Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34231 * 116.99489 * 2 1 4 4 O 1.20824 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99754 * 179.97438 * 3 2 1 6 6 H 1.09002 * 115.56902 * 34.33120 * 5 3 2 7 7 C 1.53045 * 117.50513 * 248.61208 * 5 3 2 8 8 C 1.52755 * 59.97228 * 252.54353 * 7 5 3 9 9 C 1.53226 * 117.78537 * 252.16293 * 8 7 5 10 10 C 1.53256 * 108.62531 * 265.98079 * 9 8 7 11 11 N 1.46815 * 109.44867 * 304.43196 * 10 9 8 12 12 C 1.46905 * 110.99755 * 189.19568 * 11 10 9 13 13 H 1.09000 * 109.47223 * 53.08087 * 12 11 10 14 14 C 1.52994 * 109.47358 * 293.07485 * 12 11 10 15 15 C 1.53000 * 109.46938 * 173.07586 * 12 11 10 16 16 C 1.50704 * 109.47304 * 295.80909 * 15 12 11 17 17 H 1.08004 * 119.99891 * 5.02553 * 16 15 12 18 18 C 1.37879 * 120.00475 * 185.02196 * 16 15 12 19 19 N 1.31507 * 120.00335 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99610 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46770 * 89.99849 * 20 18 16 22 22 H 1.48496 * 109.46952 * 209.99930 * 20 18 16 23 23 H 1.48505 * 109.47004 * 330.00039 * 20 18 16 24 24 C 1.46800 * 111.58838 * 64.81910 * 11 10 9 25 25 C 1.53221 * 117.78906 * 107.80789 * 8 7 5 26 26 H 1.08998 * 109.46744 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47239 * 299.99270 * 1 2 3 28 28 H 1.09000 * 109.47196 * 60.00246 * 1 2 3 29 29 H 1.09005 * 117.51080 * 145.05878 * 7 5 3 30 30 H 1.08999 * 117.50896 * 0.02562 * 7 5 3 31 31 H 1.09001 * 109.60673 * 25.72326 * 9 8 7 32 32 H 1.08997 * 109.61124 * 146.23786 * 9 8 7 33 33 H 1.09000 * 109.47782 * 184.43471 * 10 9 8 34 34 H 1.09004 * 109.47611 * 64.42231 * 10 9 8 35 35 H 1.09000 * 109.47359 * 60.00033 * 14 12 11 36 36 H 1.09000 * 109.47497 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.47049 * 300.00181 * 14 12 11 38 38 H 1.09005 * 109.47401 * 55.80810 * 15 12 11 39 39 H 1.09002 * 109.47134 * 175.81203 * 15 12 11 40 40 H 0.96998 * 119.99934 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47673 * 175.18907 * 24 11 10 42 42 H 1.09003 * 109.47535 * 55.17055 * 24 11 10 43 43 H 1.08996 * 109.60993 * 213.75710 * 25 8 7 44 44 H 1.09001 * 109.60765 * 334.27600 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0788 0.4887 -0.5536 7 6 4.2457 1.8066 1.2647 8 6 4.2000 2.6658 0.0025 9 6 5.5046 2.8593 -0.7775 10 6 6.1702 4.1560 -0.3041 11 7 5.2278 5.2719 -0.4530 12 6 5.8950 6.5593 -0.2174 13 1 6.7775 6.6329 -0.8528 14 6 6.3141 6.6554 1.2509 15 6 4.9317 7.7010 -0.5485 16 6 4.5994 7.6677 -2.0180 17 1 4.9663 6.8619 -2.6365 18 6 3.8270 8.6659 -2.5730 19 7 3.5367 8.6366 -3.8553 20 14 3.1930 10.0600 -1.5034 21 1 4.1808 11.1688 -1.4986 22 1 1.9004 10.5509 -2.0450 23 1 2.9938 9.5685 -0.1163 24 6 4.0619 5.1151 0.4251 25 6 3.2636 3.8786 -0.0026 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.2052 1.3702 1.5422 30 1 3.6042 2.0989 2.0961 31 1 6.1706 2.0168 -0.5910 32 1 5.2868 2.9277 -1.8433 33 1 7.0592 4.3485 -0.9046 34 1 6.4539 4.0574 0.7438 35 1 7.0004 5.8420 1.4868 36 1 6.8087 7.6108 1.4259 37 1 5.4314 6.5818 1.8863 38 1 4.0172 7.5852 0.0335 39 1 5.4001 8.6542 -0.3034 40 1 2.9936 9.3391 -4.2458 41 1 3.4293 5.9996 0.3506 42 1 4.3966 4.9931 1.4552 43 1 2.8655 4.0292 -1.0060 44 1 2.4449 3.7116 0.6974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411275556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = -74.924809 kcal Electronic energy + Delta-G solvation = -23163.932372 eV Core-core repulsion = 19888.442090 eV Total energy + Delta-G solvation = -3275.490282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91993 -40.38713 -38.42596 -37.17029 -34.99650 -33.42356 -31.86759 -30.18493 -29.25485 -28.51712 -25.27802 -24.96606 -24.38949 -23.36604 -21.50422 -20.71816 -19.30112 -18.76407 -18.67304 -17.50481 -17.27702 -17.00627 -16.40646 -15.86979 -15.53022 -15.29473 -14.89638 -14.70331 -14.30508 -14.23914 -14.18624 -13.96782 -13.69722 -13.35562 -13.13358 -13.04883 -12.86563 -12.78172 -12.55074 -12.35637 -12.05976 -11.97828 -11.80020 -11.61341 -11.55241 -11.31323 -11.24924 -10.89145 -10.87286 -10.66024 -10.64875 -8.77723 -8.17419 -6.15660 1.05053 1.34175 1.37027 1.47619 1.69245 2.41258 2.71289 3.12427 3.27303 3.53336 3.66963 3.79947 3.98080 4.05903 4.18825 4.29071 4.30230 4.36814 4.39704 4.46987 4.55642 4.62067 4.68118 4.69506 4.70388 4.82378 4.92699 4.97359 4.99550 5.02731 5.10107 5.13746 5.21308 5.24695 5.28771 5.34982 5.45554 5.53540 5.62639 5.76836 6.41595 6.54181 6.63510 6.75320 6.93807 7.45023 9.00248 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.004782 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.525603 B = 5853.974848 C = 6734.518296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.484 3.516 4 O -0.531 6.531 5 C -0.167 4.167 6 H 0.159 0.841 7 C -0.114 4.114 8 C -0.095 4.095 9 C -0.071 4.071 10 C 0.060 3.940 11 N -0.542 5.542 12 C 0.099 3.901 13 H 0.063 0.937 14 C -0.174 4.174 15 C -0.006 4.006 16 C -0.488 4.488 17 H 0.037 0.963 18 C -0.004 4.004 19 N -0.959 5.959 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.253 1.253 24 C 0.066 3.934 25 C -0.067 4.067 26 H 0.135 0.865 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.144 0.856 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.013 0.987 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.032 0.968 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -18.992 14.334 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.329 3.671 4 O -0.421 6.421 5 C -0.185 4.185 6 H 0.177 0.823 7 C -0.151 4.151 8 C -0.095 4.095 9 C -0.109 4.109 10 C -0.068 4.068 11 N -0.266 5.266 12 C -0.010 4.010 13 H 0.082 0.918 14 C -0.233 4.233 15 C -0.043 4.043 16 C -0.527 4.527 17 H 0.055 0.945 18 C -0.198 4.198 19 N -0.602 5.602 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.217 1.217 23 H -0.177 1.177 24 C -0.062 4.062 25 C -0.105 4.105 26 H 0.153 0.847 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.161 0.839 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.518 -18.628 13.732 23.192 hybrid contribution -0.872 1.124 0.237 1.442 sum 0.646 -17.504 13.969 22.404 Atomic orbital electron populations 1.23521 0.75026 1.05658 1.02245 1.86479 1.24708 1.32709 1.83762 1.23236 0.91507 0.81056 0.71282 1.90692 1.67891 1.36969 1.46507 1.22016 0.86934 1.01483 1.08101 0.82314 1.23299 1.02760 0.99453 0.89586 1.21604 0.97409 0.89115 1.01421 1.21243 0.93238 0.97673 0.98746 1.22095 0.94603 0.90259 0.99824 1.61672 1.08306 1.01841 1.54822 1.21476 0.95902 0.89035 0.94546 0.91830 1.22399 1.01384 1.02568 0.96899 1.19666 0.95251 0.94480 0.94923 1.21325 1.29737 1.07485 0.94102 0.94501 1.25943 0.96839 1.01066 0.95979 1.70082 1.41023 1.35591 1.13486 0.85786 0.77784 0.79773 0.80011 1.19081 1.21725 1.17670 1.22008 0.92618 0.97659 0.93919 1.21223 0.96115 0.92313 1.00830 0.84736 0.92028 0.92690 0.83852 0.88440 0.87581 0.92752 0.91018 0.93239 0.91168 0.91894 0.92862 0.96840 0.96263 0.93139 0.93240 0.93814 0.94868 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -7.96 10.57 -51.43 -0.54 -8.50 16 3 C 0.48 12.69 7.72 71.24 0.55 13.24 16 4 O -0.53 -17.78 12.89 21.97 0.28 -17.50 16 5 C -0.17 -3.48 6.04 -11.58 -0.07 -3.55 16 6 H 0.16 2.46 8.14 -2.39 -0.02 2.45 16 7 C -0.11 -1.98 9.62 30.53 0.29 -1.68 16 8 C -0.10 -2.39 2.02 -52.17 -0.11 -2.50 16 9 C -0.07 -1.72 5.87 30.76 0.18 -1.54 16 10 C 0.06 1.66 5.01 86.41 0.43 2.09 16 11 N -0.54 -20.35 4.23 -870.40 -3.68 -24.03 16 12 C 0.10 3.84 2.29 44.91 0.10 3.95 16 13 H 0.06 2.58 8.00 -2.39 -0.02 2.56 16 14 C -0.17 -5.15 8.51 71.98 0.61 -4.53 16 15 C -0.01 -0.28 3.36 29.85 0.10 -0.18 16 16 C -0.49 -29.09 9.38 25.60 0.24 -28.85 16 17 H 0.04 2.46 7.97 -2.91 -0.02 2.43 16 18 C 0.00 -0.23 5.47 84.66 0.46 0.24 16 19 N -0.96 -63.21 13.96 21.45 0.30 -62.91 16 20 Si 0.94 46.68 27.37 68.60 1.88 48.56 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 23 H -0.25 -11.76 6.69 99.48 0.67 -11.09 16 24 C 0.07 2.37 4.57 86.41 0.40 2.77 16 25 C -0.07 -2.32 4.32 30.76 0.13 -2.18 16 26 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.04 8.13 -2.39 -0.02 1.03 16 28 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 29 H 0.14 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 34 H 0.05 1.16 6.93 -2.38 -0.02 1.14 16 35 H 0.07 1.73 6.79 -2.39 -0.02 1.71 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.56 6.58 -2.39 -0.02 1.55 16 38 H 0.01 0.66 5.48 -2.38 -0.01 0.65 16 39 H 0.02 0.90 7.29 -2.39 -0.02 0.88 16 40 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 41 H 0.05 2.11 5.86 -2.39 -0.01 2.09 16 42 H 0.04 1.36 6.78 -2.39 -0.02 1.34 16 43 H 0.03 1.41 8.12 -2.39 -0.02 1.39 16 44 H 0.08 2.68 6.01 -2.39 -0.01 2.66 16 Total: -1.00 -76.03 339.96 3.69 -72.34 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.93 Total: 13.10 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 4.53 Total: -21.06 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -3.38 Total: -86.94 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.26 Total: -26.00 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.88 Total: 48.56 kcal Total: -76.03 3.69 -72.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411275556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.585 kcal (2) G-P(sol) polarization free energy of solvation -76.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds