Wall clock time and date at job start Tue Mar 31 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00514 * 2 1 4 4 C 1.50702 * 119.99513 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.47386 * 4.99965 * 4 2 1 6 6 C 1.53002 * 109.47169 * 245.00140 * 4 2 1 7 7 C 1.50694 * 109.47384 * 175.00021 * 6 4 2 8 8 O 1.21286 * 119.99960 * 354.76644 * 7 6 4 9 9 N 1.34778 * 120.00506 * 174.76779 * 7 6 4 10 10 C 1.46499 * 120.00366 * 174.81388 * 9 7 6 11 11 C 1.52999 * 109.47193 * 185.13178 * 10 9 7 12 12 C 1.50697 * 115.55298 * 64.90806 * 11 10 9 13 13 H 1.08004 * 119.99882 * 266.88063 * 12 11 10 14 14 C 1.37876 * 120.00073 * 86.87490 * 12 11 10 15 15 N 1.31517 * 119.99831 * 180.55926 * 14 12 11 16 16 Si 1.86794 * 119.99788 * 0.55663 * 14 12 11 17 17 H 1.48501 * 109.47288 * 84.67837 * 16 14 12 18 18 H 1.48505 * 109.46931 * 204.67449 * 16 14 12 19 19 H 1.48497 * 109.47480 * 324.67685 * 16 14 12 20 20 C 1.53001 * 117.49639 * 279.23877 * 11 10 9 21 21 C 1.53002 * 117.49779 * 210.58177 * 11 10 9 22 22 O 1.42894 * 109.47079 * 125.00297 * 4 2 1 23 23 C 1.42904 * 113.99717 * 269.99943 * 22 4 2 24 24 C 1.53007 * 109.46852 * 180.02562 * 23 22 4 25 25 H 1.07997 * 120.00685 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99251 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.47274 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46542 * 299.99612 * 3 2 1 29 29 H 1.08993 * 109.47390 * 59.99386 * 3 2 1 30 30 H 1.09008 * 109.46845 * 54.99965 * 6 4 2 31 31 H 1.08999 * 109.47004 * 295.00228 * 6 4 2 32 32 H 0.97004 * 119.99428 * 355.08695 * 9 7 6 33 33 H 1.09003 * 109.47030 * 305.12784 * 10 9 7 34 34 H 1.08994 * 109.46960 * 65.12511 * 10 9 7 35 35 H 0.97003 * 119.99587 * 179.97438 * 15 14 12 36 36 H 1.09006 * 117.49884 * 0.02562 * 20 11 10 37 37 H 1.08995 * 117.50071 * 145.01911 * 20 11 10 38 38 H 1.08996 * 117.49698 * 214.97689 * 21 11 10 39 39 H 1.08996 * 117.49471 * 359.97237 * 21 11 10 40 40 H 1.09000 * 109.47044 * 299.99892 * 23 22 4 41 41 H 1.08991 * 109.47160 * 60.00239 * 23 22 4 42 42 H 1.09000 * 109.47106 * 299.99729 * 24 23 22 43 43 H 1.09000 * 109.46949 * 59.99967 * 24 23 22 44 44 H 1.08994 * 109.46807 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3584 -2.1318 -0.0886 6 6 2.8464 -1.4416 1.3080 7 6 3.5007 -2.7979 1.3626 8 8 3.2790 -3.6136 0.4928 9 7 4.3322 -3.1048 2.3780 10 6 4.8788 -4.4590 2.4936 11 6 5.6820 -4.5759 3.7905 12 6 4.8865 -4.4348 5.0627 13 1 4.7929 -3.4688 5.5366 14 6 4.2782 -5.5387 5.6214 15 7 3.5749 -5.4135 6.7256 16 14 4.4530 -7.2121 4.8100 17 1 5.7168 -7.8502 5.2584 18 1 3.3027 -8.0701 5.1921 19 1 4.4786 -7.0466 3.3345 20 6 7.1118 -4.0315 3.7874 21 6 6.8678 -5.5426 3.8024 22 8 2.9708 -1.3318 -1.1029 23 6 2.4137 -1.8777 -2.3004 24 6 3.4682 -1.8572 -3.4089 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 3.1352 1.1058 -0.0005 28 1 1.8004 1.8765 -0.8901 29 1 1.8003 1.8767 0.8899 30 1 2.1655 -1.3323 2.1523 31 1 3.6116 -0.6668 1.3557 32 1 4.5655 -2.4298 3.0345 33 1 4.0619 -5.1807 2.5058 34 1 5.5299 -4.6617 1.6433 35 1 3.1466 -6.1902 7.1185 36 1 7.4802 -3.5897 2.8614 37 1 7.4773 -3.5717 4.7055 38 1 7.0728 -6.0762 4.7304 39 1 7.0754 -6.0956 2.8863 40 1 2.0979 -2.9050 -2.1188 41 1 1.5537 -1.2817 -2.6055 42 1 3.7845 -0.8300 -3.5906 43 1 4.3280 -2.4535 -3.1035 44 1 3.0435 -2.2739 -4.3221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431098100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:12 Heat of formation + Delta-G solvation = -53.112102 kcal Electronic energy + Delta-G solvation = -22545.033089 eV Core-core repulsion = 19270.488677 eV Total energy + Delta-G solvation = -3274.544412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57192 -38.18173 -36.93270 -35.18622 -33.34992 -32.13598 -31.64376 -30.04581 -27.48890 -26.72181 -25.30988 -23.40946 -22.70187 -21.73517 -19.76315 -19.11873 -18.85333 -16.85138 -16.79263 -16.27097 -15.55278 -15.29704 -15.13342 -14.60204 -14.40104 -14.00396 -13.81360 -13.58422 -13.27571 -12.97055 -12.75843 -12.65175 -12.37153 -12.28620 -12.09803 -11.78603 -11.59018 -11.54709 -11.17175 -11.04861 -10.78244 -10.73951 -10.48255 -10.19056 -9.72579 -9.47844 -9.40920 -9.20470 -9.17342 -8.65390 -8.56296 -8.24451 -6.16648 -4.21030 2.01297 3.20238 3.28367 3.37997 3.43071 3.69358 3.86935 4.39227 4.66147 4.83716 4.91391 5.04123 5.11866 5.12858 5.23624 5.31651 5.43370 5.47629 5.51160 5.58020 5.63591 5.70818 5.75954 5.82646 5.88791 5.93438 5.99633 6.02000 6.07132 6.12289 6.26819 6.42267 6.43003 6.53698 6.63689 6.70440 7.00364 7.07753 7.18817 7.34705 7.67452 8.22141 8.40460 8.83225 8.84054 9.46665 10.94739 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.004197 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.954028 B = 6669.624879 C = 7086.339629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.143 4.143 3 C -0.114 4.114 4 C 0.143 3.857 5 H 0.074 0.926 6 C -0.137 4.137 7 C 0.512 3.488 8 O -0.553 6.553 9 N -0.704 5.704 10 C 0.157 3.843 11 C -0.017 4.017 12 C -0.489 4.489 13 H 0.078 0.922 14 C 0.080 3.920 15 N -0.896 5.896 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.295 1.295 19 H -0.260 1.260 20 C -0.178 4.178 21 C -0.195 4.195 22 O -0.367 6.367 23 C 0.063 3.937 24 C -0.148 4.148 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.403 0.597 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 10.553 -14.326 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.144 4.144 3 C -0.171 4.171 4 C 0.085 3.915 5 H 0.092 0.908 6 C -0.177 4.177 7 C 0.298 3.702 8 O -0.432 6.432 9 N -0.354 5.354 10 C 0.034 3.966 11 C -0.018 4.018 12 C -0.526 4.526 13 H 0.096 0.904 14 C -0.123 4.123 15 N -0.533 5.533 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.222 1.222 19 H -0.184 1.184 20 C -0.215 4.215 21 C -0.233 4.233 22 O -0.286 6.286 23 C -0.014 4.014 24 C -0.205 4.205 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.237 0.763 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.602 9.912 -14.775 17.981 hybrid contribution -0.165 -0.792 0.121 0.818 sum -2.767 9.120 -14.654 17.480 Atomic orbital electron populations 1.23744 0.95170 1.02050 1.01618 1.22334 0.95490 0.96763 0.99784 1.20737 1.00832 0.93978 1.01512 1.20753 0.90950 0.93466 0.86379 0.90838 1.21774 1.01340 0.96635 0.97937 1.20339 0.79315 0.88978 0.81598 1.90633 1.63052 1.51172 1.38350 1.45823 1.47434 1.14159 1.27943 1.21106 0.96987 0.82714 0.95825 1.19646 0.86885 1.00331 0.94925 1.20179 1.30962 0.96737 1.04730 0.90384 1.24959 0.94006 0.99053 0.94283 1.69885 1.32924 1.30816 1.19641 0.86868 0.77259 0.84008 0.81081 1.20191 1.22161 1.18412 1.22836 1.01984 0.95709 1.00993 1.22967 1.06255 0.92661 1.01397 1.87887 1.38363 1.83193 1.19199 1.22394 0.95996 0.97631 0.85357 1.21706 0.99604 1.02441 0.96783 0.88380 0.88183 0.91344 0.91904 0.91660 0.87493 0.88390 0.76310 0.91782 0.94050 0.92479 0.90860 0.89406 0.89105 0.90773 0.92943 0.94156 0.92285 0.91779 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 13.95 29.01 0.40 -1.47 16 2 C -0.14 -1.59 5.05 -101.07 -0.51 -2.09 16 3 C -0.11 -1.09 9.69 36.01 0.35 -0.74 16 4 C 0.14 1.93 1.79 -27.88 -0.05 1.88 16 5 H 0.07 1.07 7.17 -51.93 -0.37 0.70 16 6 C -0.14 -1.88 5.24 -27.88 -0.15 -2.03 16 7 C 0.51 9.30 7.67 -10.99 -0.08 9.21 16 8 O -0.55 -11.78 15.51 -5.93 -0.09 -11.88 16 9 N -0.70 -13.20 5.45 -60.30 -0.33 -13.53 16 10 C 0.16 3.36 5.21 -4.04 -0.02 3.34 16 11 C -0.02 -0.37 0.85 -155.66 -0.13 -0.50 16 12 C -0.49 -12.81 9.30 -34.44 -0.32 -13.13 16 13 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 15 N -0.90 -26.44 13.96 55.43 0.77 -25.66 16 16 Si 0.88 21.53 24.78 -169.99 -4.21 17.32 16 17 H -0.28 -6.57 7.00 56.52 0.40 -6.17 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.26 -6.18 5.96 56.52 0.34 -5.85 16 20 C -0.18 -3.42 9.96 -26.69 -0.27 -3.69 16 21 C -0.19 -4.03 7.60 -26.69 -0.20 -4.23 16 22 O -0.37 -5.36 9.13 -46.72 -0.43 -5.79 16 23 C 0.06 0.80 6.46 37.16 0.24 1.04 16 24 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 25 H 0.10 0.95 7.84 -52.49 -0.41 0.54 16 26 H 0.10 0.84 8.05 -52.48 -0.42 0.41 16 27 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.11 1.33 8.14 -51.92 -0.42 0.90 16 31 H 0.10 1.18 7.66 -51.93 -0.40 0.79 16 32 H 0.40 6.90 8.45 -40.82 -0.34 6.55 16 33 H 0.06 1.52 6.74 -51.93 -0.35 1.17 16 34 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.09 1.97 7.09 -51.93 -0.37 1.60 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -30.88 361.88 -7.04 -37.92 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.75 Total: 7.69 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.45 Total: -11.52 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.44 Total: -39.19 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.52 Total: -17.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.21 Total: 17.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.88 -7.04 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431098100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.195 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds