Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46891 * 2 1 4 4 C 1.52997 * 109.47501 * 239.99591 * 2 1 3 5 5 C 1.52995 * 109.47314 * 175.02092 * 4 2 1 6 6 C 1.54890 * 110.48422 * 288.28715 * 5 4 2 7 7 C 1.54895 * 102.74352 * 203.37859 * 6 5 4 8 8 C 1.54264 * 104.19835 * 37.94371 * 7 6 5 9 9 C 1.53875 * 106.59594 * 336.38713 * 8 7 6 10 10 C 1.50706 * 109.46694 * 119.99118 * 2 1 3 11 11 O 1.21278 * 119.99434 * 85.10898 * 10 2 1 12 12 N 1.34773 * 120.00397 * 265.10282 * 10 2 1 13 13 C 1.47075 * 136.05465 * 3.11851 * 12 10 2 14 14 C 1.53753 * 87.88498 * 152.95759 * 13 12 10 15 15 O 1.42897 * 114.39565 * 272.67329 * 14 13 12 16 16 C 1.50709 * 114.26289 * 139.79192 * 14 13 12 17 17 H 1.08001 * 119.99632 * 266.47208 * 16 14 13 18 18 C 1.37869 * 120.00140 * 86.47790 * 16 14 13 19 19 N 1.31519 * 119.99808 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00159 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46991 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46977 * 119.99727 * 20 18 16 23 23 H 1.48500 * 109.46694 * 239.99821 * 20 18 16 24 24 C 1.47067 * 136.06056 * 183.48341 * 12 10 2 25 25 H 1.08998 * 109.46802 * 174.39420 * 1 2 3 26 26 H 1.08996 * 109.47406 * 294.39962 * 1 2 3 27 27 H 1.09006 * 109.46665 * 54.39867 * 1 2 3 28 28 H 1.09002 * 109.47128 * 55.01817 * 4 2 1 29 29 H 1.09000 * 109.46750 * 295.02252 * 4 2 1 30 30 H 1.09006 * 110.54215 * 50.89422 * 5 4 2 31 31 H 1.08993 * 110.75906 * 85.06744 * 6 5 4 32 32 H 1.08993 * 110.75916 * 321.69023 * 6 5 4 33 33 H 1.09003 * 110.48614 * 279.25968 * 7 6 5 34 34 H 1.09005 * 110.48228 * 156.62405 * 7 6 5 35 35 H 1.08996 * 110.03477 * 95.67360 * 8 7 6 36 36 H 1.09008 * 110.02919 * 217.05677 * 8 7 6 37 37 H 1.08997 * 110.03329 * 119.28756 * 9 8 7 38 38 H 1.09010 * 110.03146 * 240.66898 * 9 8 7 39 39 H 1.08996 * 113.46504 * 267.69152 * 13 12 10 40 40 H 1.08999 * 113.46672 * 38.12815 * 13 12 10 41 41 H 0.96699 * 114.00262 * 273.58347 * 15 14 13 42 42 H 0.97001 * 119.99706 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.46179 * 321.86679 * 24 12 10 44 44 H 1.08995 * 113.46594 * 92.25104 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6138 -1.3133 6 6 3.9919 0.8319 -1.6693 7 6 5.4040 0.6321 -2.2737 8 6 5.2874 -0.6759 -3.0833 9 6 4.1182 -1.4680 -2.4725 10 6 2.0323 -0.7103 1.2306 11 8 2.1499 -1.9173 1.2285 12 7 2.3508 -0.0041 2.3335 13 6 2.2958 1.4086 2.7389 14 6 2.1713 0.9271 4.1938 15 8 0.8313 0.6677 4.6170 16 6 2.9621 1.7412 5.1854 17 1 3.9611 1.4360 5.4599 18 6 2.4102 2.8753 5.7422 19 7 1.1938 3.2470 5.4076 20 14 3.3901 3.8840 6.9718 21 1 4.7207 3.2575 7.1772 22 1 3.5670 5.2634 6.4511 23 1 2.6613 3.9324 8.2647 24 6 2.9123 -0.3061 3.6588 25 1 -0.3633 -1.0227 -0.1004 26 1 -0.3634 0.4245 0.9358 27 1 -0.3633 0.5983 -0.8356 28 1 1.6058 -0.2617 -2.1370 29 1 1.7514 -1.7715 -1.2056 30 1 4.0102 -0.9208 -0.3668 31 1 4.0390 1.4523 -0.7744 32 1 3.3144 1.2646 -2.4053 33 1 6.1461 0.5263 -1.4825 34 1 5.6597 1.4649 -2.9290 35 1 5.0797 -0.4504 -4.1292 36 1 6.2110 -1.2491 -3.0014 37 1 3.3430 -1.6270 -3.2221 38 1 4.4737 -2.4266 -2.0943 39 1 3.2185 1.9535 2.5395 40 1 1.4105 1.9303 2.3755 41 1 0.3674 1.4465 4.9536 42 1 0.8057 4.0451 5.7991 43 1 2.5521 -1.2451 4.0790 44 1 3.9976 -0.2140 3.7016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408384095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = -80.447118 kcal Electronic energy + Delta-G solvation = -23137.270809 eV Core-core repulsion = 19861.541061 eV Total energy + Delta-G solvation = -3275.729747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84527 -38.49246 -37.26539 -34.02351 -33.98574 -32.19282 -29.92071 -28.67318 -28.54356 -25.57456 -25.06932 -25.00205 -22.31632 -20.60320 -19.85211 -19.60844 -17.97800 -17.42125 -16.45794 -15.85268 -15.40020 -15.14290 -14.88609 -14.50159 -14.18271 -13.91166 -13.37999 -13.16271 -12.87779 -12.86649 -12.63146 -12.19432 -11.99056 -11.77462 -11.59746 -11.56267 -11.29914 -11.17400 -11.08749 -11.01643 -10.95408 -10.57823 -10.48243 -10.39704 -10.32161 -10.25499 -10.23590 -9.53075 -9.08243 -8.76838 -8.36428 -7.79419 -6.41038 -4.51220 3.12492 3.22119 3.25563 3.28716 3.63295 4.17504 4.54700 4.64341 4.70762 4.81611 4.96505 5.11296 5.28036 5.40949 5.44642 5.55479 5.59107 5.61933 5.65614 5.73044 5.75588 5.81445 5.89537 5.95740 5.99878 6.02764 6.04595 6.12994 6.19691 6.22182 6.31965 6.36134 6.43148 6.46803 6.52382 6.55759 6.69219 6.71155 7.11934 7.62413 7.80817 8.51943 8.59532 8.85685 9.20396 9.49288 10.65568 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021243 B = 0.004432 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.749738 B = 6315.770868 C = 6934.002551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.093 4.093 5 C -0.093 4.093 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.124 4.124 9 C -0.118 4.118 10 C 0.542 3.458 11 O -0.565 6.565 12 N -0.634 5.634 13 C 0.073 3.927 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.532 4.532 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.280 1.280 24 C 0.105 3.895 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.064 0.936 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 -1.266 -13.336 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 H 0.103 0.897 4 C -0.131 4.131 5 C -0.112 4.112 6 C -0.159 4.159 7 C -0.163 4.163 8 C -0.161 4.161 9 C -0.156 4.156 10 C 0.332 3.668 11 O -0.445 6.445 12 N -0.367 5.367 13 C -0.051 4.051 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.571 4.571 17 H 0.091 0.909 18 C -0.130 4.130 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.018 4.018 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.250 0.750 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.314 -2.478 -13.674 14.287 hybrid contribution 0.352 1.300 0.761 1.547 sum 3.666 -1.178 -12.913 13.475 Atomic orbital electron populations 1.21680 0.93009 1.02450 1.02507 1.21235 0.97445 1.00525 0.93297 0.89681 1.21524 0.94606 1.01325 0.95616 1.22028 0.95366 0.94937 0.98847 1.22608 0.96179 0.96712 1.00430 1.22349 0.97581 0.97128 0.99210 1.22127 0.98437 0.96414 0.99166 1.22161 0.97381 0.98613 0.97431 1.20014 0.77385 0.86886 0.82550 1.90610 1.56377 1.14297 1.83248 1.49773 1.61352 1.11887 1.13709 1.24217 1.00591 0.81710 0.98555 1.19581 0.82291 0.89486 0.88837 1.86047 1.26296 1.41331 1.84708 1.21488 1.01677 1.08666 1.25232 0.90928 1.25073 0.95104 0.96857 0.96004 1.69276 1.14726 1.26072 1.43840 0.86273 0.80126 0.79546 0.80557 1.19413 1.20658 1.20611 1.23298 0.97947 1.00587 0.79950 0.92136 0.91822 0.91948 0.91448 0.90755 0.90672 0.91556 0.91497 0.91758 0.91973 0.92181 0.92226 0.91902 0.92009 0.90305 0.91865 0.75030 0.91654 0.91725 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.18 37.16 0.34 -1.67 16 2 C -0.10 -1.63 2.57 -91.77 -0.24 -1.87 16 3 H 0.08 1.28 7.12 -51.93 -0.37 0.91 16 4 C -0.09 -1.27 3.79 -26.74 -0.10 -1.37 16 5 C -0.09 -1.25 2.75 -88.97 -0.24 -1.49 16 6 C -0.12 -1.44 5.70 -24.73 -0.14 -1.58 16 7 C -0.13 -1.33 6.83 -25.07 -0.17 -1.50 16 8 C -0.12 -1.25 6.80 -25.61 -0.17 -1.43 16 9 C -0.12 -1.36 6.37 -25.62 -0.16 -1.52 16 10 C 0.54 10.98 6.00 -10.98 -0.07 10.92 16 11 O -0.57 -13.05 16.85 5.56 0.09 -12.95 16 12 N -0.63 -13.48 3.69 -185.02 -0.68 -14.16 16 13 C 0.07 1.55 7.63 -8.36 -0.06 1.48 16 14 C 0.24 5.76 1.58 -91.12 -0.14 5.61 16 15 O -0.57 -14.79 13.55 -35.23 -0.48 -15.27 16 16 C -0.53 -13.26 8.70 -34.44 -0.30 -13.56 16 17 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.07 1.77 5.39 -17.82 -0.10 1.68 16 19 N -0.90 -22.55 11.01 55.43 0.61 -21.94 16 20 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 C 0.10 2.32 8.02 -8.50 -0.07 2.25 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.77 7.98 -51.93 -0.41 0.35 16 29 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 30 H 0.07 1.23 7.12 -51.93 -0.37 0.86 16 31 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 32 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 38 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 39 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.39 10.25 6.32 45.56 0.29 10.54 16 42 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 43 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -27.63 350.99 -8.93 -36.56 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -7.11 Total: 12.31 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.63 Total: -4.04 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.07 Total: -36.11 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.38 Total: -28.22 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.63 -8.93 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408384095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.888 kcal (2) G-P(sol) polarization free energy of solvation -27.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds