Wall clock time and date at job start Tue Mar 31 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.46802 * 2 1 4 4 C 1.42904 * 113.99540 * 180.02562 * 3 2 1 5 5 C 1.53787 * 113.61075 * 150.00220 * 4 3 2 6 6 C 1.53774 * 87.08144 * 89.19372 * 5 4 3 7 7 C 1.53003 * 113.61176 * 139.97782 * 6 5 4 8 8 C 1.50703 * 109.47170 * 174.99688 * 7 6 5 9 9 O 1.21281 * 119.99799 * 5.15686 * 8 7 6 10 10 N 1.34777 * 119.99912 * 185.14869 * 8 7 6 11 11 C 1.46502 * 120.00064 * 184.98622 * 10 8 7 12 12 C 1.53001 * 109.47232 * 184.77735 * 11 10 8 13 13 C 1.50694 * 115.54739 * 294.79233 * 12 11 10 14 14 H 1.08006 * 119.99872 * 95.13011 * 13 12 11 15 15 C 1.37876 * 120.00257 * 275.13078 * 13 12 11 16 16 N 1.31522 * 120.00360 * 174.86397 * 15 13 12 17 17 Si 1.86799 * 120.00042 * 354.85696 * 15 13 12 18 18 H 1.48490 * 109.47378 * 275.13057 * 17 15 13 19 19 H 1.48507 * 109.46796 * 35.12753 * 17 15 13 20 20 H 1.48504 * 109.47185 * 155.12531 * 17 15 13 21 21 C 1.52993 * 117.49874 * 80.46248 * 12 11 10 22 22 C 1.52999 * 117.49632 * 149.12403 * 12 11 10 23 23 C 1.53778 * 113.68550 * 247.53002 * 4 3 2 24 24 H 1.09000 * 109.46713 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47412 * 300.00019 * 1 2 3 26 26 H 1.08994 * 109.47160 * 60.00441 * 1 2 3 27 27 H 1.08995 * 109.47563 * 240.00028 * 2 1 3 28 28 H 1.09002 * 109.46997 * 119.99796 * 2 1 3 29 29 H 1.08991 * 112.85305 * 18.79910 * 4 3 2 30 30 H 1.09002 * 113.60933 * 334.64265 * 5 4 3 31 31 H 1.08997 * 113.60775 * 203.74687 * 5 4 3 32 32 H 1.08993 * 113.61758 * 270.79572 * 6 5 4 33 33 H 1.09005 * 109.46693 * 55.00104 * 7 6 5 34 34 H 1.08997 * 109.47431 * 295.00044 * 7 6 5 35 35 H 0.97005 * 119.99873 * 4.99563 * 10 8 7 36 36 H 1.09000 * 109.46932 * 64.77164 * 11 10 8 37 37 H 1.09004 * 109.46856 * 304.78160 * 11 10 8 38 38 H 0.96990 * 120.00304 * 179.97438 * 16 15 13 39 39 H 1.09005 * 117.50057 * 215.00253 * 21 12 11 40 40 H 1.09005 * 117.50173 * 0.02699 * 21 12 11 41 41 H 1.08997 * 117.50113 * 359.97438 * 22 12 11 42 42 H 1.09003 * 117.49165 * 144.97533 * 22 12 11 43 43 H 1.09002 * 113.61471 * 156.32708 * 23 4 3 44 44 H 1.09001 * 113.61761 * 25.42587 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9483 2.7255 -0.7051 6 6 3.8415 3.4321 0.6564 7 6 5.0046 4.3831 0.9462 8 6 4.7463 5.1134 2.2388 9 8 3.7797 4.8283 2.9137 10 7 5.5894 6.0832 2.6450 11 6 5.4010 6.7176 3.9521 12 6 6.4096 7.8563 4.1165 13 6 7.8571 7.4401 4.1675 14 1 8.4551 7.4545 3.2682 15 6 8.4179 7.0408 5.3620 16 7 9.6502 6.5819 5.3892 17 14 7.4278 7.1520 6.9421 18 1 7.5456 8.5210 7.5049 19 1 6.0012 6.8563 6.6541 20 1 7.9492 6.1668 7.9234 21 6 6.0819 9.1924 3.4470 22 6 5.9888 9.0552 4.9688 23 6 4.0047 2.0453 1.3006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9277 0.5458 -0.3246 30 1 3.2626 3.1183 -1.4560 31 1 4.9710 2.6342 -1.0708 32 1 2.8677 3.8871 0.8372 33 1 5.0955 5.1039 0.1335 34 1 5.9290 3.8117 1.0301 35 1 6.3210 6.3613 2.0719 36 1 5.5544 5.9798 4.7395 37 1 4.3887 7.1162 4.0199 38 1 10.0449 6.3014 6.2296 39 1 6.9133 9.7705 3.0435 40 1 5.1475 9.2605 2.8898 41 1 4.9933 9.0329 5.4120 42 1 6.7589 9.5426 5.5667 43 1 5.0430 1.7682 1.4833 44 1 3.3648 1.8892 2.1691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404103432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:13 Heat of formation + Delta-G solvation = -49.557410 kcal Electronic energy + Delta-G solvation = -21980.141090 eV Core-core repulsion = 18705.750821 eV Total energy + Delta-G solvation = -3274.390269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96753 -38.79237 -37.09059 -36.27112 -33.34526 -32.15490 -31.39582 -29.80187 -26.58649 -25.71389 -25.17806 -23.05317 -22.94345 -21.73279 -19.82615 -19.48623 -19.10599 -16.86218 -16.61107 -16.22709 -15.80787 -15.46139 -15.32161 -14.97718 -14.69847 -14.11901 -13.69896 -13.43362 -13.27750 -12.93495 -12.72690 -12.62212 -12.38765 -12.27388 -12.21306 -11.80878 -11.57340 -11.27365 -11.17578 -10.85753 -10.80098 -10.49675 -10.47105 -10.20595 -10.10496 -9.68857 -9.54336 -9.28161 -9.19596 -8.70483 -8.52385 -8.23664 -6.18259 -4.22560 3.19792 3.27960 3.37689 3.42335 3.42990 3.80481 4.38566 4.54385 4.59045 4.76875 4.80224 4.88617 4.91773 5.03774 5.11434 5.13965 5.19785 5.34267 5.44893 5.62801 5.66311 5.67577 5.69578 5.74100 5.77219 5.84825 5.88603 6.01224 6.07503 6.16115 6.23399 6.29492 6.42085 6.50240 6.55114 6.70371 6.99347 7.06597 7.15482 7.19645 7.66686 8.24547 8.39196 8.81926 8.85139 9.45394 10.92972 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026532 B = 0.003220 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.070960 B = 8694.040485 C = 8814.194806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.062 3.938 5 C -0.138 4.138 6 C -0.082 4.082 7 C -0.134 4.134 8 C 0.505 3.495 9 O -0.557 6.557 10 N -0.706 5.706 11 C 0.157 3.843 12 C -0.015 4.015 13 C -0.492 4.492 14 H 0.078 0.922 15 C 0.080 3.920 16 N -0.895 5.895 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.259 1.259 20 H -0.295 1.295 21 C -0.178 4.178 22 C -0.196 4.196 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.404 0.596 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 -9.628 -12.035 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.004 3.996 5 C -0.176 4.176 6 C -0.100 4.100 7 C -0.174 4.174 8 C 0.291 3.709 9 O -0.436 6.436 10 N -0.355 5.355 11 C 0.033 3.967 12 C -0.016 4.016 13 C -0.529 4.529 14 H 0.096 0.904 15 C -0.123 4.123 16 N -0.531 5.531 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.183 1.183 20 H -0.222 1.222 21 C -0.215 4.215 22 C -0.234 4.234 23 C -0.188 4.188 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.239 0.761 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.406 -9.754 -11.408 19.473 hybrid contribution 0.258 0.018 0.813 0.853 sum -12.148 -9.736 -10.595 18.831 Atomic orbital electron populations 1.21746 0.93834 1.02104 1.03232 1.22506 0.95525 0.84026 0.99911 1.87908 1.19960 1.26038 1.94611 1.23027 0.81410 0.97610 0.97530 1.23301 1.01309 0.95582 0.97363 1.22196 0.99077 0.93908 0.94844 1.21704 1.00254 0.99341 0.96058 1.20604 0.82695 0.80083 0.87538 1.90647 1.29307 1.66271 1.57365 1.45913 1.31510 1.37776 1.20328 1.21083 0.96622 0.95076 0.83908 1.19629 0.95884 0.85616 1.00498 1.20190 0.91057 1.45133 0.96512 0.90366 1.24965 0.94632 0.93595 0.99087 1.69889 1.14119 1.42007 1.27104 0.86860 0.81521 0.77735 0.83106 1.20262 1.18326 1.22155 1.22827 1.01058 1.03319 0.94283 1.22980 1.00791 1.05802 0.93796 1.23492 1.01302 0.96315 0.97742 0.91226 0.91721 0.91910 0.93537 0.93379 0.91191 0.90672 0.88912 0.88094 0.89195 0.88797 0.76129 0.92194 0.93675 0.92454 0.89442 0.90894 0.90763 0.89162 0.89458 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.52 6.50 37.16 0.24 0.76 16 3 O -0.37 -4.45 10.28 -35.23 -0.36 -4.81 16 4 C 0.06 0.67 4.37 -25.92 -0.11 0.56 16 5 C -0.14 -1.40 7.47 -25.92 -0.19 -1.59 16 6 C -0.08 -1.05 3.04 -89.81 -0.27 -1.33 16 7 C -0.13 -1.74 5.54 -27.88 -0.15 -1.89 16 8 C 0.50 9.03 7.82 -10.98 -0.09 8.95 16 9 O -0.56 -11.92 15.80 5.56 0.09 -11.83 16 10 N -0.71 -13.21 5.48 -60.29 -0.33 -13.54 16 11 C 0.16 3.36 5.21 -4.04 -0.02 3.34 16 12 C -0.02 -0.33 0.86 -155.67 -0.13 -0.47 16 13 C -0.49 -12.86 9.19 -34.44 -0.32 -13.17 16 14 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 17 Si 0.88 21.47 24.71 -169.99 -4.20 17.27 16 18 H -0.28 -6.59 7.07 56.52 0.40 -6.19 16 19 H -0.26 -6.13 6.07 56.52 0.34 -5.79 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 C -0.18 -3.43 9.96 -26.70 -0.27 -3.70 16 22 C -0.20 -4.06 7.55 -26.69 -0.20 -4.26 16 23 C -0.15 -1.89 7.46 -25.92 -0.19 -2.08 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.10 1.54 7.76 -51.93 -0.40 1.14 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.11 7.84 -51.93 -0.41 0.70 16 35 H 0.40 6.99 8.34 -40.82 -0.34 6.65 16 36 H 0.06 1.42 6.94 -51.93 -0.36 1.06 16 37 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.09 1.95 7.07 -51.93 -0.37 1.58 16 43 H 0.09 1.00 7.90 -51.93 -0.41 0.59 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -31.15 357.00 -7.88 -39.04 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.80 Total: 7.58 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.43 Total: -13.58 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.44 Total: -39.05 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.27 Total: -16.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.20 Total: 17.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.15 -7.88 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404103432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.520 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds