Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99489 * 2 1 4 4 O 1.20824 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99754 * 179.97438 * 3 2 1 6 6 H 1.09002 * 115.56902 * 34.33120 * 5 3 2 7 7 C 1.53045 * 117.50513 * 248.61208 * 5 3 2 8 8 C 1.52755 * 59.97228 * 252.54353 * 7 5 3 9 9 C 1.53226 * 117.78537 * 252.16293 * 8 7 5 10 10 C 1.53256 * 108.62531 * 265.98079 * 9 8 7 11 11 N 1.46815 * 109.44867 * 304.43196 * 10 9 8 12 12 C 1.46905 * 110.99755 * 189.19568 * 11 10 9 13 13 H 1.09000 * 109.47223 * 53.08087 * 12 11 10 14 14 C 1.52994 * 109.47358 * 293.07485 * 12 11 10 15 15 C 1.53000 * 109.46938 * 173.07586 * 12 11 10 16 16 C 1.50704 * 109.47304 * 295.80909 * 15 12 11 17 17 H 1.08004 * 119.99891 * 5.02553 * 16 15 12 18 18 C 1.37879 * 120.00475 * 185.02196 * 16 15 12 19 19 N 1.31507 * 120.00335 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99610 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46770 * 89.99849 * 20 18 16 22 22 H 1.48496 * 109.46952 * 209.99930 * 20 18 16 23 23 H 1.48505 * 109.47004 * 330.00039 * 20 18 16 24 24 C 1.46800 * 111.58838 * 64.81910 * 11 10 9 25 25 C 1.53221 * 117.78906 * 107.80789 * 8 7 5 26 26 H 1.08998 * 109.46744 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47239 * 299.99270 * 1 2 3 28 28 H 1.09000 * 109.47196 * 60.00246 * 1 2 3 29 29 H 1.09005 * 117.51080 * 145.05878 * 7 5 3 30 30 H 1.08999 * 117.50896 * 0.02562 * 7 5 3 31 31 H 1.09001 * 109.60673 * 25.72326 * 9 8 7 32 32 H 1.08997 * 109.61124 * 146.23786 * 9 8 7 33 33 H 1.09000 * 109.47782 * 184.43471 * 10 9 8 34 34 H 1.09004 * 109.47611 * 64.42231 * 10 9 8 35 35 H 1.09000 * 109.47359 * 60.00033 * 14 12 11 36 36 H 1.09000 * 109.47497 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.47049 * 300.00181 * 14 12 11 38 38 H 1.09005 * 109.47401 * 55.80810 * 15 12 11 39 39 H 1.09002 * 109.47134 * 175.81203 * 15 12 11 40 40 H 0.96998 * 119.99934 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47673 * 175.18907 * 24 11 10 42 42 H 1.09003 * 109.47535 * 55.17055 * 24 11 10 43 43 H 1.08996 * 109.60993 * 213.75710 * 25 8 7 44 44 H 1.09001 * 109.60765 * 334.27600 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0788 0.4887 -0.5536 7 6 4.2457 1.8066 1.2647 8 6 4.2000 2.6658 0.0025 9 6 5.5046 2.8593 -0.7775 10 6 6.1702 4.1560 -0.3041 11 7 5.2278 5.2719 -0.4530 12 6 5.8950 6.5593 -0.2174 13 1 6.7775 6.6329 -0.8528 14 6 6.3141 6.6554 1.2509 15 6 4.9317 7.7010 -0.5485 16 6 4.5994 7.6677 -2.0180 17 1 4.9663 6.8619 -2.6365 18 6 3.8270 8.6659 -2.5730 19 7 3.5367 8.6366 -3.8553 20 14 3.1930 10.0600 -1.5034 21 1 4.1808 11.1688 -1.4986 22 1 1.9004 10.5509 -2.0450 23 1 2.9938 9.5685 -0.1163 24 6 4.0619 5.1151 0.4251 25 6 3.2636 3.8786 -0.0026 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.2052 1.3702 1.5422 30 1 3.6042 2.0989 2.0961 31 1 6.1706 2.0168 -0.5910 32 1 5.2868 2.9277 -1.8433 33 1 7.0592 4.3485 -0.9046 34 1 6.4539 4.0574 0.7438 35 1 7.0004 5.8420 1.4868 36 1 6.8087 7.6108 1.4259 37 1 5.4314 6.5818 1.8863 38 1 4.0172 7.5852 0.0335 39 1 5.4001 8.6542 -0.3034 40 1 2.9936 9.3391 -4.2458 41 1 3.4293 5.9996 0.3506 42 1 4.3966 4.9931 1.4552 43 1 2.8655 4.0292 -1.0060 44 1 2.4449 3.7116 0.6974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411275556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = -54.094509 kcal Electronic energy + Delta-G solvation = -23163.029102 eV Core-core repulsion = 19888.442090 eV Total energy + Delta-G solvation = -3274.587013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88196 -39.20227 -37.23337 -36.06633 -33.09214 -31.70403 -30.59316 -28.69777 -27.96204 -27.35944 -24.35870 -23.29025 -23.07718 -21.89470 -20.47032 -19.27663 -18.09327 -17.67221 -16.55014 -16.47846 -16.28752 -15.63122 -14.79302 -14.51451 -14.25142 -13.92963 -13.72336 -13.27381 -13.10121 -13.03421 -12.74667 -12.36314 -12.27802 -12.08414 -11.96479 -11.89273 -11.64410 -11.32388 -11.07585 -10.95947 -10.84965 -10.59486 -10.41356 -10.23228 -9.98674 -9.79973 -9.58932 -9.53354 -9.41319 -8.95547 -8.37459 -7.41609 -5.86257 -3.80010 2.07182 2.57283 3.38568 3.46730 3.49454 3.66797 4.51862 4.52937 4.58567 4.61366 4.74114 4.95215 4.97496 5.04167 5.10844 5.35274 5.44530 5.48805 5.54821 5.57433 5.69080 5.72966 5.79260 5.83172 5.88029 5.95569 6.01663 6.15265 6.20439 6.25625 6.31226 6.44423 6.49393 6.60912 6.71129 6.80587 6.90127 7.16677 7.42756 7.75483 7.87839 7.93079 8.03472 8.77914 9.28395 9.77251 11.27828 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.004782 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.525603 B = 5853.974848 C = 6734.518296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.488 3.512 4 O -0.492 6.492 5 C -0.170 4.170 6 H 0.132 0.868 7 C -0.146 4.146 8 C -0.070 4.070 9 C -0.079 4.079 10 C 0.060 3.940 11 N -0.510 5.510 12 C 0.097 3.903 13 H 0.075 0.925 14 C -0.186 4.186 15 C -0.008 4.008 16 C -0.490 4.490 17 H 0.081 0.919 18 C 0.062 3.938 19 N -0.908 5.908 20 Si 0.871 3.129 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.269 1.269 24 C 0.058 3.942 25 C -0.077 4.077 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.087 0.913 42 H 0.021 0.979 43 H 0.080 0.920 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -17.320 11.314 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.332 3.668 4 O -0.378 6.378 5 C -0.189 4.189 6 H 0.150 0.850 7 C -0.183 4.183 8 C -0.070 4.070 9 C -0.117 4.117 10 C -0.068 4.068 11 N -0.234 5.234 12 C -0.011 4.011 13 H 0.093 0.907 14 C -0.245 4.245 15 C -0.045 4.045 16 C -0.528 4.528 17 H 0.099 0.901 18 C -0.138 4.138 19 N -0.548 5.548 20 Si 0.700 3.300 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.194 1.194 24 C -0.070 4.070 25 C -0.115 4.115 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.099 0.901 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.171 -16.924 10.691 20.019 hybrid contribution -0.408 0.711 1.264 1.506 sum -0.237 -16.213 11.955 20.146 Atomic orbital electron populations 1.23246 0.76455 1.03436 1.02687 1.86486 1.23261 1.33740 1.84334 1.22764 0.90582 0.81169 0.72330 1.90698 1.66892 1.35654 1.44588 1.21865 0.87988 1.02252 1.06763 0.85013 1.23155 1.01591 1.02481 0.91030 1.21801 0.97650 0.89646 0.97948 1.21277 0.92773 0.97106 1.00502 1.22002 0.95409 0.91041 0.98377 1.61792 1.07038 1.00950 1.53605 1.21675 0.97616 0.89787 0.92066 0.90690 1.22562 1.00801 1.01018 1.00157 1.19712 0.94124 0.92157 0.98505 1.21079 1.30706 1.09221 0.91830 0.90102 1.25012 0.96286 0.97811 0.94648 1.69909 1.39486 1.34191 1.11244 0.86921 0.78401 0.83266 0.81455 1.20630 1.21665 1.19389 1.22154 0.93185 0.98802 0.92815 1.21471 0.95533 0.90541 1.03919 0.88301 0.91980 0.91754 0.87496 0.88341 0.91798 0.90026 0.90971 0.95612 0.93771 0.92674 0.92995 0.96594 0.96864 0.93128 0.89505 0.96102 0.90106 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.26 10.57 -39.26 -0.41 -4.67 16 3 C 0.49 6.59 7.72 36.01 0.28 6.87 16 4 O -0.49 -8.01 12.89 -18.75 -0.24 -8.25 16 5 C -0.17 -1.98 6.04 -91.83 -0.55 -2.54 16 6 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 7 C -0.15 -1.56 9.62 -26.83 -0.26 -1.81 16 8 C -0.07 -0.94 2.02 -154.49 -0.31 -1.25 16 9 C -0.08 -1.03 5.87 -26.48 -0.16 -1.19 16 10 C 0.06 0.89 5.01 -3.74 -0.02 0.87 16 11 N -0.51 -9.53 4.23 -226.47 -0.96 -10.49 16 12 C 0.10 1.90 2.29 -67.71 -0.15 1.74 16 13 H 0.07 1.51 8.00 -51.93 -0.42 1.10 16 14 C -0.19 -3.02 8.51 37.15 0.32 -2.70 16 15 C -0.01 -0.18 3.36 -27.88 -0.09 -0.28 16 16 C -0.49 -14.00 9.38 -34.44 -0.32 -14.32 16 17 H 0.08 2.53 7.97 -52.48 -0.42 2.11 16 18 C 0.06 1.83 5.47 -17.82 -0.10 1.74 16 19 N -0.91 -28.67 13.96 55.43 0.77 -27.89 16 20 Si 0.87 22.23 27.37 -169.99 -4.65 17.58 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.27 -6.61 6.69 56.52 0.38 -6.23 16 24 C 0.06 1.04 4.57 -3.74 -0.02 1.02 16 25 C -0.08 -1.29 4.32 -26.48 -0.11 -1.41 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.05 7.99 -51.93 -0.41 0.64 16 34 H 0.03 0.36 6.93 -51.93 -0.36 0.00 16 35 H 0.04 0.63 6.79 -51.93 -0.35 0.28 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.84 6.58 -51.93 -0.34 0.49 16 38 H 0.02 0.39 5.48 -51.93 -0.28 0.10 16 39 H 0.01 0.31 7.29 -51.93 -0.38 -0.06 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 41 H 0.09 1.78 5.86 -51.93 -0.30 1.47 16 42 H 0.02 0.34 6.78 -51.93 -0.35 -0.01 16 43 H 0.08 1.59 8.12 -51.93 -0.42 1.17 16 44 H 0.08 1.36 6.01 -51.93 -0.31 1.05 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -32.61 339.96 -8.12 -40.74 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.32 Total: -0.27 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.44 Total: -11.87 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.18 Total: -38.38 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.66 Total: -12.92 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.65 Total: 17.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.61 -8.12 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411275556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.357 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds