Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99525 * 2 1 4 4 C 1.53002 * 109.47075 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46942 * 185.10418 * 4 3 2 6 6 C 1.50700 * 112.84903 * 306.27908 * 5 4 3 7 7 O 1.21278 * 119.99508 * 123.62104 * 6 5 4 8 8 N 1.34777 * 120.00302 * 303.62178 * 6 5 4 9 9 C 1.46494 * 120.00083 * 174.93924 * 8 6 5 10 10 C 1.52994 * 109.47205 * 185.08422 * 9 8 6 11 11 C 1.50699 * 115.55956 * 268.54257 * 10 9 8 12 12 H 1.08007 * 119.99689 * 140.85601 * 11 10 9 13 13 C 1.37877 * 120.00281 * 320.85551 * 11 10 9 14 14 N 1.31505 * 119.99853 * 348.06867 * 13 11 10 15 15 Si 1.86800 * 119.99894 * 168.07311 * 13 11 10 16 16 H 1.48494 * 109.47390 * 59.99869 * 15 13 11 17 17 H 1.48505 * 109.46935 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47123 * 299.99667 * 15 13 11 19 19 C 1.53000 * 117.50083 * 54.23337 * 10 9 8 20 20 C 1.53004 * 60.03251 * 107.48211 * 19 10 9 21 21 C 1.53779 * 113.61744 * 77.48283 * 5 4 3 22 22 C 1.53959 * 87.02064 * 89.22758 * 21 5 4 23 23 C 1.53777 * 87.11106 * 25.36327 * 22 21 5 24 24 H 1.09000 * 109.46944 * 60.00283 * 1 2 3 25 25 H 1.09002 * 109.46800 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47402 * 300.00060 * 1 2 3 27 27 H 1.09005 * 109.47341 * 59.99967 * 3 2 1 28 28 H 1.09007 * 109.47341 * 299.99795 * 3 2 1 29 29 H 1.08993 * 109.47155 * 65.09703 * 4 3 2 30 30 H 1.09002 * 109.46616 * 305.09577 * 4 3 2 31 31 H 0.97001 * 119.99947 * 354.93873 * 8 6 5 32 32 H 1.08997 * 109.47210 * 65.07884 * 9 8 6 33 33 H 1.09000 * 109.46995 * 305.08551 * 9 8 6 34 34 H 0.97003 * 120.00339 * 185.01065 * 14 13 11 35 35 H 1.08998 * 117.50138 * 214.97767 * 19 10 9 36 36 H 1.08996 * 117.49758 * 359.97438 * 19 10 9 37 37 H 1.08995 * 117.49798 * 107.50658 * 20 19 10 38 38 H 1.09005 * 117.49367 * 252.52523 * 20 19 10 39 39 H 1.09001 * 113.61358 * 203.74594 * 21 5 4 40 40 H 1.09003 * 113.61278 * 334.64800 * 21 5 4 41 41 H 1.09005 * 113.53608 * 270.81298 * 22 21 5 42 42 H 1.08998 * 113.66398 * 139.93548 * 22 21 5 43 43 H 1.09001 * 113.61326 * 220.09063 * 23 22 21 44 44 H 1.09000 * 113.61693 * 89.18870 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1572 2.5769 0.1277 6 6 3.6516 3.5419 -0.9136 7 8 3.1392 4.5872 -0.5735 8 7 3.7688 3.2433 -2.2226 9 6 3.1793 4.1272 -3.2312 10 6 3.3431 3.5003 -4.6171 11 6 4.5912 3.8928 -5.3649 12 1 5.1247 3.1572 -5.9487 13 6 5.0522 5.1908 -5.3037 14 7 4.2912 6.1355 -4.7958 15 14 6.7575 5.6074 -5.9422 16 1 6.8437 5.2637 -7.3843 17 1 7.0116 7.0597 -5.7639 18 1 7.7725 4.8304 -5.1866 19 6 2.8194 2.0764 -4.8148 20 6 2.0738 3.2583 -5.4379 21 6 4.1194 3.1390 1.5586 22 6 5.4811 2.4545 1.7774 23 6 5.6895 2.5576 0.2573 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.8631 0.7250 -0.9329 30 1 3.8513 0.5670 0.8400 31 1 4.2435 2.4431 -2.4969 32 1 3.6838 5.0931 -3.2073 33 1 2.1193 4.2657 -3.0180 34 1 4.5850 7.0597 -4.8187 35 1 3.3777 1.4234 -5.4857 36 1 2.3586 1.5860 -3.9574 37 1 2.1416 3.3828 -6.5186 38 1 1.1225 3.5457 -4.9900 39 1 4.1658 4.2272 1.6016 40 1 3.3179 2.7240 2.1697 41 1 5.3998 1.4292 2.1384 42 1 6.1839 3.0538 2.3561 43 1 6.1536 1.6739 -0.1807 44 1 6.1659 3.4865 -0.0562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431097189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -48.928533 kcal Electronic energy + Delta-G solvation = -23296.027207 eV Core-core repulsion = 20021.664208 eV Total energy + Delta-G solvation = -3274.362999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41948 -37.87061 -37.48389 -36.44304 -33.15674 -32.26646 -31.43566 -27.35914 -26.30041 -25.68839 -25.40527 -24.42502 -22.61304 -21.37328 -20.33948 -19.26039 -18.24500 -17.06347 -16.45452 -16.09910 -15.91827 -15.16885 -15.04117 -14.86167 -14.76820 -14.12706 -14.01432 -13.46106 -13.27525 -12.84446 -12.39318 -12.30876 -12.19389 -11.70536 -11.62880 -11.52842 -11.30487 -11.10143 -10.99605 -10.91934 -10.81437 -10.53747 -10.41447 -10.35364 -10.19907 -9.65663 -9.60621 -9.15350 -8.97450 -8.83888 -8.28037 -7.91444 -6.10740 -4.17484 3.23945 3.26038 3.31212 3.32432 3.63384 3.96208 4.30542 4.51462 4.67574 4.82153 4.87383 4.94345 5.12316 5.17204 5.28559 5.32504 5.43113 5.46170 5.54597 5.58682 5.63673 5.73168 5.88104 5.89939 5.94086 5.98276 6.06604 6.12348 6.26188 6.30491 6.47405 6.49686 6.59637 6.70968 6.92518 7.04442 7.11330 7.26112 7.44905 7.61367 7.98914 8.33053 8.38646 8.78427 8.99178 9.42734 10.89744 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.005718 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.967802 B = 4895.369726 C = 5974.311670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.060 3.940 4 C -0.087 4.087 5 C -0.107 4.107 6 C 0.516 3.484 7 O -0.553 6.553 8 N -0.706 5.706 9 C 0.142 3.858 10 C 0.041 3.959 11 C -0.493 4.493 12 H 0.062 0.938 13 C 0.070 3.930 14 N -0.873 5.873 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.209 4.209 20 C -0.194 4.194 21 C -0.113 4.113 22 C -0.141 4.141 23 C -0.120 4.120 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.394 0.606 32 H 0.122 0.878 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -9.778 11.049 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.017 4.017 4 C -0.125 4.125 5 C -0.110 4.110 6 C 0.301 3.699 7 O -0.432 6.432 8 N -0.354 5.354 9 C 0.021 3.979 10 C 0.040 3.960 11 C -0.530 4.530 12 H 0.080 0.920 13 C -0.133 4.133 14 N -0.510 5.510 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.246 4.246 20 C -0.232 4.232 21 C -0.151 4.151 22 C -0.178 4.178 23 C -0.158 4.158 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.228 0.772 32 H 0.140 0.860 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.589 -8.971 11.347 14.552 hybrid contribution 0.666 0.098 -0.725 0.990 sum -0.923 -8.873 10.622 13.871 Atomic orbital electron populations 1.22720 0.81120 1.02455 1.00143 1.87815 1.19671 1.28185 1.95505 1.22545 0.93852 0.84367 1.00893 1.21206 0.93135 0.94265 1.03855 1.22097 0.97720 0.95064 0.96150 1.20141 0.79478 0.86886 0.83432 1.90648 1.45580 1.25584 1.81360 1.46212 1.55729 1.27859 1.05625 1.21397 0.96001 0.96150 0.84395 1.19188 0.93160 0.91130 0.92495 1.20505 1.07573 0.95241 1.29731 0.91994 1.24998 0.97344 0.96286 0.94681 1.69750 1.36658 1.00561 1.44046 0.86612 0.84511 0.77394 0.79280 1.20192 1.21131 1.20026 1.22853 1.06646 0.92625 1.02514 1.22974 0.96999 1.03845 0.99415 1.22873 0.97200 1.01595 0.93395 1.22876 0.97722 1.00945 0.96298 1.22893 0.93069 1.03167 0.96642 0.93920 0.89755 0.94236 0.93107 0.92834 0.90282 0.90096 0.77242 0.86025 0.94866 0.92362 0.90505 0.91366 0.90199 0.91675 0.88774 0.91321 0.90058 0.91211 0.90562 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.37 10.70 -35.23 -0.38 -5.75 16 3 C 0.06 0.83 5.50 37.16 0.20 1.04 16 4 C -0.09 -1.11 4.87 -26.73 -0.13 -1.24 16 5 C -0.11 -1.52 0.82 -154.85 -0.13 -1.65 16 6 C 0.52 9.85 5.64 -10.99 -0.06 9.79 16 7 O -0.55 -12.70 15.99 5.56 0.09 -12.62 16 8 N -0.71 -14.06 5.31 -60.30 -0.32 -14.38 16 9 C 0.14 3.39 5.43 -4.05 -0.02 3.37 16 10 C 0.04 0.98 1.85 -155.62 -0.29 0.69 16 11 C -0.49 -12.84 9.01 -34.44 -0.31 -13.15 16 12 H 0.06 1.60 7.84 -52.48 -0.41 1.18 16 13 C 0.07 1.86 5.15 -17.82 -0.09 1.77 16 14 N -0.87 -24.13 10.88 55.43 0.60 -23.53 16 15 Si 0.89 20.48 29.56 -169.99 -5.02 15.45 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.21 -4.29 9.45 -26.73 -0.25 -4.54 16 20 C -0.19 -4.32 9.89 -26.69 -0.26 -4.59 16 21 C -0.11 -1.47 6.81 -25.83 -0.18 -1.64 16 22 C -0.14 -1.50 7.74 -25.83 -0.20 -1.70 16 23 C -0.12 -1.50 7.22 -25.92 -0.19 -1.69 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.68 7.50 -51.93 -0.39 0.29 16 28 H 0.05 0.85 7.45 -51.92 -0.39 0.46 16 29 H 0.08 1.00 7.97 -51.93 -0.41 0.58 16 30 H 0.08 0.90 7.32 -51.93 -0.38 0.52 16 31 H 0.39 7.17 7.99 -40.82 -0.33 6.84 16 32 H 0.12 3.35 5.24 -51.93 -0.27 3.07 16 33 H 0.03 0.81 7.87 -51.93 -0.41 0.40 16 34 H 0.27 7.08 8.32 -40.82 -0.34 6.74 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 38 H 0.06 1.39 8.03 -51.93 -0.42 0.97 16 39 H 0.09 1.40 7.54 -51.93 -0.39 1.00 16 40 H 0.07 0.81 7.57 -51.93 -0.39 0.42 16 41 H 0.08 0.74 7.62 -51.93 -0.40 0.35 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 44 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -29.39 355.58 -7.99 -37.38 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.52 Total: 10.18 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.79 Total: -12.09 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.28 Total: -37.91 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.29 Total: -18.36 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.39 -7.99 -37.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431097189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.552 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds