Wall clock time and date at job start Tue Mar 31 2020 05:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.98744 * 2 1 4 4 O 1.43747 * 109.87611 * 121.07871 * 2 1 3 5 5 C 1.44425 * 106.99809 * 145.91355 * 4 2 1 6 6 H 1.09002 * 110.59770 * 78.47005 * 5 4 2 7 7 C 1.52998 * 110.65356 * 201.48210 * 5 4 2 8 8 C 1.55000 * 103.47086 * 319.99118 * 5 4 2 9 9 H 1.09001 * 110.90473 * 155.19052 * 8 5 4 10 10 C 1.52997 * 110.90439 * 278.75643 * 8 5 4 11 11 C 1.54103 * 109.88156 * 238.91358 * 2 1 3 12 12 H 1.09001 * 110.48605 * 119.86920 * 11 2 1 13 13 C 1.50701 * 110.59916 * 357.27961 * 11 2 1 14 14 O 1.21288 * 119.99676 * 300.24007 * 13 11 2 15 15 N 1.34772 * 120.00130 * 120.24034 * 13 11 2 16 16 C 1.46499 * 119.99964 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47015 * 185.99245 * 16 15 13 18 18 C 1.50694 * 115.55075 * 38.65842 * 17 16 15 19 19 H 1.08005 * 120.00248 * 264.60214 * 18 17 16 20 20 C 1.37874 * 120.00043 * 84.60278 * 18 17 16 21 21 N 1.31517 * 119.99951 * 2.03485 * 20 18 17 22 22 Si 1.86801 * 120.00334 * 182.03032 * 20 18 17 23 23 H 1.48498 * 109.46809 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47097 * 119.99990 * 22 20 18 25 25 H 1.48491 * 109.47364 * 239.99954 * 22 20 18 26 26 C 1.53004 * 117.49775 * 252.95134 * 17 16 15 27 27 C 1.52996 * 59.99841 * 252.51157 * 26 17 16 28 28 H 1.09004 * 109.47010 * 181.08389 * 1 2 3 29 29 H 1.08999 * 109.47445 * 301.08812 * 1 2 3 30 30 H 1.09008 * 109.46989 * 61.08991 * 1 2 3 31 31 H 1.09001 * 109.47262 * 174.07033 * 7 5 4 32 32 H 1.08994 * 109.47008 * 294.06889 * 7 5 4 33 33 H 1.09001 * 109.47121 * 54.07009 * 7 5 4 34 34 H 1.09007 * 109.46708 * 177.09325 * 10 8 5 35 35 H 1.08991 * 109.47454 * 297.09124 * 10 8 5 36 36 H 1.08996 * 109.46861 * 57.09859 * 10 8 5 37 37 H 0.96998 * 119.99901 * 359.97438 * 15 13 11 38 38 H 1.08999 * 109.47535 * 305.99477 * 16 15 13 39 39 H 1.08999 * 109.47035 * 65.99407 * 16 15 13 40 40 H 0.96996 * 120.00114 * 185.01465 * 21 20 18 41 41 H 1.09001 * 117.50008 * 359.97438 * 26 17 16 42 42 H 1.09003 * 117.49727 * 145.02180 * 26 17 16 43 43 H 1.08994 * 117.49940 * 252.50548 * 27 26 17 44 44 H 1.09003 * 117.49817 * 107.49009 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9025 1.0244 0.0000 4 8 2.0187 -0.6978 1.1578 5 6 3.2379 -1.3650 0.7652 6 1 4.0687 -0.6599 0.7365 7 6 3.5470 -2.5259 1.7126 8 6 2.9195 -1.8915 -0.6575 9 1 3.8332 -2.0224 -1.2372 10 6 2.1260 -3.1979 -0.5912 11 6 2.0540 -0.7483 -1.2411 12 1 2.6619 -0.0859 -1.8574 13 6 0.9092 -1.3105 -2.0439 14 8 0.1459 -2.1052 -1.5371 15 7 0.7337 -0.9302 -3.3249 16 6 -0.3788 -1.4772 -4.1054 17 6 -0.2650 -1.0044 -5.5561 18 6 1.1336 -0.9515 -6.1146 19 1 1.6869 -0.0240 -6.0984 20 6 1.7070 -2.0869 -6.6464 21 7 1.0190 -3.2064 -6.7028 22 14 3.4610 -2.0354 -7.2870 23 1 4.0126 -0.6681 -7.1098 24 1 4.2927 -3.0061 -6.5312 25 1 3.4721 -2.3912 -8.7286 26 6 -1.2572 0.0583 -6.0327 27 6 -1.3944 -1.3873 -6.5145 28 1 -0.3633 -1.0275 0.0194 29 1 -0.3634 0.5306 0.8800 30 1 -0.3633 0.4968 -0.8997 31 1 4.4089 -3.0794 1.3400 32 1 3.7678 -2.1353 2.7059 33 1 2.6844 -3.1901 1.7669 34 1 1.8706 -3.5194 -1.6009 35 1 2.7296 -3.9655 -0.1072 36 1 1.2123 -3.0393 -0.0184 37 1 1.3440 -0.2944 -3.7300 38 1 -0.3437 -2.5662 -4.0744 39 1 -1.3228 -1.1319 -3.6838 40 1 1.4447 -4.0224 -7.0090 41 1 -1.9913 0.4204 -5.3128 42 1 -0.8983 0.7962 -6.7503 43 1 -1.1260 -1.6005 -7.5491 44 1 -2.2186 -1.9760 -6.1116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404138536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:49 Heat of formation + Delta-G solvation = -64.397751 kcal Electronic energy + Delta-G solvation = -23646.797560 eV Core-core repulsion = 20371.763766 eV Total energy + Delta-G solvation = -3275.033795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71269 -38.22585 -36.64961 -33.58743 -33.24794 -32.41359 -32.04279 -28.99658 -27.53561 -26.08940 -25.29596 -23.55104 -21.81673 -21.14764 -20.01553 -19.63759 -18.91794 -17.01048 -16.50295 -16.05368 -15.38677 -15.28527 -14.75571 -14.70339 -14.25315 -13.88250 -13.47972 -13.25133 -12.74883 -12.70088 -12.44631 -12.20925 -12.16963 -11.78300 -11.72211 -11.59203 -11.42274 -11.19209 -11.05378 -10.91029 -10.81640 -10.59597 -10.57462 -10.39199 -10.23419 -9.59140 -9.55650 -9.11815 -8.87816 -8.53395 -8.31041 -7.91809 -6.14930 -4.24832 3.17121 3.18761 3.28553 3.29199 3.81384 3.91036 4.28824 4.59837 4.77337 4.97439 4.98852 5.12858 5.18033 5.28278 5.32672 5.47376 5.50306 5.59443 5.64099 5.69486 5.82962 5.93222 5.97297 6.03790 6.12428 6.15370 6.19475 6.27682 6.41420 6.46237 6.50606 6.58725 6.69903 6.81684 6.90173 7.05066 7.07804 7.26081 7.37489 7.51455 7.73392 8.27999 8.39722 8.77738 8.96915 9.43209 10.93122 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.005565 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.101658 B = 5030.022786 C = 5872.587413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 H 0.069 0.931 4 O -0.366 6.366 5 C 0.077 3.923 6 H 0.067 0.933 7 C -0.146 4.146 8 C -0.103 4.103 9 H 0.086 0.914 10 C -0.138 4.138 11 C -0.142 4.142 12 H 0.095 0.905 13 C 0.517 3.483 14 O -0.546 6.546 15 N -0.693 5.693 16 C 0.165 3.835 17 C 0.024 3.976 18 C -0.501 4.501 19 H 0.060 0.940 20 C 0.077 3.923 21 N -0.870 5.870 22 Si 0.886 3.114 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.212 4.212 27 C -0.147 4.147 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.403 0.597 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.261 0.739 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 4.393 11.410 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.087 0.913 4 O -0.286 6.286 5 C 0.020 3.980 6 H 0.085 0.915 7 C -0.203 4.203 8 C -0.122 4.122 9 H 0.104 0.896 10 C -0.195 4.195 11 C -0.164 4.164 12 H 0.113 0.887 13 C 0.302 3.698 14 O -0.426 6.426 15 N -0.342 5.342 16 C 0.041 3.959 17 C 0.023 3.977 18 C -0.538 4.538 19 H 0.078 0.922 20 C -0.128 4.128 21 N -0.506 5.506 22 Si 0.713 3.287 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.249 4.249 27 C -0.185 4.185 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.239 0.761 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.274 3.640 11.815 12.789 hybrid contribution 1.451 0.306 -1.052 1.818 sum 4.725 3.946 10.763 12.399 Atomic orbital electron populations 1.22296 0.93263 1.05461 1.01351 1.22456 0.95833 0.94386 0.83409 0.91289 1.88881 1.39564 1.67479 1.32680 1.23127 0.87753 0.93759 0.93393 0.91485 1.21813 1.02333 0.97371 0.98778 1.22580 0.98356 0.95665 0.95634 0.89600 1.21939 1.00233 0.94160 1.03143 1.22784 0.97109 0.98706 0.97786 0.88690 1.19856 0.85639 0.81951 0.82318 1.90591 1.46672 1.34967 1.70364 1.46045 1.31596 1.45689 1.10902 1.20845 0.85965 0.98396 0.90671 1.19064 0.91631 0.96934 0.90039 1.20328 0.97597 0.95968 1.39941 0.92163 1.24970 0.97388 0.95766 0.94648 1.70000 1.35356 0.99588 1.45660 0.86644 0.85011 0.78188 0.78838 1.19637 1.20947 1.20937 1.23090 1.04511 0.92977 1.04332 1.22464 1.00545 0.94780 1.00672 0.88589 0.92745 0.91734 0.91266 0.92281 0.91071 0.92112 0.93569 0.90057 0.76148 0.91614 0.94624 0.92903 0.91676 0.90457 0.89704 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 8.33 37.15 0.31 -2.15 16 2 C 0.10 1.36 4.05 -26.16 -0.11 1.25 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 O -0.37 -5.36 10.88 -35.23 -0.38 -5.74 16 5 C 0.08 0.95 3.80 -25.68 -0.10 0.86 16 6 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 7 C -0.15 -1.55 8.66 37.16 0.32 -1.23 16 8 C -0.10 -1.43 3.46 -88.61 -0.31 -1.74 16 9 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 10 C -0.14 -2.16 6.55 37.16 0.24 -1.91 16 11 C -0.14 -2.08 3.41 -90.24 -0.31 -2.38 16 12 H 0.09 1.21 7.97 -51.93 -0.41 0.80 16 13 C 0.52 9.36 4.51 -10.99 -0.05 9.31 16 14 O -0.55 -11.18 10.82 5.55 0.06 -11.12 16 15 N -0.69 -13.35 5.28 -60.29 -0.32 -13.67 16 16 C 0.16 3.60 5.77 -4.04 -0.02 3.58 16 17 C 0.02 0.55 1.77 -155.66 -0.28 0.27 16 18 C -0.50 -12.36 7.46 -34.44 -0.26 -12.62 16 19 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 20 C 0.08 1.97 5.43 -17.82 -0.10 1.88 16 21 N -0.87 -23.62 12.73 55.43 0.71 -22.91 16 22 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C -0.21 -4.36 9.88 -26.73 -0.26 -4.62 16 27 C -0.15 -3.31 9.26 -26.74 -0.25 -3.56 16 28 H 0.10 1.67 5.78 -51.93 -0.30 1.37 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.95 7.61 -51.92 -0.39 0.56 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.83 6.76 -51.93 -0.35 0.48 16 34 H 0.06 1.12 6.96 -51.93 -0.36 0.76 16 35 H 0.05 0.62 6.91 -51.93 -0.36 0.26 16 36 H 0.08 1.42 6.74 -51.93 -0.35 1.07 16 37 H 0.40 7.39 7.40 -40.82 -0.30 7.09 16 38 H 0.07 1.64 8.12 -51.93 -0.42 1.22 16 39 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16 40 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 41 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -27.68 342.56 -8.39 -36.07 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.43 Total: 10.42 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.16 Total: -13.08 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.39 Total: -36.58 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.32 Total: -16.87 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.68 -8.39 -36.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404138536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.329 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds