Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34234 * 116.99586 * 2 1 4 4 O 1.20824 * 120.00223 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99788 * 179.97438 * 3 2 1 6 6 H 1.09008 * 115.55165 * 32.35465 * 5 3 2 7 7 C 1.53037 * 117.50717 * 178.05627 * 5 3 2 8 8 C 1.52739 * 59.94514 * 107.50097 * 7 5 3 9 9 C 1.53213 * 117.84010 * 107.74024 * 8 7 5 10 10 C 1.53266 * 108.61964 * 197.00301 * 9 8 7 11 11 N 1.46803 * 109.44770 * 304.41213 * 10 9 8 12 12 C 1.46904 * 111.00333 * 189.19800 * 11 10 9 13 13 H 1.08995 * 109.47275 * 186.45002 * 12 11 10 14 14 C 1.52996 * 109.46854 * 306.45439 * 12 11 10 15 15 C 1.52998 * 109.46728 * 66.45221 * 12 11 10 16 16 C 1.50697 * 109.47328 * 62.76509 * 15 12 11 17 17 H 1.08000 * 120.00186 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99774 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99751 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46815 * 90.00304 * 20 18 16 22 22 H 1.48497 * 109.47016 * 210.00221 * 20 18 16 23 23 H 1.48505 * 109.46985 * 330.00503 * 20 18 16 24 24 C 1.46810 * 111.57771 * 64.82259 * 11 10 9 25 25 C 1.53215 * 117.84395 * 252.25686 * 8 7 5 26 26 H 1.08996 * 109.47615 * 299.99590 * 1 2 3 27 27 H 1.09002 * 109.47224 * 60.00170 * 1 2 3 28 28 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09001 * 117.50384 * 214.97528 * 7 5 3 30 30 H 1.09003 * 117.49835 * 0.02601 * 7 5 3 31 31 H 1.09005 * 109.61823 * 316.74505 * 9 8 7 32 32 H 1.09001 * 109.61543 * 77.26462 * 9 8 7 33 33 H 1.09003 * 109.47449 * 184.41760 * 10 9 8 34 34 H 1.09003 * 109.47129 * 64.40809 * 10 9 8 35 35 H 1.08998 * 109.47436 * 300.00091 * 14 12 11 36 36 H 1.09008 * 109.47278 * 59.99887 * 14 12 11 37 37 H 1.08999 * 109.47648 * 179.97438 * 14 12 11 38 38 H 1.09008 * 109.46639 * 182.76677 * 15 12 11 39 39 H 1.09000 * 109.47682 * 302.76299 * 15 12 11 40 40 H 0.96997 * 119.99960 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47801 * 175.17700 * 24 11 10 42 42 H 1.09004 * 109.47428 * 55.16384 * 24 11 10 43 43 H 1.09000 * 109.61670 * 282.73684 * 25 8 7 44 44 H 1.09004 * 109.60967 * 43.26165 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 4.0795 0.4699 -0.5254 7 6 4.2011 2.6667 -0.0455 8 6 4.2427 1.8492 1.2440 9 6 5.5872 1.2488 1.6674 10 6 5.3279 0.1516 2.7057 11 7 4.5577 0.7092 3.8241 12 6 4.4760 -0.2476 4.9359 13 1 3.8068 0.1427 5.7026 14 6 3.9371 -1.5835 4.4204 15 6 5.8692 -0.4558 5.5329 16 6 6.3719 0.8461 6.1014 17 1 5.7588 1.7333 6.0432 18 6 7.6141 0.9044 6.6968 19 7 8.3605 -0.1761 6.7682 20 14 8.2369 2.5181 7.4023 21 1 7.8247 2.6284 8.8247 22 1 9.7186 2.5588 7.3117 23 1 7.6625 3.6499 6.6312 24 6 3.2193 1.1363 3.3981 25 6 3.3461 2.2955 2.4035 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 5.1319 2.7772 -0.6018 30 1 3.5301 3.5252 -0.0758 31 1 6.0863 0.8198 0.7985 32 1 6.2135 2.0262 2.1053 33 1 6.2793 -0.2316 3.0748 34 1 4.7640 -0.6591 2.2444 35 1 2.9446 -1.4351 3.9950 36 1 4.6064 -1.9738 3.6536 37 1 3.8768 -2.2936 5.2451 38 1 5.8170 -1.2024 6.3254 39 1 6.5505 -0.7995 4.7545 40 1 9.2346 -0.1349 7.1867 41 1 2.6486 1.4637 4.2671 42 1 2.7065 0.3016 2.9200 43 1 3.7922 3.1569 2.9006 44 1 2.3597 2.5600 2.0223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411275559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = -64.584447 kcal Electronic energy + Delta-G solvation = -23389.767332 eV Core-core repulsion = 20114.725441 eV Total energy + Delta-G solvation = -3275.041890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94514 -39.17704 -37.20559 -36.13312 -33.11733 -31.61673 -30.68513 -28.55153 -27.75356 -27.19051 -24.57713 -23.30336 -23.03600 -21.75922 -20.71012 -19.32032 -18.28861 -17.69392 -16.63872 -16.37670 -16.11658 -15.47679 -14.74394 -14.54989 -14.35929 -14.02541 -13.84361 -13.24584 -13.11700 -12.87955 -12.72224 -12.27922 -12.17038 -12.02579 -11.92866 -11.67901 -11.56930 -11.18888 -10.99324 -10.87463 -10.84900 -10.73576 -10.53475 -10.39292 -10.20664 -9.91739 -9.85191 -9.68911 -9.11116 -8.93040 -8.23288 -7.40881 -5.86399 -3.83720 2.00530 2.54701 3.40554 3.46907 3.52089 3.68222 4.48733 4.55232 4.58940 4.66019 4.70786 4.88469 4.91501 4.98972 5.07549 5.31313 5.45799 5.51169 5.53069 5.63318 5.71306 5.77088 5.83054 5.87962 5.90637 6.00281 6.06412 6.09473 6.14978 6.24620 6.30573 6.37116 6.45717 6.57522 6.64438 6.76122 7.01874 7.58008 7.66170 7.71901 7.96458 8.06245 8.15607 8.61643 9.22616 9.77922 11.25635 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024500 B = 0.004556 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.596134 B = 6144.768130 C = 6655.112517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.497 3.503 4 O -0.510 6.510 5 C -0.175 4.175 6 H 0.131 0.869 7 C -0.140 4.140 8 C -0.072 4.072 9 C -0.079 4.079 10 C 0.059 3.941 11 N -0.509 5.509 12 C 0.087 3.913 13 H 0.068 0.932 14 C -0.183 4.183 15 C 0.030 3.970 16 C -0.487 4.487 17 H 0.061 0.939 18 C 0.050 3.950 19 N -0.905 5.905 20 Si 0.888 3.112 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.058 3.942 25 C -0.090 4.090 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.024 0.976 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.257 0.743 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.084 0.916 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 0.450 -14.575 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.341 3.659 4 O -0.399 6.399 5 C -0.194 4.194 6 H 0.149 0.851 7 C -0.177 4.177 8 C -0.072 4.072 9 C -0.117 4.117 10 C -0.069 4.069 11 N -0.233 5.233 12 C -0.021 4.021 13 H 0.086 0.914 14 C -0.242 4.242 15 C -0.007 4.007 16 C -0.526 4.526 17 H 0.079 0.921 18 C -0.149 4.149 19 N -0.546 5.546 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.199 1.199 24 C -0.071 4.071 25 C -0.128 4.128 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.657 1.096 -14.341 18.513 hybrid contribution -0.304 0.039 0.008 0.306 sum -11.960 1.135 -14.334 18.703 Atomic orbital electron populations 1.23258 0.76448 1.03646 1.02466 1.86511 1.23239 1.33382 1.84007 1.22661 0.90572 0.81134 0.71497 1.90633 1.66967 1.36401 1.45853 1.21978 0.87938 1.01329 1.08114 0.85076 1.23178 1.01898 0.92171 1.00425 1.21725 0.97478 0.99567 0.88447 1.21327 0.92946 0.99176 0.98228 1.22065 0.99551 0.94380 0.90883 1.61838 1.12959 1.40978 1.07483 1.21910 1.00886 0.87677 0.91587 0.91409 1.22517 0.99704 1.00495 1.01441 1.19200 0.88874 0.97245 0.95351 1.21172 1.00994 0.95653 1.34755 0.92080 1.24996 0.97167 0.95938 0.96762 1.69963 1.11157 1.27721 1.45763 0.86659 0.77690 0.84710 0.79297 1.21083 1.21628 1.19892 1.22034 0.91685 0.95900 0.97461 1.21394 0.98068 0.99287 0.94035 0.91844 0.92025 0.88139 0.87321 0.87444 0.91650 0.89448 0.89109 0.95751 0.94298 0.92842 0.92657 0.96434 0.96302 0.93382 0.91193 0.95941 0.89708 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.42 10.57 -39.27 -0.41 -4.83 16 3 C 0.50 6.66 6.69 36.01 0.24 6.90 16 4 O -0.51 -7.73 14.74 -18.75 -0.28 -8.01 16 5 C -0.17 -2.10 5.99 -91.87 -0.55 -2.65 16 6 H 0.13 1.37 8.14 -51.92 -0.42 0.95 16 7 C -0.14 -1.57 9.51 -26.85 -0.26 -1.82 16 8 C -0.07 -0.95 2.02 -154.54 -0.31 -1.26 16 9 C -0.08 -1.13 5.87 -26.48 -0.16 -1.28 16 10 C 0.06 1.01 4.46 -3.74 -0.02 0.99 16 11 N -0.51 -9.47 4.17 -226.47 -0.94 -10.42 16 12 C 0.09 1.76 2.27 -67.71 -0.15 1.60 16 13 H 0.07 1.40 7.92 -51.93 -0.41 0.99 16 14 C -0.18 -3.15 8.46 37.16 0.31 -2.84 16 15 C 0.03 0.76 4.36 -27.89 -0.12 0.64 16 16 C -0.49 -13.45 8.78 -34.44 -0.30 -13.75 16 17 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 18 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 19 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.06 0.93 5.11 -3.74 -0.02 0.91 16 25 C -0.09 -1.32 5.53 -26.48 -0.15 -1.47 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.11 1.26 7.67 -51.93 -0.40 0.86 16 31 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.77 6.08 -51.93 -0.32 1.45 16 34 H 0.02 0.40 6.77 -51.93 -0.35 0.04 16 35 H 0.04 0.61 6.94 -51.93 -0.36 0.25 16 36 H 0.05 0.91 6.53 -51.92 -0.34 0.57 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.02 0.50 6.28 -51.93 -0.33 0.17 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.02 0.36 7.05 -51.93 -0.37 -0.01 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 0.98 5.98 -51.93 -0.31 0.67 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -31.04 345.21 -8.58 -39.62 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -7.35 Total: -0.86 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.51 Total: -11.30 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.21 Total: -36.70 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.69 Total: -12.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -8.58 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411275559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.963 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds