Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.98744 * 2 1 4 4 O 1.43747 * 109.87611 * 121.07871 * 2 1 3 5 5 C 1.44425 * 106.99809 * 145.91355 * 4 2 1 6 6 H 1.09002 * 110.59770 * 78.47005 * 5 4 2 7 7 C 1.52998 * 110.65356 * 201.48210 * 5 4 2 8 8 C 1.55000 * 103.47086 * 319.99118 * 5 4 2 9 9 H 1.09001 * 110.90473 * 155.19052 * 8 5 4 10 10 C 1.52997 * 110.90439 * 278.75643 * 8 5 4 11 11 C 1.54103 * 109.88156 * 238.91358 * 2 1 3 12 12 H 1.09001 * 110.48605 * 119.86920 * 11 2 1 13 13 C 1.50701 * 110.59916 * 357.27961 * 11 2 1 14 14 O 1.21288 * 119.99676 * 300.24007 * 13 11 2 15 15 N 1.34772 * 120.00130 * 120.24034 * 13 11 2 16 16 C 1.46499 * 119.99964 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47015 * 185.99245 * 16 15 13 18 18 C 1.50694 * 115.55075 * 38.65842 * 17 16 15 19 19 H 1.08005 * 120.00248 * 264.60214 * 18 17 16 20 20 C 1.37874 * 120.00043 * 84.60278 * 18 17 16 21 21 N 1.31517 * 119.99951 * 2.03485 * 20 18 17 22 22 Si 1.86801 * 120.00334 * 182.03032 * 20 18 17 23 23 H 1.48498 * 109.46809 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47097 * 119.99990 * 22 20 18 25 25 H 1.48491 * 109.47364 * 239.99954 * 22 20 18 26 26 C 1.53004 * 117.49775 * 252.95134 * 17 16 15 27 27 C 1.52996 * 59.99841 * 252.51157 * 26 17 16 28 28 H 1.09004 * 109.47010 * 181.08389 * 1 2 3 29 29 H 1.08999 * 109.47445 * 301.08812 * 1 2 3 30 30 H 1.09008 * 109.46989 * 61.08991 * 1 2 3 31 31 H 1.09001 * 109.47262 * 174.07033 * 7 5 4 32 32 H 1.08994 * 109.47008 * 294.06889 * 7 5 4 33 33 H 1.09001 * 109.47121 * 54.07009 * 7 5 4 34 34 H 1.09007 * 109.46708 * 177.09325 * 10 8 5 35 35 H 1.08991 * 109.47454 * 297.09124 * 10 8 5 36 36 H 1.08996 * 109.46861 * 57.09859 * 10 8 5 37 37 H 0.96998 * 119.99901 * 359.97438 * 15 13 11 38 38 H 1.08999 * 109.47535 * 305.99477 * 16 15 13 39 39 H 1.08999 * 109.47035 * 65.99407 * 16 15 13 40 40 H 0.96996 * 120.00114 * 185.01465 * 21 20 18 41 41 H 1.09001 * 117.50008 * 359.97438 * 26 17 16 42 42 H 1.09003 * 117.49727 * 145.02180 * 26 17 16 43 43 H 1.08994 * 117.49940 * 252.50548 * 27 26 17 44 44 H 1.09003 * 117.49817 * 107.49009 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9025 1.0244 0.0000 4 8 2.0187 -0.6978 1.1578 5 6 3.2379 -1.3650 0.7652 6 1 4.0687 -0.6599 0.7365 7 6 3.5470 -2.5259 1.7126 8 6 2.9195 -1.8915 -0.6575 9 1 3.8332 -2.0224 -1.2372 10 6 2.1260 -3.1979 -0.5912 11 6 2.0540 -0.7483 -1.2411 12 1 2.6619 -0.0859 -1.8574 13 6 0.9092 -1.3105 -2.0439 14 8 0.1459 -2.1052 -1.5371 15 7 0.7337 -0.9302 -3.3249 16 6 -0.3788 -1.4772 -4.1054 17 6 -0.2650 -1.0044 -5.5561 18 6 1.1336 -0.9515 -6.1146 19 1 1.6869 -0.0240 -6.0984 20 6 1.7070 -2.0869 -6.6464 21 7 1.0190 -3.2064 -6.7028 22 14 3.4610 -2.0354 -7.2870 23 1 4.0126 -0.6681 -7.1098 24 1 4.2927 -3.0061 -6.5312 25 1 3.4721 -2.3912 -8.7286 26 6 -1.2572 0.0583 -6.0327 27 6 -1.3944 -1.3873 -6.5145 28 1 -0.3633 -1.0275 0.0194 29 1 -0.3634 0.5306 0.8800 30 1 -0.3633 0.4968 -0.8997 31 1 4.4089 -3.0794 1.3400 32 1 3.7678 -2.1353 2.7059 33 1 2.6844 -3.1901 1.7669 34 1 1.8706 -3.5194 -1.6009 35 1 2.7296 -3.9655 -0.1072 36 1 1.2123 -3.0393 -0.0184 37 1 1.3440 -0.2944 -3.7300 38 1 -0.3437 -2.5662 -4.0744 39 1 -1.3228 -1.1319 -3.6838 40 1 1.4447 -4.0224 -7.0090 41 1 -1.9913 0.4204 -5.3128 42 1 -0.8983 0.7962 -6.7503 43 1 -1.1260 -1.6005 -7.5491 44 1 -2.2186 -1.9760 -6.1116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404138536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = -80.667134 kcal Electronic energy + Delta-G solvation = -23647.503054 eV Core-core repulsion = 20371.763766 eV Total energy + Delta-G solvation = -3275.739288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94359 -39.62044 -38.34790 -34.90209 -34.62398 -33.99311 -33.55627 -30.00821 -28.91733 -27.75839 -27.04147 -24.65657 -23.10260 -22.86946 -21.36826 -21.06924 -20.44070 -18.21091 -18.12272 -17.47630 -16.85515 -16.56610 -16.44945 -16.12940 -15.69007 -15.10932 -14.98810 -14.68769 -14.31449 -14.05491 -13.69474 -13.55325 -13.47741 -13.26627 -12.95047 -12.87297 -12.86627 -12.79188 -12.50225 -12.44807 -12.30707 -11.99454 -11.94099 -11.67157 -11.49186 -11.37449 -10.96795 -10.60297 -10.46945 -10.33627 -10.01969 -9.59601 -8.10411 -6.24323 1.40537 1.45252 1.53650 1.76468 2.40106 2.47734 2.81009 3.19650 3.43926 3.51043 3.67043 3.86979 3.95404 4.14185 4.26768 4.29904 4.39722 4.41808 4.52363 4.55245 4.58058 4.64074 4.68594 4.73964 4.76802 4.91409 4.95876 4.97943 5.00981 5.05912 5.07658 5.17478 5.27273 5.33755 5.35763 5.51092 5.53643 5.64297 5.76160 5.81479 6.03470 6.37418 6.83596 6.91308 7.46338 7.50706 8.97669 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.005565 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.101658 B = 5030.022786 C = 5872.587413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 H 0.100 0.900 4 O -0.384 6.384 5 C 0.079 3.921 6 H 0.095 0.905 7 C -0.146 4.146 8 C -0.107 4.107 9 H 0.103 0.897 10 C -0.128 4.128 11 C -0.140 4.140 12 H 0.122 0.878 13 C 0.515 3.485 14 O -0.574 6.574 15 N -0.695 5.695 16 C 0.181 3.819 17 C 0.002 3.998 18 C -0.498 4.498 19 H 0.067 0.933 20 C 0.029 3.971 21 N -0.907 5.907 22 Si 0.944 3.056 23 H -0.256 1.256 24 H -0.287 1.287 25 H -0.290 1.290 26 C -0.181 4.181 27 C -0.159 4.159 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.023 0.977 39 H 0.041 0.959 40 H 0.257 0.743 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 6.512 12.411 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.118 0.882 4 O -0.304 6.304 5 C 0.022 3.978 6 H 0.113 0.887 7 C -0.203 4.203 8 C -0.126 4.126 9 H 0.122 0.878 10 C -0.185 4.185 11 C -0.162 4.162 12 H 0.140 0.860 13 C 0.302 3.698 14 O -0.455 6.455 15 N -0.344 5.344 16 C 0.056 3.944 17 C 0.002 3.998 18 C -0.536 4.536 19 H 0.085 0.915 20 C -0.172 4.172 21 N -0.545 5.545 22 Si 0.771 3.229 23 H -0.179 1.179 24 H -0.213 1.213 25 H -0.216 1.216 26 C -0.218 4.218 27 C -0.197 4.197 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.246 0.754 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.293 5.788 12.825 15.034 hybrid contribution 0.757 -0.382 -1.335 1.581 sum 6.050 5.407 11.490 14.066 Atomic orbital electron populations 1.22210 0.94493 1.03480 1.01856 1.22553 0.94961 0.95608 0.82783 0.88247 1.88869 1.40748 1.67862 1.32952 1.23322 0.87653 0.94596 0.92225 0.88731 1.21844 1.02368 0.96782 0.99291 1.22677 0.98388 0.94156 0.97352 0.87836 1.21778 0.99991 0.96238 1.00496 1.22878 0.95873 0.99491 0.97943 0.86025 1.20529 0.86152 0.81229 0.81882 1.90598 1.47971 1.36116 1.70812 1.45977 1.31232 1.45951 1.11258 1.20464 0.87312 0.95861 0.90749 1.19170 0.91454 0.98889 0.90333 1.20614 0.98309 0.95885 1.38784 0.91504 1.25667 1.00760 0.95584 0.95188 1.70137 1.36829 1.00117 1.47385 0.85715 0.80994 0.78668 0.77563 1.17939 1.21292 1.21632 1.23084 1.03211 0.91665 1.03792 1.22368 1.00918 0.97019 0.99429 0.91787 0.91392 0.91998 0.89375 0.91096 0.92740 0.95783 0.91505 0.92419 0.75448 0.95834 0.94114 0.93420 0.89294 0.89776 0.91993 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 8.33 71.98 0.60 -4.08 16 2 C 0.10 2.52 4.05 30.97 0.13 2.64 16 3 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 4 O -0.38 -10.34 10.88 -148.98 -1.62 -11.96 16 5 C 0.08 1.70 3.80 31.28 0.12 1.82 16 6 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.15 -2.72 8.66 71.98 0.62 -2.10 16 8 C -0.11 -2.74 3.46 -9.49 -0.03 -2.77 16 9 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 10 C -0.13 -4.02 6.55 71.98 0.47 -3.55 16 11 C -0.14 -3.81 3.41 -10.55 -0.04 -3.85 16 12 H 0.12 2.66 7.97 -2.39 -0.02 2.64 16 13 C 0.51 18.58 4.51 87.66 0.40 18.98 16 14 O -0.57 -24.35 10.82 -3.05 -0.03 -24.38 16 15 N -0.69 -26.55 5.28 -463.06 -2.44 -28.99 16 16 C 0.18 8.03 5.77 86.38 0.50 8.53 16 17 C 0.00 0.10 1.77 -52.93 -0.09 0.01 16 18 C -0.50 -24.28 7.46 25.60 0.19 -24.09 16 19 H 0.07 3.11 7.81 -2.91 -0.02 3.09 16 20 C 0.03 1.48 5.43 84.65 0.46 1.94 16 21 N -0.91 -50.47 12.73 21.45 0.27 -50.19 16 22 Si 0.94 40.59 29.54 68.60 2.03 42.61 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 26 C -0.18 -7.13 9.88 30.59 0.30 -6.83 16 27 C -0.16 -7.26 9.26 30.59 0.28 -6.98 16 28 H 0.06 2.27 5.78 -2.38 -0.01 2.25 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.76 7.61 -2.38 -0.02 1.75 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.19 6.76 -2.39 -0.02 1.18 16 34 H 0.02 0.90 6.96 -2.38 -0.02 0.88 16 35 H 0.07 1.75 6.91 -2.39 -0.02 1.74 16 36 H 0.06 2.07 6.74 -2.39 -0.02 2.06 16 37 H 0.41 14.46 7.40 -92.71 -0.69 13.77 16 38 H 0.02 1.23 8.12 -2.39 -0.02 1.21 16 39 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 40 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 41 H 0.09 3.10 8.08 -2.39 -0.02 3.08 16 42 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -61.22 342.56 2.40 -58.81 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.29 Total: 34.42 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.91 Total: -20.32 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.17 Total: -79.19 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.65 Total: -36.34 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.22 2.40 -58.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404138536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.852 kcal (2) G-P(sol) polarization free energy of solvation -61.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds