Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.42118 * 2 1 4 4 O 1.44427 * 110.37272 * 122.30985 * 2 1 3 5 5 C 1.44430 * 105.27274 * 159.34318 * 4 2 1 6 6 H 1.09001 * 110.37064 * 78.42934 * 5 4 2 7 7 C 1.53000 * 110.37012 * 200.65669 * 5 4 2 8 8 C 1.54796 * 104.80106 * 319.41294 * 5 4 2 9 9 H 1.09001 * 110.60825 * 265.47028 * 8 5 4 10 10 C 1.53001 * 110.55194 * 142.66906 * 8 5 4 11 11 C 1.54481 * 110.37198 * 237.69077 * 2 1 3 12 12 H 1.08994 * 110.51060 * 335.97222 * 11 2 1 13 13 C 1.50705 * 110.51177 * 98.54662 * 11 2 1 14 14 O 1.21279 * 119.99818 * 34.69925 * 13 11 2 15 15 N 1.34779 * 119.99767 * 214.70573 * 13 11 2 16 16 C 1.46499 * 119.99681 * 185.03140 * 15 13 11 17 17 C 1.52996 * 109.47095 * 175.01326 * 16 15 13 18 18 C 1.50700 * 115.55183 * 65.05408 * 17 16 15 19 19 H 1.07993 * 120.00108 * 268.84186 * 18 17 16 20 20 C 1.37881 * 119.99959 * 89.12103 * 18 17 16 21 21 N 1.31508 * 120.00139 * 184.35076 * 20 18 17 22 22 Si 1.86804 * 119.99859 * 4.34810 * 20 18 17 23 23 H 1.48500 * 109.47025 * 94.75595 * 22 20 18 24 24 H 1.48506 * 109.46940 * 214.75665 * 22 20 18 25 25 H 1.48499 * 109.47290 * 334.75216 * 22 20 18 26 26 C 1.53004 * 117.51920 * 210.75905 * 17 16 15 27 27 C 1.52999 * 117.49803 * 279.38719 * 17 16 15 28 28 H 1.08996 * 109.47289 * 187.29402 * 1 2 3 29 29 H 1.09002 * 109.47116 * 307.29376 * 1 2 3 30 30 H 1.09001 * 109.47133 * 67.29744 * 1 2 3 31 31 H 1.09005 * 109.46937 * 58.54353 * 7 5 4 32 32 H 1.08996 * 109.46949 * 178.54408 * 7 5 4 33 33 H 1.08997 * 109.47169 * 298.55160 * 7 5 4 34 34 H 1.09002 * 109.47246 * 310.44193 * 10 8 5 35 35 H 1.09001 * 109.47865 * 70.44765 * 10 8 5 36 36 H 1.09000 * 109.47257 * 190.45037 * 10 8 5 37 37 H 0.96998 * 119.99789 * 5.02908 * 15 13 11 38 38 H 1.08997 * 109.47618 * 55.00550 * 16 15 13 39 39 H 1.09003 * 109.47152 * 295.00979 * 16 15 13 40 40 H 0.97003 * 120.00528 * 179.97438 * 21 20 18 41 41 H 1.08997 * 117.49724 * 214.97157 * 26 17 16 42 42 H 1.09002 * 117.49352 * 359.97438 * 26 17 16 43 43 H 1.09005 * 117.49780 * 359.97107 * 27 17 16 44 44 H 1.09000 * 117.49992 * 144.97717 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 1.1443 5 6 3.3874 -1.0871 0.7994 6 1 4.0528 -0.2328 0.9239 7 6 3.8602 -2.2594 1.6615 8 6 3.3172 -1.5083 -0.6885 9 1 3.1928 -2.5877 -0.7762 10 6 4.5705 -1.0493 -1.4363 11 6 2.0678 -0.7740 -1.2240 12 1 1.3266 -1.4902 -1.5787 13 6 2.4482 0.1801 -2.3267 14 8 2.9162 1.2654 -2.0548 15 7 2.2683 -0.1727 -3.6150 16 6 2.7387 0.7070 -4.6879 17 6 2.5254 0.0221 -6.0393 18 6 1.0891 -0.2204 -6.4255 19 1 0.6085 -1.1507 -6.1612 20 6 0.3902 0.7431 -7.1214 21 7 -0.8865 0.5685 -7.3839 22 14 1.2569 2.2967 -7.6913 23 1 1.7203 2.1199 -9.0910 24 1 0.3148 3.4426 -7.6228 25 1 2.4245 2.5627 -6.8132 26 6 3.5131 0.3489 -7.1611 27 6 3.5594 -1.0179 -6.4752 28 1 -0.3633 -1.0193 0.1305 29 1 -0.3633 0.6227 0.8176 30 1 -0.3633 0.3966 -0.9480 31 1 3.1937 -3.1096 1.5157 32 1 4.8733 -2.5380 1.3718 33 1 3.8501 -1.9658 2.7112 34 1 4.7532 0.0047 -1.2266 35 1 5.4264 -1.6388 -1.1075 36 1 4.4250 -1.1865 -2.5078 37 1 1.8273 -1.0090 -3.8317 38 1 3.7997 0.9142 -4.5489 39 1 2.1795 1.6423 -4.6623 40 1 -1.3783 1.2465 -7.8732 41 1 3.1240 0.3886 -8.1785 42 1 4.3149 1.0524 -6.9366 43 1 4.3919 -1.2139 -5.7994 44 1 3.2007 -1.8777 -7.0411 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404138541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = -72.539468 kcal Electronic energy + Delta-G solvation = -23318.386825 eV Core-core repulsion = 20042.999979 eV Total energy + Delta-G solvation = -3275.386846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65384 -38.47601 -37.03248 -33.83584 -33.43109 -32.67169 -32.17453 -29.43751 -27.75471 -26.42906 -25.20885 -23.29888 -21.91298 -21.61326 -21.09676 -19.61030 -18.92909 -16.98159 -16.44421 -16.02217 -15.79653 -15.57084 -15.11496 -14.71218 -14.33153 -13.98953 -13.58548 -13.33008 -13.06969 -12.84579 -12.73178 -12.53377 -12.43821 -12.30357 -11.98543 -11.94870 -11.69634 -11.54905 -11.20629 -11.08064 -10.96276 -10.65620 -10.54817 -10.48459 -10.24797 -9.77096 -9.65532 -9.36643 -9.22662 -8.73661 -8.56835 -8.35572 -6.20768 -4.25718 2.96520 3.24186 3.35974 3.40688 3.55183 3.84480 4.35774 4.43851 4.53728 4.76181 4.80938 4.99880 5.08500 5.13609 5.21908 5.32983 5.33590 5.39763 5.43072 5.50062 5.60344 5.64907 5.78486 5.82397 5.88432 5.92942 5.96336 6.01309 6.06915 6.10182 6.17771 6.20627 6.27008 6.36501 6.45850 6.64242 6.85769 6.92737 7.01736 7.07018 7.62705 8.09818 8.35577 8.68150 8.79048 9.42418 10.90345 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.004767 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.417676 B = 5871.777933 C = 6418.226202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 H 0.087 0.913 4 O -0.369 6.369 5 C 0.075 3.925 6 H 0.072 0.928 7 C -0.145 4.145 8 C -0.102 4.102 9 H 0.090 0.910 10 C -0.155 4.155 11 C -0.141 4.141 12 H 0.101 0.899 13 C 0.522 3.478 14 O -0.555 6.555 15 N -0.700 5.700 16 C 0.158 3.842 17 C -0.015 4.015 18 C -0.493 4.493 19 H 0.078 0.922 20 C 0.081 3.919 21 N -0.893 5.893 22 Si 0.878 3.122 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.255 1.255 26 C -0.191 4.191 27 C -0.179 4.179 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.405 0.595 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 -4.955 13.146 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.105 0.895 4 O -0.289 6.289 5 C 0.018 3.982 6 H 0.089 0.911 7 C -0.202 4.202 8 C -0.121 4.121 9 H 0.108 0.892 10 C -0.212 4.212 11 C -0.162 4.162 12 H 0.119 0.881 13 C 0.307 3.693 14 O -0.434 6.434 15 N -0.349 5.349 16 C 0.035 3.965 17 C -0.016 4.016 18 C -0.530 4.530 19 H 0.096 0.904 20 C -0.123 4.123 21 N -0.530 5.530 22 Si 0.706 3.294 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.179 1.179 26 C -0.229 4.229 27 C -0.217 4.217 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.240 0.760 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.285 -4.152 13.417 16.307 hybrid contribution 0.170 0.496 -0.929 1.067 sum 8.455 -3.657 12.488 15.518 Atomic orbital electron populations 1.21838 0.92819 1.02929 1.02913 1.22907 0.95246 0.96108 0.82841 0.89534 1.89107 1.26924 1.74678 1.38147 1.23118 0.84980 0.97276 0.92843 0.91050 1.21804 1.01167 0.97308 0.99934 1.22508 0.94178 1.00416 0.95024 0.89156 1.21990 0.96201 1.02409 1.00611 1.22816 0.99315 0.98205 0.95906 0.88098 1.20028 0.78418 0.87145 0.83676 1.90643 1.46316 1.23022 1.83467 1.45939 1.59194 1.24865 1.04860 1.21084 0.96667 0.93026 0.85759 1.19631 0.92958 0.98363 0.90638 1.20169 0.92010 1.04129 1.36699 0.90383 1.24978 0.94450 0.97910 0.94925 1.69886 1.07825 1.35358 1.39894 0.86863 0.80048 0.82869 0.79613 1.20613 1.22119 1.17862 1.22921 1.02628 0.98724 0.98618 1.22865 1.01696 0.93058 1.04057 0.91642 0.91768 0.90709 0.91791 0.91204 0.91908 0.91211 0.92312 0.91703 0.75999 0.93677 0.92034 0.92442 0.89317 0.90692 0.90987 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.52 37.16 0.35 -1.49 16 2 C 0.09 1.22 3.43 -25.95 -0.09 1.13 16 3 H 0.09 1.36 6.99 -51.93 -0.36 1.00 16 4 O -0.37 -5.08 11.04 -35.23 -0.39 -5.47 16 5 C 0.08 0.88 3.48 -25.78 -0.09 0.79 16 6 H 0.07 0.86 7.76 -51.93 -0.40 0.46 16 7 C -0.14 -1.31 9.53 37.16 0.35 -0.96 16 8 C -0.10 -1.21 3.27 -88.88 -0.29 -1.50 16 9 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 10 C -0.15 -1.89 8.05 37.16 0.30 -1.59 16 11 C -0.14 -1.93 3.05 -90.20 -0.28 -2.20 16 12 H 0.10 1.26 7.83 -51.93 -0.41 0.85 16 13 C 0.52 8.88 4.75 -10.98 -0.05 8.83 16 14 O -0.56 -11.12 14.86 5.56 0.08 -11.04 16 15 N -0.70 -12.46 5.34 -60.30 -0.32 -12.78 16 16 C 0.16 3.22 5.26 -4.04 -0.02 3.20 16 17 C -0.01 -0.31 0.85 -155.66 -0.13 -0.45 16 18 C -0.49 -12.63 9.20 -34.44 -0.32 -12.95 16 19 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 22 Si 0.88 21.04 24.88 -169.99 -4.23 16.81 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.25 -5.81 5.92 56.52 0.33 -5.48 16 26 C -0.19 -3.84 7.09 -26.73 -0.19 -4.03 16 27 C -0.18 -3.34 9.95 -26.73 -0.27 -3.60 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.98 6.90 -51.93 -0.36 0.63 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.87 7.19 -51.93 -0.37 0.49 16 37 H 0.41 6.81 8.29 -40.82 -0.34 6.47 16 38 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.06 1.40 7.68 -51.93 -0.40 1.00 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.09 1.87 6.69 -51.93 -0.35 1.52 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -29.55 346.18 -7.35 -36.90 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.67 Total: 8.32 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.81 Total: -12.72 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.45 Total: -38.02 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.31 Total: -16.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.23 Total: 16.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.55 -7.35 -36.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404138541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.637 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds