92461 1.24935 0.94889 0.95269 0.98721 1.69878 1.40048 1.21383 1.21481 0.86535 0.77874 0.81317 0.82277 1.19731 1.21034 1.21041 1.21950 1.00353 0.90949 0.87090 1.23104 1.02461 0.99560 0.95656 1.22869 1.01541 0.91782 1.02279 0.89744 0.93934 0.94414 0.91788 0.93488 0.89352 0.88057 0.91102 0.92063 0.92375 0.92504 0.88676 0.94634 0.93050 0.92913 0.90385 0.88729 0.88771 0.88775 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.21 10.44 -35.23 -0.37 -5.58 16 3 C 0.10 1.34 5.71 37.16 0.21 1.55 16 4 C -0.10 -1.34 1.26 -154.51 -0.19 -1.53 16 5 C -0.10 -1.40 3.99 -27.88 -0.11 -1.52 16 6 C 0.51 9.17 7.55 -10.99 -0.08 9.09 16 7 O -0.55 -11.47 14.38 5.56 0.08 -11.39 16 8 N -0.61 -11.30 2.97 -172.79 -0.51 -11.81 16 9 C 0.11 1.71 6.30 -3.71 -0.02 1.68 16 10 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C 0.04 0.99 2.25 -91.68 -0.21 0.78 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.05 11.31 55.43 0.63 -24.43 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.12 2.57 5.65 -3.73 -0.02 2.55 16 23 C -0.17 -1.79 9.90 -26.74 -0.26 -2.06 16 24 C -0.15 -1.78 9.14 -26.73 -0.24 -2.02 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.06 0.99 7.63 -51.92 -0.40 0.60 16 29 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.09 1.03 7.47 -51.93 -0.39 0.64 16 31 H 0.10 1.40 7.68 -51.93 -0.40 1.00 16 32 H 0.07 0.90 5.96 -51.93 -0.31 0.59 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.83 7.01 -51.93 -0.36 1.47 16 41 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -30.29 349.35 -8.06 -38.35 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.62 Total: 1.37 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.51 Total: -7.92 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.11 Total: -36.24 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.29 Total: -16.97 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.29 -8.06 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401276109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.726 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds