Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46891 * 2 1 4 4 C 1.52997 * 109.47501 * 239.99591 * 2 1 3 5 5 C 1.52995 * 109.47314 * 175.02092 * 4 2 1 6 6 C 1.54890 * 110.48422 * 288.28715 * 5 4 2 7 7 C 1.54895 * 102.74352 * 203.37859 * 6 5 4 8 8 C 1.54264 * 104.19835 * 37.94371 * 7 6 5 9 9 C 1.53875 * 106.59594 * 336.38713 * 8 7 6 10 10 C 1.50706 * 109.46694 * 119.99118 * 2 1 3 11 11 O 1.21278 * 119.99434 * 85.10898 * 10 2 1 12 12 N 1.34773 * 120.00397 * 265.10282 * 10 2 1 13 13 C 1.47075 * 136.05465 * 3.11851 * 12 10 2 14 14 C 1.53753 * 87.88498 * 152.95759 * 13 12 10 15 15 O 1.42897 * 114.39565 * 272.67329 * 14 13 12 16 16 C 1.50709 * 114.26289 * 139.79192 * 14 13 12 17 17 H 1.08001 * 119.99632 * 266.47208 * 16 14 13 18 18 C 1.37869 * 120.00140 * 86.47790 * 16 14 13 19 19 N 1.31519 * 119.99808 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00159 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46991 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46977 * 119.99727 * 20 18 16 23 23 H 1.48500 * 109.46694 * 239.99821 * 20 18 16 24 24 C 1.47067 * 136.06056 * 183.48341 * 12 10 2 25 25 H 1.08998 * 109.46802 * 174.39420 * 1 2 3 26 26 H 1.08996 * 109.47406 * 294.39962 * 1 2 3 27 27 H 1.09006 * 109.46665 * 54.39867 * 1 2 3 28 28 H 1.09002 * 109.47128 * 55.01817 * 4 2 1 29 29 H 1.09000 * 109.46750 * 295.02252 * 4 2 1 30 30 H 1.09006 * 110.54215 * 50.89422 * 5 4 2 31 31 H 1.08993 * 110.75906 * 85.06744 * 6 5 4 32 32 H 1.08993 * 110.75916 * 321.69023 * 6 5 4 33 33 H 1.09003 * 110.48614 * 279.25968 * 7 6 5 34 34 H 1.09005 * 110.48228 * 156.62405 * 7 6 5 35 35 H 1.08996 * 110.03477 * 95.67360 * 8 7 6 36 36 H 1.09008 * 110.02919 * 217.05677 * 8 7 6 37 37 H 1.08997 * 110.03329 * 119.28756 * 9 8 7 38 38 H 1.09010 * 110.03146 * 240.66898 * 9 8 7 39 39 H 1.08996 * 113.46504 * 267.69152 * 13 12 10 40 40 H 1.08999 * 113.46672 * 38.12815 * 13 12 10 41 41 H 0.96699 * 114.00262 * 273.58347 * 15 14 13 42 42 H 0.97001 * 119.99706 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.46179 * 321.86679 * 24 12 10 44 44 H 1.08995 * 113.46594 * 92.25104 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6138 -1.3133 6 6 3.9919 0.8319 -1.6693 7 6 5.4040 0.6321 -2.2737 8 6 5.2874 -0.6759 -3.0833 9 6 4.1182 -1.4680 -2.4725 10 6 2.0323 -0.7103 1.2306 11 8 2.1499 -1.9173 1.2285 12 7 2.3508 -0.0041 2.3335 13 6 2.2958 1.4086 2.7389 14 6 2.1713 0.9271 4.1938 15 8 0.8313 0.6677 4.6170 16 6 2.9621 1.7412 5.1854 17 1 3.9611 1.4360 5.4599 18 6 2.4102 2.8753 5.7422 19 7 1.1938 3.2470 5.4076 20 14 3.3901 3.8840 6.9718 21 1 4.7207 3.2575 7.1772 22 1 3.5670 5.2634 6.4511 23 1 2.6613 3.9324 8.2647 24 6 2.9123 -0.3061 3.6588 25 1 -0.3633 -1.0227 -0.1004 26 1 -0.3634 0.4245 0.9358 27 1 -0.3633 0.5983 -0.8356 28 1 1.6058 -0.2617 -2.1370 29 1 1.7514 -1.7715 -1.2056 30 1 4.0102 -0.9208 -0.3668 31 1 4.0390 1.4523 -0.7744 32 1 3.3144 1.2646 -2.4053 33 1 6.1461 0.5263 -1.4825 34 1 5.6597 1.4649 -2.9290 35 1 5.0797 -0.4504 -4.1292 36 1 6.2110 -1.2491 -3.0014 37 1 3.3430 -1.6270 -3.2221 38 1 4.4737 -2.4266 -2.0943 39 1 3.2185 1.9535 2.5395 40 1 1.4105 1.9303 2.3755 41 1 0.3674 1.4465 4.9536 42 1 0.8057 4.0451 5.7991 43 1 2.5521 -1.2451 4.0790 44 1 3.9976 -0.2140 3.7016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408384095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = -96.753063 kcal Electronic energy + Delta-G solvation = -23137.977888 eV Core-core repulsion = 19861.541061 eV Total energy + Delta-G solvation = -3276.436826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46929 -39.82693 -38.69166 -35.89372 -35.29131 -34.13247 -31.07169 -30.19767 -29.55102 -27.36700 -26.83946 -26.08172 -23.73513 -21.74152 -21.21436 -20.70652 -19.69937 -19.17975 -18.08513 -17.24821 -16.84802 -16.60254 -16.34209 -15.94273 -15.85864 -15.20556 -14.74692 -14.48778 -14.35947 -14.22776 -13.95479 -13.81006 -13.42439 -13.25954 -13.15509 -12.84951 -12.78800 -12.66349 -12.37157 -12.24220 -12.14848 -12.06002 -11.90168 -11.50216 -11.40906 -11.37400 -11.30926 -11.21626 -10.85098 -10.61335 -10.21391 -9.56915 -8.28167 -6.45360 1.45413 1.50164 1.60453 1.67165 2.00357 2.40530 2.93853 3.44640 3.54985 3.72713 3.74776 3.84100 4.03751 4.11725 4.17254 4.32881 4.46194 4.48598 4.57011 4.59381 4.63019 4.67090 4.73434 4.77012 4.80520 4.82446 4.89541 4.91284 4.94400 5.00850 5.06601 5.11393 5.20099 5.22136 5.26328 5.29785 5.38271 5.51916 5.53231 5.72234 5.90265 6.60613 6.91781 7.18990 7.29244 7.48225 8.78280 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021243 B = 0.004432 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.749738 B = 6315.770868 C = 6934.002551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 H 0.095 0.905 4 C -0.087 4.087 5 C -0.096 4.096 6 C -0.119 4.119 7 C -0.125 4.125 8 C -0.120 4.120 9 C -0.117 4.117 10 C 0.535 3.465 11 O -0.599 6.599 12 N -0.638 5.638 13 C 0.090 3.910 14 C 0.220 3.780 15 O -0.586 6.586 16 C -0.553 4.553 17 H 0.073 0.927 18 C 0.034 3.966 19 N -0.917 5.917 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.282 1.282 24 C 0.103 3.897 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.389 0.611 42 H 0.277 0.723 43 H 0.048 0.952 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 0.124 -15.175 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.114 0.886 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.156 4.156 7 C -0.163 4.163 8 C -0.158 4.158 9 C -0.155 4.155 10 C 0.327 3.673 11 O -0.481 6.481 12 N -0.371 5.371 13 C -0.033 4.033 14 C 0.178 3.822 15 O -0.399 6.399 16 C -0.591 4.591 17 H 0.091 0.909 18 C -0.167 4.167 19 N -0.558 5.558 20 Si 0.796 3.204 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.208 1.208 24 C -0.020 4.020 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.777 -1.089 -15.525 16.015 hybrid contribution 0.186 0.805 1.365 1.596 sum 3.964 -0.284 -14.160 14.707 Atomic orbital electron populations 1.21693 0.91815 1.02789 1.02983 1.21332 0.98259 1.00613 0.91669 0.88634 1.21533 0.94878 1.00341 0.95667 1.21986 0.95067 0.96610 0.97813 1.22602 0.97344 0.95240 1.00455 1.22362 0.96555 0.98117 0.99250 1.22122 0.97897 0.95820 0.99941 1.22160 0.98383 0.97915 0.97043 1.20974 0.76318 0.86717 0.83324 1.90583 1.57658 1.15949 1.83919 1.49870 1.61561 1.11881 1.13774 1.23985 1.01101 0.81645 0.96601 1.19851 0.81491 0.90624 0.90189 1.86032 1.27431 1.41447 1.85005 1.21685 1.01926 1.09278 1.26168 0.90891 1.25756 0.95952 0.97633 0.97337 1.69331 1.15626 1.26419 1.44411 0.85309 0.78753 0.78190 0.78192 1.19174 1.20017 1.20765 1.23306 0.98779 0.99187 0.80763 0.92574 0.93919 0.88167 0.87990 0.92401 0.94575 0.92869 0.89554 0.92892 0.90193 0.90286 0.91983 0.90382 0.93247 0.89011 0.91916 0.75480 0.91302 0.93369 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.18 71.98 0.66 -3.05 16 2 C -0.10 -2.96 2.57 -11.54 -0.03 -2.99 16 3 H 0.10 2.71 7.12 -2.39 -0.02 2.69 16 4 C -0.09 -2.21 3.79 30.59 0.12 -2.09 16 5 C -0.10 -2.47 2.75 -9.72 -0.03 -2.50 16 6 C -0.12 -2.56 5.70 31.89 0.18 -2.38 16 7 C -0.13 -2.39 6.83 31.67 0.22 -2.18 16 8 C -0.12 -2.14 6.80 31.32 0.21 -1.93 16 9 C -0.12 -2.51 6.37 31.32 0.20 -2.31 16 10 C 0.53 21.92 6.00 87.66 0.53 22.45 16 11 O -0.60 -28.39 16.85 -3.02 -0.05 -28.44 16 12 N -0.64 -27.47 3.69 -858.17 -3.16 -30.63 16 13 C 0.09 3.82 7.63 83.27 0.64 4.45 16 14 C 0.22 10.68 1.58 -11.12 -0.02 10.66 16 15 O -0.59 -31.09 13.55 -148.98 -2.02 -33.11 16 16 C -0.55 -27.54 8.70 25.60 0.22 -27.32 16 17 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 18 C 0.03 1.64 5.39 84.65 0.46 2.10 16 19 N -0.92 -45.84 11.01 21.44 0.24 -45.61 16 20 Si 0.97 38.92 29.54 68.60 2.03 40.94 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.10 4.65 8.02 83.18 0.67 5.31 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.10 1.99 8.14 -2.38 -0.02 1.98 16 28 H 0.10 1.92 7.98 -2.39 -0.02 1.90 16 29 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 30 H 0.04 1.20 7.12 -2.38 -0.02 1.18 16 31 H 0.05 1.27 7.97 -2.39 -0.02 1.26 16 32 H 0.09 1.53 7.94 -2.39 -0.02 1.52 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 1.43 7.84 -2.39 -0.02 1.41 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.09 3.65 8.10 -2.39 -0.02 3.63 16 40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.39 20.77 6.32 -74.06 -0.47 20.30 16 42 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 43 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.10 4.10 8.10 -2.39 -0.02 4.08 16 Total: -1.00 -59.79 350.99 1.55 -58.25 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: 0.50 Total: 40.37 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 4.02 Total: -1.76 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.93 Total: -76.24 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -2.07 Total: -61.55 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Total: -59.79 1.55 -58.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408384095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.507 kcal (2) G-P(sol) polarization free energy of solvation -59.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds