Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 116.99565 * 2 1 4 4 O 1.20829 * 120.00311 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99777 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.57097 * 325.72016 * 5 3 2 7 7 C 1.53055 * 117.50197 * 111.43803 * 5 3 2 8 8 C 1.52731 * 117.50410 * 179.97438 * 5 3 2 9 9 C 1.53214 * 117.84309 * 144.78259 * 8 5 3 10 10 C 1.53262 * 108.62148 * 162.99030 * 9 8 5 11 11 N 1.46812 * 109.44470 * 55.60037 * 10 9 8 12 12 C 1.46900 * 111.00304 * 170.80170 * 11 10 9 13 13 H 1.09000 * 109.47326 * 177.78828 * 12 11 10 14 14 C 1.53004 * 109.46542 * 57.78866 * 12 11 10 15 15 C 1.53002 * 109.47408 * 297.79422 * 12 11 10 16 16 C 1.50704 * 109.46584 * 295.80775 * 15 12 11 17 17 H 1.07998 * 120.00316 * 5.01835 * 16 15 12 18 18 C 1.37878 * 119.99492 * 185.02737 * 16 15 12 19 19 N 1.31515 * 119.99836 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00227 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47065 * 90.00517 * 20 18 16 22 22 H 1.48501 * 109.47339 * 210.00421 * 20 18 16 23 23 H 1.48498 * 109.47469 * 330.00716 * 20 18 16 24 24 C 1.46807 * 111.57105 * 295.17354 * 11 10 9 25 25 C 1.53218 * 117.84721 * 0.27837 * 8 5 3 26 26 H 1.08998 * 109.46929 * 60.00735 * 1 2 3 27 27 H 1.09007 * 109.46727 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47538 * 300.00162 * 1 2 3 29 29 H 1.08996 * 117.51064 * 0.02562 * 7 5 3 30 30 H 1.09002 * 117.50446 * 214.93701 * 7 5 3 31 31 H 1.09004 * 109.61445 * 43.25521 * 9 8 5 32 32 H 1.08997 * 109.61259 * 282.73305 * 9 8 5 33 33 H 1.09001 * 109.48005 * 295.61026 * 10 9 8 34 34 H 1.09004 * 109.48352 * 175.59475 * 10 9 8 35 35 H 1.08998 * 109.47065 * 60.00439 * 14 12 11 36 36 H 1.09002 * 109.46645 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.47279 * 299.99991 * 14 12 11 38 38 H 1.09005 * 109.47141 * 55.80026 * 15 12 11 39 39 H 1.08998 * 109.47338 * 175.80539 * 15 12 11 40 40 H 0.97003 * 120.00088 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.47743 * 184.81811 * 24 11 10 42 42 H 1.08998 * 109.47560 * 304.84015 * 24 11 10 43 43 H 1.08996 * 109.60872 * 316.74420 * 25 8 5 44 44 H 1.08999 * 109.61393 * 77.27114 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0785 0.4884 0.5547 7 6 4.2466 1.8072 -1.2629 8 6 4.1997 2.6647 -0.0001 9 6 5.5033 2.8574 0.7816 10 6 6.1700 4.1541 0.3094 11 7 5.2281 5.2703 0.4584 12 6 5.8958 6.5576 0.2241 13 1 5.1671 7.3644 0.3020 14 6 6.5155 6.5633 -1.1748 15 6 6.9946 6.7599 1.2694 16 6 6.3732 6.8571 2.6389 17 1 5.3117 6.7014 2.7625 18 6 7.1599 7.1450 3.7340 19 7 6.6176 7.2303 4.9291 20 14 8.9960 7.4138 3.5202 21 1 9.2591 8.8528 3.2647 22 1 9.7051 6.9927 4.7552 23 1 9.4836 6.6098 2.3709 24 6 4.0629 5.1143 -0.4210 25 6 3.2638 3.8778 0.0053 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 3.6057 2.1007 -2.0943 30 1 5.2064 1.3709 -1.5397 31 1 6.1694 2.0148 0.5956 32 1 5.2843 2.9256 1.8472 33 1 6.4544 4.0559 -0.7382 34 1 7.0587 4.3458 0.9108 35 1 5.7328 6.4192 -1.9196 36 1 7.0114 7.5183 -1.3485 37 1 7.2443 5.7565 -1.2528 38 1 7.6825 5.9148 1.2417 39 1 7.5389 7.6788 1.0513 40 1 7.1711 7.4324 5.6996 41 1 3.4305 5.9990 -0.3469 42 1 4.3986 4.9926 -1.4509 43 1 2.4455 3.7116 -0.6952 44 1 2.8652 4.0280 1.0087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411275562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -54.545716 kcal Electronic energy + Delta-G solvation = -23076.992870 eV Core-core repulsion = 19802.386291 eV Total energy + Delta-G solvation = -3274.606578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91873 -39.21917 -37.25663 -36.09164 -33.10061 -31.70795 -30.62891 -28.68711 -27.98323 -27.37113 -24.38795 -23.28863 -23.12185 -21.85584 -20.49608 -19.31968 -18.06443 -17.71241 -16.57055 -16.51804 -16.35643 -15.55288 -14.80755 -14.57890 -14.29402 -13.96450 -13.69844 -13.27493 -13.15584 -12.92243 -12.85082 -12.35927 -12.26000 -12.13752 -12.03309 -11.85619 -11.61974 -11.31752 -11.06966 -11.00031 -10.88796 -10.60988 -10.45176 -10.19385 -9.97191 -9.84503 -9.70368 -9.55675 -9.38171 -8.96113 -8.39569 -7.41616 -5.87935 -3.81969 2.02747 2.54060 3.36624 3.44729 3.46755 3.66250 4.51421 4.53313 4.56357 4.61243 4.73878 4.90753 4.95328 4.99834 5.13402 5.31324 5.43512 5.49952 5.56815 5.59192 5.70855 5.72989 5.77608 5.83498 5.87445 5.96202 6.01875 6.12892 6.18067 6.30785 6.36273 6.43550 6.49019 6.60344 6.66599 6.73282 6.83815 7.14394 7.40877 7.70490 7.86669 7.92506 8.02349 8.76470 9.27447 9.75233 11.26073 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.004118 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.711759 B = 6797.819325 C = 7186.809367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.491 3.509 4 O -0.496 6.496 5 C -0.171 4.171 6 H 0.133 0.867 7 C -0.145 4.145 8 C -0.069 4.069 9 C -0.080 4.080 10 C 0.062 3.938 11 N -0.510 5.510 12 C 0.096 3.904 13 H 0.075 0.925 14 C -0.186 4.186 15 C -0.007 4.007 16 C -0.491 4.491 17 H 0.081 0.919 18 C 0.061 3.939 19 N -0.908 5.908 20 Si 0.872 3.128 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.269 1.269 24 C 0.057 3.943 25 C -0.076 4.076 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.070 0.930 42 H 0.023 0.977 43 H 0.081 0.919 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -13.941 -13.911 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.334 3.666 4 O -0.383 6.383 5 C -0.190 4.190 6 H 0.151 0.849 7 C -0.182 4.182 8 C -0.070 4.070 9 C -0.118 4.118 10 C -0.066 4.066 11 N -0.234 5.234 12 C -0.012 4.012 13 H 0.093 0.907 14 C -0.245 4.245 15 C -0.044 4.044 16 C -0.529 4.529 17 H 0.099 0.901 18 C -0.138 4.138 19 N -0.548 5.548 20 Si 0.700 3.300 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.194 1.194 24 C -0.072 4.072 25 C -0.114 4.114 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.041 0.959 43 H 0.100 0.900 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.130 -13.612 -13.239 20.283 hybrid contribution 1.063 0.052 -0.753 1.304 sum -6.067 -13.560 -13.991 20.407 Atomic orbital electron populations 1.23246 0.76477 1.03488 1.02602 1.86497 1.23243 1.33714 1.84241 1.22779 0.90582 0.81121 0.72076 1.90666 1.66965 1.35719 1.44981 1.21874 0.87882 1.02401 1.06818 0.84910 1.23153 1.01620 1.02520 0.90935 1.21772 0.97764 0.89410 0.98028 1.21309 0.92465 0.97335 1.00695 1.22036 0.96278 0.90027 0.98299 1.61784 1.07442 1.01656 1.52487 1.21682 0.96877 0.90496 0.92134 0.90669 1.22563 1.00718 1.01712 0.99540 1.19709 0.93656 0.95778 0.95301 1.21094 0.97111 1.45581 0.89100 0.90072 1.25025 0.97734 0.95644 0.95415 1.69918 1.35437 1.50728 0.98714 0.86915 0.87049 0.78616 0.77395 1.20639 1.21681 1.19402 1.22127 0.93280 0.98033 0.93713 1.21449 0.95536 0.90825 1.03565 0.92012 0.88269 0.91785 0.88396 0.87411 0.91790 0.89728 0.95840 0.89327 0.93741 0.92677 0.93020 0.96633 0.96861 0.93117 0.91159 0.95869 0.90038 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.11 10.57 -39.25 -0.41 -4.52 16 3 C 0.49 6.37 7.72 36.01 0.28 6.65 16 4 O -0.50 -7.57 12.89 -18.75 -0.24 -7.81 16 5 C -0.17 -1.99 6.04 -91.88 -0.55 -2.55 16 6 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 7 C -0.15 -1.55 9.62 -26.85 -0.26 -1.81 16 8 C -0.07 -0.93 2.01 -154.57 -0.31 -1.24 16 9 C -0.08 -1.16 5.87 -26.49 -0.16 -1.32 16 10 C 0.06 1.03 4.57 -3.74 -0.02 1.01 16 11 N -0.51 -9.53 4.23 -226.45 -0.96 -10.49 16 12 C 0.10 1.89 2.29 -67.71 -0.15 1.74 16 13 H 0.08 1.55 8.00 -51.93 -0.42 1.13 16 14 C -0.19 -3.01 8.51 37.16 0.32 -2.70 16 15 C -0.01 -0.17 3.36 -27.88 -0.09 -0.26 16 16 C -0.49 -13.86 9.38 -34.44 -0.32 -14.18 16 17 H 0.08 2.53 7.96 -52.49 -0.42 2.11 16 18 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 19 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 20 Si 0.87 21.83 27.37 -169.99 -4.65 17.17 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.27 -6.43 6.69 56.52 0.38 -6.06 16 24 C 0.06 0.91 5.01 -3.74 -0.02 0.89 16 25 C -0.08 -1.17 4.32 -26.48 -0.11 -1.29 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.55 8.13 -51.94 -0.42 0.13 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.02 0.36 6.78 -51.93 -0.35 0.01 16 34 H 0.09 1.66 5.86 -51.93 -0.30 1.36 16 35 H 0.04 0.65 6.79 -51.93 -0.35 0.30 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.81 6.58 -51.93 -0.34 0.47 16 38 H 0.02 0.37 5.48 -51.93 -0.28 0.08 16 39 H 0.01 0.31 7.29 -51.93 -0.38 -0.07 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.07 1.14 7.99 -51.93 -0.41 0.73 16 42 H 0.02 0.35 6.93 -51.93 -0.36 -0.01 16 43 H 0.08 1.23 6.00 -51.93 -0.31 0.92 16 44 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -32.04 339.94 -8.12 -40.16 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.31 Total: -0.06 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.44 Total: -11.99 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.18 Total: -38.08 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.66 Total: -12.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.65 Total: 17.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.04 -8.12 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411275562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.385 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds