Wall clock time and date at job start Tue Mar 31 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.46802 * 2 1 4 4 C 1.42904 * 113.99540 * 180.02562 * 3 2 1 5 5 C 1.53787 * 113.61075 * 150.00220 * 4 3 2 6 6 C 1.53774 * 87.08144 * 89.19372 * 5 4 3 7 7 C 1.53003 * 113.61176 * 139.97782 * 6 5 4 8 8 C 1.50703 * 109.47170 * 174.99688 * 7 6 5 9 9 O 1.21281 * 119.99799 * 5.15686 * 8 7 6 10 10 N 1.34777 * 119.99912 * 185.14869 * 8 7 6 11 11 C 1.46502 * 120.00064 * 184.98622 * 10 8 7 12 12 C 1.53001 * 109.47232 * 184.77735 * 11 10 8 13 13 C 1.50694 * 115.54739 * 294.79233 * 12 11 10 14 14 H 1.08006 * 119.99872 * 95.13011 * 13 12 11 15 15 C 1.37876 * 120.00257 * 275.13078 * 13 12 11 16 16 N 1.31522 * 120.00360 * 174.86397 * 15 13 12 17 17 Si 1.86799 * 120.00042 * 354.85696 * 15 13 12 18 18 H 1.48490 * 109.47378 * 275.13057 * 17 15 13 19 19 H 1.48507 * 109.46796 * 35.12753 * 17 15 13 20 20 H 1.48504 * 109.47185 * 155.12531 * 17 15 13 21 21 C 1.52993 * 117.49874 * 80.46248 * 12 11 10 22 22 C 1.52999 * 117.49632 * 149.12403 * 12 11 10 23 23 C 1.53778 * 113.68550 * 247.53002 * 4 3 2 24 24 H 1.09000 * 109.46713 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47412 * 300.00019 * 1 2 3 26 26 H 1.08994 * 109.47160 * 60.00441 * 1 2 3 27 27 H 1.08995 * 109.47563 * 240.00028 * 2 1 3 28 28 H 1.09002 * 109.46997 * 119.99796 * 2 1 3 29 29 H 1.08991 * 112.85305 * 18.79910 * 4 3 2 30 30 H 1.09002 * 113.60933 * 334.64265 * 5 4 3 31 31 H 1.08997 * 113.60775 * 203.74687 * 5 4 3 32 32 H 1.08993 * 113.61758 * 270.79572 * 6 5 4 33 33 H 1.09005 * 109.46693 * 55.00104 * 7 6 5 34 34 H 1.08997 * 109.47431 * 295.00044 * 7 6 5 35 35 H 0.97005 * 119.99873 * 4.99563 * 10 8 7 36 36 H 1.09000 * 109.46932 * 64.77164 * 11 10 8 37 37 H 1.09004 * 109.46856 * 304.78160 * 11 10 8 38 38 H 0.96990 * 120.00304 * 179.97438 * 16 15 13 39 39 H 1.09005 * 117.50057 * 215.00253 * 21 12 11 40 40 H 1.09005 * 117.50173 * 0.02699 * 21 12 11 41 41 H 1.08997 * 117.50113 * 359.97438 * 22 12 11 42 42 H 1.09003 * 117.49165 * 144.97533 * 22 12 11 43 43 H 1.09002 * 113.61471 * 156.32708 * 23 4 3 44 44 H 1.09001 * 113.61761 * 25.42587 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9483 2.7255 -0.7051 6 6 3.8415 3.4321 0.6564 7 6 5.0046 4.3831 0.9462 8 6 4.7463 5.1134 2.2388 9 8 3.7797 4.8283 2.9137 10 7 5.5894 6.0832 2.6450 11 6 5.4010 6.7176 3.9521 12 6 6.4096 7.8563 4.1165 13 6 7.8571 7.4401 4.1675 14 1 8.4551 7.4545 3.2682 15 6 8.4179 7.0408 5.3620 16 7 9.6502 6.5819 5.3892 17 14 7.4278 7.1520 6.9421 18 1 7.5456 8.5210 7.5049 19 1 6.0012 6.8563 6.6541 20 1 7.9492 6.1668 7.9234 21 6 6.0819 9.1924 3.4470 22 6 5.9888 9.0552 4.9688 23 6 4.0047 2.0453 1.3006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9277 0.5458 -0.3246 30 1 3.2626 3.1183 -1.4560 31 1 4.9710 2.6342 -1.0708 32 1 2.8677 3.8871 0.8372 33 1 5.0955 5.1039 0.1335 34 1 5.9290 3.8117 1.0301 35 1 6.3210 6.3613 2.0719 36 1 5.5544 5.9798 4.7395 37 1 4.3887 7.1162 4.0199 38 1 10.0449 6.3014 6.2296 39 1 6.9133 9.7705 3.0435 40 1 5.1475 9.2605 2.8898 41 1 4.9933 9.0329 5.4120 42 1 6.7589 9.5426 5.5667 43 1 5.0430 1.7682 1.4833 44 1 3.3648 1.8892 2.1691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404103432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:12 Heat of formation + Delta-G solvation = -70.025711 kcal Electronic energy + Delta-G solvation = -21981.028663 eV Core-core repulsion = 18705.750821 eV Total energy + Delta-G solvation = -3275.277841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08919 -40.05526 -38.70458 -37.21114 -34.93448 -34.22803 -32.19297 -30.85789 -28.31285 -27.00979 -26.58864 -24.02825 -23.72567 -23.34461 -21.31145 -20.89658 -20.36977 -18.56374 -17.76420 -17.52783 -17.02509 -16.68689 -16.57325 -16.41723 -15.94710 -15.57900 -14.92714 -14.84964 -14.66433 -14.37834 -14.08275 -13.89510 -13.67198 -13.32391 -13.13876 -13.10417 -12.91652 -12.67212 -12.32891 -12.19541 -12.11876 -12.01828 -11.76031 -11.55946 -11.43021 -11.04294 -11.00422 -10.82660 -10.66133 -10.37100 -10.28124 -9.85175 -8.31242 -6.36795 1.32834 1.38473 1.47900 1.78176 2.35127 2.38257 2.68562 3.03790 3.24584 3.63542 3.70058 3.87871 3.95049 4.01500 4.12841 4.19656 4.29781 4.34403 4.41100 4.43759 4.49499 4.53354 4.62062 4.69885 4.76147 4.84111 4.84634 4.88102 4.93304 4.96282 5.02166 5.07659 5.19251 5.24531 5.28205 5.34737 5.46696 5.50386 5.63793 5.69585 6.28212 6.38972 6.70234 6.80224 7.33584 7.41404 8.83062 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026532 B = 0.003220 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.070960 B = 8694.040485 C = 8814.194806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.393 6.393 4 C 0.064 3.936 5 C -0.121 4.121 6 C -0.089 4.089 7 C -0.123 4.123 8 C 0.500 3.500 9 O -0.596 6.596 10 N -0.706 5.706 11 C 0.166 3.834 12 C -0.038 4.038 13 C -0.479 4.479 14 H 0.050 0.950 15 C 0.029 3.971 16 N -0.941 5.941 17 Si 0.928 3.072 18 H -0.264 1.264 19 H -0.249 1.249 20 H -0.302 1.302 21 C -0.150 4.150 22 C -0.197 4.197 23 C -0.158 4.158 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.411 0.589 36 H 0.030 0.970 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -9.666 -13.665 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.313 6.313 4 C 0.006 3.994 5 C -0.158 4.158 6 C -0.108 4.108 7 C -0.162 4.162 8 C 0.289 3.711 9 O -0.478 6.478 10 N -0.356 5.356 11 C 0.041 3.959 12 C -0.039 4.039 13 C -0.516 4.516 14 H 0.068 0.932 15 C -0.169 4.169 16 N -0.580 5.580 17 Si 0.754 3.246 18 H -0.189 1.189 19 H -0.173 1.173 20 H -0.230 1.230 21 C -0.187 4.187 22 C -0.235 4.235 23 C -0.196 4.196 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.247 0.753 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.319 -9.776 -13.064 21.062 hybrid contribution 0.521 0.026 1.274 1.377 sum -12.797 -9.750 -11.790 19.946 Atomic orbital electron populations 1.21774 0.93209 1.03354 1.02458 1.22719 0.96171 0.82987 1.00817 1.87885 1.20827 1.27925 1.94656 1.23095 0.81096 0.99031 0.96214 1.23270 1.02918 0.94039 0.95543 1.22147 0.97463 0.93856 0.97326 1.21756 1.00946 0.99616 0.93924 1.21500 0.81577 0.79391 0.88677 1.90631 1.30974 1.67222 1.58954 1.45924 1.32002 1.38109 1.19531 1.20794 0.96522 0.94086 0.84508 1.19457 0.93722 0.86942 1.03759 1.20355 0.92835 1.43394 0.95065 0.93207 1.25658 0.95334 0.93879 1.02073 1.70006 1.15921 1.44411 1.27688 0.86079 0.80718 0.78007 0.79824 1.18947 1.17261 1.22979 1.22859 1.02170 1.00063 0.93640 1.23043 1.01489 1.04136 0.94805 1.23568 1.01559 0.96905 0.97585 0.88980 0.93154 0.91987 0.91638 0.93342 0.88748 0.90403 0.86120 0.91232 0.86241 0.86916 0.75276 0.95166 0.93079 0.92632 0.89280 0.88208 0.88726 0.90139 0.88241 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.84 6.50 71.98 0.47 1.30 16 3 O -0.39 -9.24 10.28 -148.98 -1.53 -10.78 16 4 C 0.06 1.26 4.37 31.12 0.14 1.39 16 5 C -0.12 -2.11 7.47 31.12 0.23 -1.88 16 6 C -0.09 -2.20 3.04 -10.27 -0.03 -2.23 16 7 C -0.12 -2.95 5.54 29.85 0.17 -2.79 16 8 C 0.50 17.53 7.82 87.66 0.69 18.22 16 9 O -0.60 -25.79 15.80 -3.03 -0.05 -25.84 16 10 N -0.71 -25.72 5.48 -463.04 -2.54 -28.25 16 11 C 0.17 6.95 5.21 86.38 0.45 7.40 16 12 C -0.04 -1.61 0.86 -52.93 -0.05 -1.66 16 13 C -0.48 -25.10 9.19 25.60 0.24 -24.86 16 14 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 15 C 0.03 1.62 5.47 84.65 0.46 2.08 16 16 N -0.94 -56.49 13.96 21.45 0.30 -56.20 16 17 Si 0.93 44.24 24.71 68.60 1.70 45.94 16 18 H -0.26 -11.98 7.07 99.48 0.70 -11.28 16 19 H -0.25 -11.36 6.07 99.48 0.60 -10.76 16 20 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 21 C -0.15 -5.38 9.96 30.62 0.30 -5.08 16 22 C -0.20 -7.68 7.55 30.62 0.23 -7.45 16 23 C -0.16 -3.88 7.46 31.12 0.23 -3.65 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.40 7.87 -2.39 -0.02 1.39 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 32 H 0.07 2.17 7.76 -2.39 -0.02 2.15 16 33 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.11 2.34 7.84 -2.39 -0.02 2.33 16 35 H 0.41 13.69 8.34 -92.70 -0.77 12.92 16 36 H 0.03 1.43 6.94 -2.39 -0.02 1.42 16 37 H 0.05 2.08 8.06 -2.38 -0.02 2.06 16 38 H 0.26 15.14 8.31 -92.72 -0.77 14.37 16 39 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 40 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 41 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 42 H 0.08 3.31 7.07 -2.39 -0.02 3.29 16 43 H 0.10 2.14 7.90 -2.39 -0.02 2.12 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -69.18 357.00 2.23 -66.94 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.09 Total: 28.87 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 4.27 Total: -20.69 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -2.24 Total: -84.45 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.58 Total: -36.61 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.70 Total: 45.94 kcal Total: -69.18 2.23 -66.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404103432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.083 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds