Wall clock time and date at job start Tue Mar 31 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99463 * 2 1 4 4 C 1.50701 * 119.99980 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47213 * 354.99758 * 4 2 1 6 6 C 1.52994 * 109.47120 * 115.00057 * 4 2 1 7 7 C 1.50698 * 109.47153 * 184.99954 * 6 4 2 8 8 O 1.21277 * 120.00330 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00135 * 180.02562 * 7 6 4 10 10 C 1.46495 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47269 * 184.79147 * 10 9 7 12 12 C 1.50694 * 115.55114 * 294.81128 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20873 * 12 11 10 14 14 C 1.37875 * 120.00314 * 274.92789 * 12 11 10 15 15 N 1.31509 * 119.99913 * 355.42420 * 14 12 11 16 16 Si 1.86807 * 120.00040 * 175.41703 * 14 12 11 17 17 H 1.48494 * 109.47052 * 60.00642 * 16 14 12 18 18 H 1.48500 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47106 * 300.00083 * 16 14 12 20 20 C 1.53003 * 117.49834 * 80.48431 * 11 10 9 21 21 C 1.53006 * 117.49908 * 149.14426 * 11 10 9 22 22 O 1.42894 * 109.46882 * 234.99892 * 4 2 1 23 23 C 1.42901 * 114.00164 * 89.99945 * 22 4 2 24 24 C 1.53001 * 109.47235 * 180.02562 * 23 22 4 25 25 H 1.08001 * 120.00033 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00367 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47025 * 269.99633 * 3 2 1 28 28 H 1.08993 * 109.47589 * 30.00468 * 3 2 1 29 29 H 1.08997 * 109.46549 * 150.00430 * 3 2 1 30 30 H 1.09005 * 109.47336 * 64.99266 * 6 4 2 31 31 H 1.09009 * 109.47164 * 304.99888 * 6 4 2 32 32 H 0.96999 * 119.99637 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47395 * 64.78624 * 10 9 7 34 34 H 1.09007 * 109.47080 * 304.78945 * 10 9 7 35 35 H 0.97001 * 119.99960 * 184.99387 * 15 14 12 36 36 H 1.09003 * 117.50034 * 214.99852 * 20 11 10 37 37 H 1.09002 * 117.49971 * 0.02686 * 20 11 10 38 38 H 1.08996 * 117.49810 * 359.97342 * 21 11 10 39 39 H 1.08995 * 117.50078 * 144.97442 * 21 11 10 40 40 H 1.08993 * 109.47356 * 299.99590 * 23 22 4 41 41 H 1.08999 * 109.46783 * 60.00483 * 23 22 4 42 42 H 1.08996 * 109.47329 * 59.99619 * 24 23 22 43 43 H 1.09001 * 109.47359 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.46974 * 300.00122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0006 5 1 1.3586 -2.1317 0.0887 6 6 2.8465 -1.4414 -1.3079 7 6 3.5009 -2.7977 -1.3625 8 8 3.3558 -3.5784 -0.4458 9 7 4.2483 -3.1430 -2.4297 10 6 4.8841 -4.4617 -2.4830 11 6 5.7635 -4.5538 -3.7315 12 6 5.0318 -4.4965 -5.0476 13 1 4.9297 -3.5557 -5.5682 14 6 4.4976 -5.6460 -5.5901 15 7 4.7034 -6.8060 -5.0058 16 14 3.4814 -5.5556 -7.1550 17 1 4.3099 -4.9930 -8.2514 18 1 3.0250 -6.9185 -7.5282 19 1 2.3010 -4.6834 -6.9289 20 6 7.1517 -3.9139 -3.6665 21 6 7.0098 -5.4380 -3.6541 22 8 2.9709 -1.3317 1.1030 23 6 2.4139 -1.8775 2.3004 24 6 3.4680 -1.8557 3.4093 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 2.2451 1.6198 -1.0277 28 1 1.4744 2.0648 0.5139 29 1 3.0159 1.1748 0.5138 30 1 3.6117 -0.6665 -1.3557 31 1 2.1657 -1.3322 -2.1523 32 1 4.3647 -2.5185 -3.1627 33 1 4.1159 -5.2341 -2.5218 34 1 5.4987 -4.6050 -1.5942 35 1 4.3899 -7.6226 -5.4250 36 1 7.5358 -3.4514 -4.5758 37 1 7.4387 -3.4276 -2.7341 38 1 7.2034 -5.9537 -2.7135 39 1 7.3002 -5.9784 -4.5549 40 1 1.5539 -1.2816 2.6056 41 1 2.0983 -2.9048 2.1189 42 1 3.7834 -0.8283 3.5907 43 1 3.0433 -2.2725 4.3226 44 1 4.3284 -2.4514 3.1044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431098097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:09 Heat of formation + Delta-G solvation = -74.461384 kcal Electronic energy + Delta-G solvation = -22465.407484 eV Core-core repulsion = 19189.937298 eV Total energy + Delta-G solvation = -3275.470187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87030 -39.34714 -38.32919 -36.06631 -34.88128 -33.94956 -32.62394 -31.11498 -28.28240 -28.06984 -27.12586 -24.57963 -23.64921 -22.93494 -21.35589 -20.91439 -19.75540 -18.33685 -17.87756 -17.60508 -16.76601 -16.63456 -16.56079 -16.15214 -15.59030 -15.35149 -14.91122 -14.76649 -14.50812 -14.14765 -13.93776 -13.86945 -13.50624 -13.29669 -13.10306 -12.93917 -12.79558 -12.71130 -12.57368 -12.46765 -12.37868 -12.02884 -11.96528 -11.77390 -11.41551 -10.93874 -10.84455 -10.46265 -10.42834 -10.09794 -9.99182 -9.79634 -8.08343 -6.23008 1.21821 1.44422 1.45832 1.52245 1.81364 2.39456 2.45458 2.81947 3.19554 3.49543 3.73680 3.94302 3.96982 4.16933 4.22554 4.28290 4.37115 4.45853 4.50678 4.55782 4.59797 4.66170 4.73652 4.75026 4.84445 4.88401 4.96514 4.99630 5.02404 5.05384 5.08809 5.21045 5.24965 5.28038 5.56031 5.62154 5.65281 5.72668 5.78924 5.85046 6.36190 6.37321 6.80989 6.86459 7.44726 7.47308 8.98557 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.004135 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.303255 B = 6770.461308 C = 7490.381004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C -0.112 4.112 4 C 0.142 3.858 5 H 0.053 0.947 6 C -0.127 4.127 7 C 0.502 3.498 8 O -0.590 6.590 9 N -0.703 5.703 10 C 0.182 3.818 11 C 0.003 3.997 12 C -0.504 4.504 13 H 0.066 0.934 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.951 3.049 17 H -0.269 1.269 18 H -0.293 1.293 19 H -0.270 1.270 20 C -0.177 4.177 21 C -0.155 4.155 22 O -0.384 6.384 23 C 0.060 3.940 24 C -0.144 4.144 25 H 0.094 0.906 26 H 0.121 0.879 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.410 0.590 33 H 0.023 0.977 34 H 0.032 0.968 35 H 0.258 0.742 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 15.793 9.771 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C -0.169 4.169 4 C 0.083 3.917 5 H 0.071 0.929 6 C -0.166 4.166 7 C 0.290 3.710 8 O -0.471 6.471 9 N -0.352 5.352 10 C 0.057 3.943 11 C 0.002 3.998 12 C -0.542 4.542 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.777 3.223 17 H -0.194 1.194 18 H -0.219 1.219 19 H -0.195 1.195 20 C -0.214 4.214 21 C -0.193 4.193 22 O -0.304 6.304 23 C -0.016 4.016 24 C -0.201 4.201 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.246 0.754 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.074 15.106 10.414 19.327 hybrid contribution -0.578 -0.799 -1.191 1.547 sum -6.652 14.306 9.222 18.275 Atomic orbital electron populations 1.23946 0.94769 1.02928 0.99903 1.22225 0.95762 0.96050 1.01399 1.20765 1.00195 0.93099 1.02813 1.20751 0.90509 0.94364 0.86038 0.92908 1.21823 1.01933 0.93888 0.99002 1.21209 0.78557 0.89909 0.81308 1.90623 1.63156 1.54687 1.38613 1.45884 1.50381 1.17603 1.21368 1.20493 0.94502 0.83533 0.95753 1.19091 0.86152 1.01195 0.93320 1.20638 1.34708 0.94467 1.04356 0.91634 1.25723 0.96717 0.95313 0.99943 1.70117 1.46928 0.98013 1.39618 0.85728 0.79537 0.76816 0.80230 1.19389 1.21872 1.19515 1.22989 1.02219 0.94872 1.01298 1.22379 1.04911 0.92293 0.99737 1.87857 1.39398 1.83226 1.19920 1.22479 0.97134 0.96642 0.85350 1.21708 0.98553 1.02845 0.96983 0.88715 0.86065 0.90305 0.90833 0.92155 0.86248 0.85585 0.75376 0.95809 0.94955 0.93259 0.89550 0.89615 0.91540 0.91657 0.92470 0.95108 0.91299 0.89326 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 13.91 67.77 0.94 -2.12 16 2 C -0.15 -3.06 5.05 -16.49 -0.08 -3.14 16 3 C -0.11 -1.83 9.73 71.24 0.69 -1.13 16 4 C 0.14 3.73 1.87 29.85 0.06 3.79 16 5 H 0.05 1.56 7.25 -2.39 -0.02 1.55 16 6 C -0.13 -3.32 5.25 29.85 0.16 -3.16 16 7 C 0.50 18.60 7.71 87.66 0.68 19.27 16 8 O -0.59 -26.58 15.42 10.77 0.17 -26.42 16 9 N -0.70 -27.00 5.48 -463.07 -2.54 -29.54 16 10 C 0.18 8.46 5.50 86.38 0.48 8.94 16 11 C 0.00 0.15 1.47 -52.93 -0.08 0.07 16 12 C -0.50 -25.61 8.59 25.60 0.22 -25.39 16 13 H 0.07 3.18 7.82 -2.91 -0.02 3.16 16 14 C 0.02 1.25 5.43 84.65 0.46 1.71 16 15 N -0.91 -51.57 12.65 21.45 0.27 -51.30 16 16 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 C -0.18 -7.16 9.96 30.62 0.30 -6.86 16 21 C -0.15 -7.23 9.14 30.62 0.28 -6.95 16 22 O -0.38 -11.36 8.76 -135.19 -1.18 -12.54 16 23 C 0.06 1.56 6.46 71.98 0.46 2.03 16 24 C -0.14 -3.14 10.28 71.98 0.74 -2.40 16 25 H 0.09 1.66 7.84 -2.91 -0.02 1.64 16 26 H 0.12 1.57 8.04 -2.91 -0.02 1.54 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 0.98 8.06 -2.39 -0.02 0.96 16 29 H 0.06 1.13 7.72 -2.39 -0.02 1.11 16 30 H 0.12 2.65 8.04 -2.38 -0.02 2.63 16 31 H 0.13 2.71 8.14 -2.38 -0.02 2.69 16 32 H 0.41 13.92 8.33 -92.71 -0.77 13.15 16 33 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.03 1.52 8.09 -2.38 -0.02 1.50 16 35 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 36 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.06 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -64.88 370.66 4.23 -60.65 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.18 Total: 30.57 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.31 Total: -15.34 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.27 Total: -80.84 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.02 Total: -38.96 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -64.88 4.23 -60.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431098097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.812 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds