Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99463 * 2 1 4 4 C 1.50701 * 119.99980 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47213 * 354.99758 * 4 2 1 6 6 C 1.52994 * 109.47120 * 115.00057 * 4 2 1 7 7 C 1.50698 * 109.47153 * 184.99954 * 6 4 2 8 8 O 1.21277 * 120.00330 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00135 * 180.02562 * 7 6 4 10 10 C 1.46495 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47269 * 184.79147 * 10 9 7 12 12 C 1.50694 * 115.55114 * 294.81128 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20873 * 12 11 10 14 14 C 1.37875 * 120.00314 * 274.92789 * 12 11 10 15 15 N 1.31509 * 119.99913 * 355.42420 * 14 12 11 16 16 Si 1.86807 * 120.00040 * 175.41703 * 14 12 11 17 17 H 1.48494 * 109.47052 * 60.00642 * 16 14 12 18 18 H 1.48500 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47106 * 300.00083 * 16 14 12 20 20 C 1.53003 * 117.49834 * 80.48431 * 11 10 9 21 21 C 1.53006 * 117.49908 * 149.14426 * 11 10 9 22 22 O 1.42894 * 109.46882 * 234.99892 * 4 2 1 23 23 C 1.42901 * 114.00164 * 89.99945 * 22 4 2 24 24 C 1.53001 * 109.47235 * 180.02562 * 23 22 4 25 25 H 1.08001 * 120.00033 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00367 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47025 * 269.99633 * 3 2 1 28 28 H 1.08993 * 109.47589 * 30.00468 * 3 2 1 29 29 H 1.08997 * 109.46549 * 150.00430 * 3 2 1 30 30 H 1.09005 * 109.47336 * 64.99266 * 6 4 2 31 31 H 1.09009 * 109.47164 * 304.99888 * 6 4 2 32 32 H 0.96999 * 119.99637 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47395 * 64.78624 * 10 9 7 34 34 H 1.09007 * 109.47080 * 304.78945 * 10 9 7 35 35 H 0.97001 * 119.99960 * 184.99387 * 15 14 12 36 36 H 1.09003 * 117.50034 * 214.99852 * 20 11 10 37 37 H 1.09002 * 117.49971 * 0.02686 * 20 11 10 38 38 H 1.08996 * 117.49810 * 359.97342 * 21 11 10 39 39 H 1.08995 * 117.50078 * 144.97442 * 21 11 10 40 40 H 1.08993 * 109.47356 * 299.99590 * 23 22 4 41 41 H 1.08999 * 109.46783 * 60.00483 * 23 22 4 42 42 H 1.08996 * 109.47329 * 59.99619 * 24 23 22 43 43 H 1.09001 * 109.47359 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.46974 * 300.00122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0006 5 1 1.3586 -2.1317 0.0887 6 6 2.8465 -1.4414 -1.3079 7 6 3.5009 -2.7977 -1.3625 8 8 3.3558 -3.5784 -0.4458 9 7 4.2483 -3.1430 -2.4297 10 6 4.8841 -4.4617 -2.4830 11 6 5.7635 -4.5538 -3.7315 12 6 5.0318 -4.4965 -5.0476 13 1 4.9297 -3.5557 -5.5682 14 6 4.4976 -5.6460 -5.5901 15 7 4.7034 -6.8060 -5.0058 16 14 3.4814 -5.5556 -7.1550 17 1 4.3099 -4.9930 -8.2514 18 1 3.0250 -6.9185 -7.5282 19 1 2.3010 -4.6834 -6.9289 20 6 7.1517 -3.9139 -3.6665 21 6 7.0098 -5.4380 -3.6541 22 8 2.9709 -1.3317 1.1030 23 6 2.4139 -1.8775 2.3004 24 6 3.4680 -1.8557 3.4093 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 2.2451 1.6198 -1.0277 28 1 1.4744 2.0648 0.5139 29 1 3.0159 1.1748 0.5138 30 1 3.6117 -0.6665 -1.3557 31 1 2.1657 -1.3322 -2.1523 32 1 4.3647 -2.5185 -3.1627 33 1 4.1159 -5.2341 -2.5218 34 1 5.4987 -4.6050 -1.5942 35 1 4.3899 -7.6226 -5.4250 36 1 7.5358 -3.4514 -4.5758 37 1 7.4387 -3.4276 -2.7341 38 1 7.2034 -5.9537 -2.7135 39 1 7.3002 -5.9784 -4.5549 40 1 1.5539 -1.2816 2.6056 41 1 2.0983 -2.9048 2.1189 42 1 3.7834 -0.8283 3.5907 43 1 3.0433 -2.2725 4.3226 44 1 4.3284 -2.4514 3.1044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431098097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = -57.818217 kcal Electronic energy + Delta-G solvation = -22464.685782 eV Core-core repulsion = 19189.937298 eV Total energy + Delta-G solvation = -3274.748485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.48599 -38.06540 -36.57359 -35.16318 -33.19741 -31.96260 -31.60079 -29.98882 -27.47021 -26.40356 -25.26640 -23.35708 -22.65918 -21.13803 -19.66805 -19.19618 -18.84146 -16.80598 -16.67615 -16.09892 -15.47483 -15.16127 -14.83605 -14.55319 -14.34809 -13.97207 -13.74830 -13.56939 -13.28676 -12.94211 -12.60780 -12.47994 -12.21286 -12.01417 -11.74173 -11.64549 -11.52424 -11.40054 -11.03378 -10.97179 -10.95080 -10.72410 -10.54679 -10.22252 -9.57978 -9.43643 -9.35995 -9.13109 -9.02626 -8.48316 -8.22684 -8.04397 -6.07157 -4.17091 2.02386 3.26221 3.29867 3.32465 3.33455 3.76374 3.96819 4.34895 4.70376 4.84842 5.06234 5.17182 5.20084 5.24181 5.32902 5.38984 5.45908 5.47646 5.56006 5.58277 5.67476 5.80130 5.84776 5.91258 5.93742 6.03764 6.06973 6.17353 6.36348 6.43379 6.50344 6.60149 6.64618 6.72812 6.90883 7.13534 7.33857 7.38765 7.41772 7.55077 7.81003 8.34312 8.36489 8.83836 8.95962 9.49898 10.99998 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.004135 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.303255 B = 6770.461308 C = 7490.381004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 C -0.116 4.116 4 C 0.144 3.856 5 H 0.072 0.928 6 C -0.137 4.137 7 C 0.507 3.493 8 O -0.552 6.552 9 N -0.706 5.706 10 C 0.165 3.835 11 C 0.024 3.976 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.073 3.927 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.211 4.211 21 C -0.143 4.143 22 O -0.365 6.365 23 C 0.063 3.937 24 C -0.148 4.148 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 12.997 10.030 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.143 4.143 3 C -0.173 4.173 4 C 0.085 3.915 5 H 0.090 0.910 6 C -0.177 4.177 7 C 0.292 3.708 8 O -0.431 6.431 9 N -0.355 5.355 10 C 0.042 3.958 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.131 4.131 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.248 4.248 21 C -0.181 4.181 22 O -0.284 6.284 23 C -0.013 4.013 24 C -0.205 4.205 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.379 12.268 10.688 17.137 hybrid contribution -0.780 0.087 -1.324 1.539 sum -6.159 12.355 9.364 16.681 Atomic orbital electron populations 1.23757 0.95115 1.01992 1.01853 1.22350 0.95503 0.96838 0.99620 1.20773 1.00774 0.93684 1.02037 1.20712 0.90916 0.93303 0.86523 0.90988 1.21779 1.01245 0.96949 0.97744 1.20329 0.79456 0.88490 0.82502 1.90637 1.62074 1.53030 1.37310 1.45978 1.50242 1.18766 1.20514 1.20949 0.95838 0.82757 0.96282 1.19047 0.85302 0.99594 0.93745 1.20311 1.35218 0.94412 1.03818 0.92271 1.24986 0.95617 0.95511 0.96949 1.69981 1.45446 0.97515 1.38148 0.86694 0.80848 0.77187 0.83461 1.20277 1.21283 1.20168 1.23013 1.05159 0.96697 0.99918 1.22460 1.04330 0.90778 1.00506 1.87893 1.38287 1.83105 1.19139 1.22385 0.95945 0.97629 0.85362 1.21704 0.99675 1.02407 0.96755 0.88435 0.88228 0.91411 0.92276 0.91013 0.88362 0.87957 0.76628 0.91662 0.94310 0.92831 0.90434 0.91726 0.91873 0.89561 0.94258 0.92920 0.92342 0.91541 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 13.91 29.01 0.40 -1.48 16 2 C -0.14 -1.58 5.05 -101.07 -0.51 -2.09 16 3 C -0.12 -1.11 9.73 36.01 0.35 -0.76 16 4 C 0.14 1.97 1.87 -27.89 -0.05 1.92 16 5 H 0.07 1.06 7.25 -51.93 -0.38 0.68 16 6 C -0.14 -1.90 5.25 -27.89 -0.15 -2.05 16 7 C 0.51 9.44 7.71 -10.98 -0.08 9.35 16 8 O -0.55 -12.12 15.42 -8.87 -0.14 -12.26 16 9 N -0.71 -13.72 5.48 -60.30 -0.33 -14.05 16 10 C 0.16 3.77 5.50 -4.05 -0.02 3.75 16 11 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 12 C -0.50 -12.81 8.59 -34.44 -0.30 -13.11 16 13 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 14 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 15 N -0.88 -24.27 12.65 55.43 0.70 -23.56 16 16 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 21 C -0.14 -3.31 9.14 -26.69 -0.24 -3.55 16 22 O -0.37 -5.48 8.76 -49.66 -0.44 -5.92 16 23 C 0.06 0.83 6.46 37.16 0.24 1.07 16 24 C -0.15 -1.67 10.28 37.16 0.38 -1.29 16 25 H 0.10 0.94 7.84 -52.49 -0.41 0.53 16 26 H 0.10 0.83 8.04 -52.49 -0.42 0.41 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.07 0.75 7.72 -51.93 -0.40 0.35 16 30 H 0.10 1.22 8.04 -51.93 -0.42 0.80 16 31 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.40 7.08 8.33 -40.82 -0.34 6.74 16 33 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 34 H 0.04 0.89 8.09 -51.92 -0.42 0.47 16 35 H 0.26 7.00 8.32 -40.82 -0.34 6.67 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -29.67 370.66 -8.03 -37.70 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.82 Total: 7.85 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.57 Total: -10.78 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.37 Total: -37.62 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.57 Total: -18.18 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.67 -8.03 -37.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431098097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.119 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds