Wall clock time and date at job start Tue Mar 31 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 110.42181 * 2 1 4 4 O 1.44429 * 110.36555 * 122.30954 * 2 1 3 5 5 C 1.44428 * 105.27149 * 159.34419 * 4 2 1 6 6 H 1.08997 * 110.37719 * 78.31482 * 5 4 2 7 7 C 1.53002 * 110.37060 * 200.54396 * 5 4 2 8 8 C 1.54479 * 104.80331 * 319.48298 * 5 4 2 9 9 H 1.09006 * 110.50946 * 142.62289 * 8 5 4 10 10 C 1.52998 * 110.51272 * 265.33644 * 8 5 4 11 11 C 1.54477 * 110.37280 * 237.68372 * 2 1 3 12 12 H 1.09007 * 110.51162 * 335.84300 * 11 2 1 13 13 C 1.50707 * 110.50644 * 98.41026 * 11 2 1 14 14 O 1.21282 * 119.99453 * 82.59807 * 13 11 2 15 15 N 1.34775 * 119.99826 * 262.59143 * 13 11 2 16 16 C 1.46500 * 119.99529 * 185.08441 * 15 13 11 17 17 C 1.53000 * 109.47058 * 175.89433 * 16 15 13 18 18 C 1.50702 * 115.54782 * 282.01458 * 17 16 15 19 19 H 1.08004 * 119.99612 * 143.84657 * 18 17 16 20 20 C 1.37871 * 120.00065 * 323.84280 * 18 17 16 21 21 N 1.31518 * 120.00279 * 336.60476 * 20 18 17 22 22 Si 1.86806 * 120.00147 * 156.60837 * 20 18 17 23 23 H 1.48498 * 109.46964 * 59.99985 * 22 20 18 24 24 H 1.48495 * 109.47173 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46746 * 300.00156 * 22 20 18 26 26 C 1.52998 * 117.50020 * 136.30593 * 17 16 15 27 27 C 1.52995 * 60.00197 * 252.51125 * 26 17 16 28 28 H 1.08991 * 109.47204 * 185.65142 * 1 2 3 29 29 H 1.09000 * 109.46698 * 305.65611 * 1 2 3 30 30 H 1.08999 * 109.46345 * 65.65263 * 1 2 3 31 31 H 1.08998 * 109.47120 * 58.54373 * 7 5 4 32 32 H 1.08997 * 109.47022 * 178.54299 * 7 5 4 33 33 H 1.09000 * 109.47054 * 298.54277 * 7 5 4 34 34 H 1.09003 * 109.47070 * 174.63949 * 10 8 5 35 35 H 1.09000 * 109.46892 * 294.63826 * 10 8 5 36 36 H 1.08996 * 109.46908 * 54.64246 * 10 8 5 37 37 H 0.96989 * 120.00577 * 5.08498 * 15 13 11 38 38 H 1.09009 * 109.47111 * 295.89215 * 16 15 13 39 39 H 1.08997 * 109.47260 * 55.89409 * 16 15 13 40 40 H 0.96995 * 120.00215 * 185.06681 * 21 20 18 41 41 H 1.09005 * 117.50000 * 0.02562 * 26 17 16 42 42 H 1.09008 * 117.49782 * 145.01734 * 26 17 16 43 43 H 1.08997 * 117.49800 * 252.51271 * 27 26 17 44 44 H 1.08993 * 117.50051 * 107.48782 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 8 2.0327 -0.7237 1.1444 5 6 3.3873 -1.0872 0.7996 6 1 4.0525 -0.2325 0.9222 7 6 3.8609 -2.2577 1.6637 8 6 3.3178 -1.5058 -0.6857 9 1 4.2110 -1.1774 -1.2173 10 6 3.1461 -3.0212 -0.8082 11 6 2.0678 -0.7742 -1.2238 12 1 1.3275 -1.4920 -1.5771 13 6 2.4452 0.1798 -2.3279 14 8 3.5253 0.7310 -2.3100 15 7 1.5823 0.4201 -3.3349 16 6 1.9904 1.2591 -4.4644 17 6 0.8722 1.2881 -5.5083 18 6 0.7710 0.0676 -6.3864 19 1 -0.1976 -0.2939 -6.6990 20 6 1.9147 -0.5875 -6.7908 21 7 3.0626 0.0535 -6.8249 22 14 1.8341 -2.3858 -7.2903 23 1 0.9074 -2.5389 -8.4404 24 1 3.1889 -2.8524 -7.6800 25 1 1.3421 -3.1955 -6.1469 26 6 0.5252 2.6403 -6.1346 27 6 -0.4304 1.9954 -5.1288 28 1 -0.3633 -1.0226 0.1012 29 1 -0.3633 0.5991 0.8350 30 1 -0.3632 0.4237 -0.9363 31 1 3.1949 -3.1084 1.5198 32 1 4.8741 -2.5365 1.3740 33 1 3.8513 -1.9621 2.7128 34 1 3.0037 -3.2873 -1.8556 35 1 4.0362 -3.5199 -0.4244 36 1 2.2762 -3.3360 -0.2319 37 1 0.6913 0.0377 -3.3119 38 1 2.1854 2.2723 -4.1127 39 1 2.8955 0.8497 -4.9129 40 1 3.8524 -0.3845 -7.1785 41 1 1.0939 3.5092 -5.8033 42 1 0.2239 2.6472 -7.1822 43 1 -1.3605 1.5781 -5.5145 44 1 -0.4907 2.4400 -4.1355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404138526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:44 Heat of formation + Delta-G solvation = -72.162340 kcal Electronic energy + Delta-G solvation = -23395.614164 eV Core-core repulsion = 20120.243672 eV Total energy + Delta-G solvation = -3275.370493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47307 -38.35621 -36.68408 -33.89948 -33.25786 -32.51921 -32.29523 -29.07615 -27.66803 -26.11518 -25.24726 -23.61634 -21.72267 -21.26100 -20.05321 -19.55478 -19.21108 -17.49444 -16.28959 -15.94791 -15.38715 -15.23088 -14.84092 -14.59109 -14.26160 -14.00745 -13.66421 -13.35907 -13.09658 -12.66458 -12.53549 -12.45978 -12.09135 -11.91918 -11.83261 -11.76749 -11.65454 -11.50522 -10.98101 -10.89074 -10.74619 -10.57029 -10.55892 -10.47099 -10.34798 -9.67324 -9.65383 -9.36247 -9.11415 -8.83190 -8.30945 -7.96551 -6.20861 -4.16197 3.12061 3.20505 3.28971 3.30465 3.68430 3.97859 4.27735 4.51017 4.71048 4.83554 4.95689 4.98991 5.13523 5.26244 5.30482 5.39054 5.44977 5.48333 5.50643 5.59359 5.71640 5.80846 5.88061 5.94460 5.97752 5.99729 6.03526 6.12867 6.21558 6.25886 6.30316 6.47720 6.55436 6.59911 6.87523 6.90125 6.99619 7.23576 7.37759 7.51773 7.87527 8.26899 8.32820 8.76097 8.89782 9.39877 10.82552 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.005559 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.054343 B = 5036.096826 C = 5860.017347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 H 0.072 0.928 4 O -0.368 6.368 5 C 0.076 3.924 6 H 0.070 0.930 7 C -0.147 4.147 8 C -0.108 4.108 9 H 0.099 0.901 10 C -0.143 4.143 11 C -0.138 4.138 12 H 0.101 0.899 13 C 0.513 3.487 14 O -0.553 6.553 15 N -0.701 5.701 16 C 0.145 3.855 17 C 0.040 3.960 18 C -0.505 4.505 19 H 0.063 0.937 20 C 0.079 3.921 21 N -0.861 5.861 22 Si 0.884 3.116 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.193 4.193 27 C -0.211 4.211 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.396 0.604 38 H 0.032 0.968 39 H 0.115 0.885 40 H 0.266 0.734 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 -3.815 13.237 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.090 0.910 4 O -0.287 6.287 5 C 0.019 3.981 6 H 0.088 0.912 7 C -0.204 4.204 8 C -0.127 4.127 9 H 0.117 0.883 10 C -0.200 4.200 11 C -0.160 4.160 12 H 0.119 0.881 13 C 0.297 3.703 14 O -0.432 6.432 15 N -0.348 5.348 16 C 0.023 3.977 17 C 0.039 3.961 18 C -0.541 4.541 19 H 0.081 0.919 20 C -0.126 4.126 21 N -0.496 5.496 22 Si 0.711 3.289 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.231 4.231 27 C -0.248 4.248 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.229 0.771 38 H 0.050 0.950 39 H 0.133 0.867 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.169 -3.513 13.413 13.914 hybrid contribution -0.402 -0.919 -0.697 1.222 sum -1.571 -4.432 12.715 13.557 Atomic orbital electron populations 1.21846 0.92698 1.03117 1.02812 1.22784 0.95251 0.95325 0.83544 0.90968 1.89097 1.27246 1.74516 1.37877 1.22993 0.84579 0.97244 0.93315 0.91193 1.21884 1.01297 0.97700 0.99489 1.22451 0.98304 0.95978 0.95933 0.88270 1.21897 1.01878 0.94143 1.02069 1.22838 0.99519 0.98016 0.95611 0.88084 1.20104 0.84814 0.82474 0.82873 1.90646 1.23251 1.51583 1.77693 1.46073 1.16292 1.51277 1.21203 1.21244 1.01025 0.91899 0.83547 1.19132 0.89884 0.91731 0.95305 1.20373 0.92771 1.09222 1.31748 0.91861 1.24948 0.95257 0.97869 0.94544 1.69909 1.00992 1.36378 1.42320 0.86777 0.77329 0.85778 0.78984 1.20136 1.21208 1.19964 1.22937 1.04352 0.98653 0.97188 1.22884 0.95717 1.07958 0.98243 0.91467 0.91710 0.90745 0.91320 0.91165 0.92230 0.92309 0.92034 0.92169 0.77066 0.94968 0.86718 0.92364 0.91604 0.90123 0.90499 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.52 37.16 0.35 -1.33 16 2 C 0.09 1.23 3.46 -25.95 -0.09 1.14 16 3 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 4 O -0.37 -5.18 11.04 -35.23 -0.39 -5.57 16 5 C 0.08 0.99 3.83 -25.95 -0.10 0.89 16 6 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.15 -1.49 8.46 37.16 0.31 -1.18 16 8 C -0.11 -1.52 3.14 -89.05 -0.28 -1.80 16 9 H 0.10 1.61 6.99 -51.93 -0.36 1.25 16 10 C -0.14 -1.71 7.71 37.16 0.29 -1.42 16 11 C -0.14 -2.07 2.69 -90.20 -0.24 -2.31 16 12 H 0.10 1.39 7.46 -51.93 -0.39 1.01 16 13 C 0.51 9.82 6.77 -10.98 -0.07 9.75 16 14 O -0.55 -12.54 15.87 5.56 0.09 -12.46 16 15 N -0.70 -13.79 5.54 -60.29 -0.33 -14.12 16 16 C 0.15 3.36 5.31 -4.04 -0.02 3.34 16 17 C 0.04 0.94 1.71 -155.66 -0.27 0.67 16 18 C -0.50 -12.88 8.96 -34.44 -0.31 -13.19 16 19 H 0.06 1.61 7.92 -52.48 -0.42 1.20 16 20 C 0.08 2.06 5.01 -17.82 -0.09 1.97 16 21 N -0.86 -23.48 11.25 55.43 0.62 -22.86 16 22 Si 0.88 20.12 29.60 -169.99 -5.03 15.09 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.19 -4.22 9.88 -26.73 -0.26 -4.49 16 27 C -0.21 -4.22 9.94 -26.73 -0.27 -4.48 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.68 6.38 -51.93 -0.33 0.34 16 32 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.63 7.12 -51.93 -0.37 0.26 16 36 H 0.06 0.67 7.44 -51.93 -0.39 0.28 16 37 H 0.40 6.99 8.48 -40.82 -0.35 6.65 16 38 H 0.03 0.75 7.97 -51.92 -0.41 0.33 16 39 H 0.12 3.08 5.55 -51.93 -0.29 2.79 16 40 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.07 1.38 8.10 -51.93 -0.42 0.95 16 42 H 0.08 1.80 8.14 -51.92 -0.42 1.37 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -28.70 351.81 -8.27 -36.97 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.48 Total: 10.08 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.05 Total: -12.44 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.29 Total: -36.98 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.30 Total: -18.02 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.70 -8.27 -36.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404138526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.188 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds