Wall clock time and date at job start Tue Mar 31 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99956 * 2 1 4 4 C 1.50700 * 109.47348 * 302.69859 * 3 2 1 5 5 O 1.21282 * 120.00081 * 140.64782 * 4 3 2 6 6 N 1.34775 * 119.99875 * 320.65666 * 4 3 2 7 7 C 1.46498 * 120.00135 * 174.63443 * 6 4 3 8 8 C 1.53004 * 109.46964 * 88.18595 * 7 6 4 9 9 C 1.50699 * 115.54603 * 202.81763 * 8 7 6 10 10 H 1.08003 * 120.00014 * 219.90286 * 9 8 7 11 11 C 1.37876 * 120.00541 * 39.90635 * 9 8 7 12 12 N 1.31515 * 119.99591 * 12.37282 * 11 9 8 13 13 Si 1.86797 * 120.00098 * 192.38130 * 11 9 8 14 14 H 1.48500 * 109.47715 * 94.98977 * 13 11 9 15 15 H 1.48503 * 109.46970 * 214.98981 * 13 11 9 16 16 H 1.48500 * 109.47162 * 334.98713 * 13 11 9 17 17 C 1.52994 * 117.49747 * 57.14764 * 8 7 6 18 18 C 1.53000 * 60.03194 * 252.49617 * 17 8 7 19 19 C 1.52997 * 109.47405 * 62.70235 * 3 2 1 20 20 C 1.53002 * 109.47385 * 179.97438 * 19 3 2 21 21 C 1.52998 * 109.46956 * 300.00183 * 20 19 3 22 22 C 1.52997 * 109.47223 * 59.99718 * 21 20 19 23 23 C 1.52995 * 109.47436 * 299.99743 * 22 21 20 24 24 H 1.08995 * 109.47726 * 184.52548 * 1 2 3 25 25 H 1.09008 * 109.47527 * 304.52324 * 1 2 3 26 26 H 1.09002 * 109.47453 * 64.52292 * 1 2 3 27 27 H 0.97003 * 119.99998 * 354.63325 * 6 4 3 28 28 H 1.09007 * 109.47042 * 328.18619 * 7 6 4 29 29 H 1.09003 * 109.47191 * 208.18516 * 7 6 4 30 30 H 0.97000 * 119.99751 * 184.99719 * 12 11 9 31 31 H 1.08994 * 117.50324 * 359.97438 * 17 8 7 32 32 H 1.09006 * 117.49879 * 144.99985 * 17 8 7 33 33 H 1.09007 * 117.49826 * 107.50081 * 18 17 8 34 34 H 1.08999 * 117.50290 * 252.52045 * 18 17 8 35 35 H 1.09006 * 109.47124 * 300.00028 * 19 3 2 36 36 H 1.09003 * 109.47063 * 59.99540 * 19 3 2 37 37 H 1.08990 * 109.47059 * 179.97438 * 20 19 3 38 38 H 1.08997 * 109.46507 * 59.99947 * 20 19 3 39 39 H 1.08995 * 109.46886 * 299.99543 * 21 20 19 40 40 H 1.09003 * 109.47051 * 179.97438 * 21 20 19 41 41 H 1.09006 * 109.47124 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.47332 * 60.00098 * 22 21 20 43 43 H 1.09003 * 109.47385 * 300.00282 * 23 22 21 44 44 H 1.08994 * 109.47835 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5133 2.0766 -1.1956 5 8 1.2465 3.2549 -1.0891 6 7 1.3654 1.4568 -2.3832 7 6 0.7724 2.1737 -3.5148 8 6 1.8705 2.9131 -4.2820 9 6 1.4094 4.0871 -5.1067 10 1 1.8359 4.2618 -6.0834 11 6 0.4430 4.9384 -4.6143 12 7 0.0986 4.8791 -3.3464 13 14 -0.3772 6.1758 -5.7481 14 1 -1.6468 5.6064 -6.2669 15 1 -0.6653 7.4225 -4.9945 16 1 0.5285 6.4823 -6.8843 17 6 3.0349 2.0823 -4.8248 18 6 3.2502 3.0082 -3.6259 19 6 1.6133 2.0405 1.2818 20 6 2.2361 3.4380 1.2821 21 6 3.7598 3.3172 1.2144 22 6 4.1567 2.5822 -0.0675 23 6 3.5340 1.1847 -0.0677 24 1 -0.3634 -1.0244 0.0811 25 1 -0.3634 0.5824 0.8467 26 1 -0.3634 0.4420 -0.9277 27 1 1.6516 0.5360 -2.4887 28 1 0.0399 2.8920 -3.1463 29 1 0.2814 1.4622 -4.1788 30 1 -0.6308 5.4265 -3.0159 31 1 3.0191 1.0092 -4.6350 32 1 3.4676 2.3850 -5.7784 33 1 3.3756 2.5440 -2.6476 34 1 3.8241 3.9201 -3.7908 35 1 0.5277 2.1261 1.3303 36 1 1.9727 1.4827 2.1466 37 1 1.9530 3.9617 2.1950 38 1 1.8770 3.9959 0.4173 39 1 4.1189 2.7593 2.0791 40 1 4.2036 4.3129 1.2141 41 1 5.2423 2.4966 -0.1159 42 1 3.7977 3.1401 -0.9322 43 1 3.8930 0.6267 0.7971 44 1 3.8170 0.6609 -0.9806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431175494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:18 Heat of formation + Delta-G solvation = -52.159175 kcal Electronic energy + Delta-G solvation = -24675.403757 eV Core-core repulsion = 21400.900667 eV Total energy + Delta-G solvation = -3274.503090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53945 -37.57469 -36.43055 -35.78675 -32.87022 -32.04290 -30.62023 -29.82886 -26.52443 -26.28949 -25.16264 -22.65029 -22.27330 -21.17230 -20.43931 -19.21930 -18.61971 -17.16155 -16.20175 -16.11114 -15.25929 -14.89935 -14.74130 -14.42726 -14.05439 -13.92881 -13.58584 -13.30560 -13.05623 -12.84319 -12.49811 -12.02821 -11.77627 -11.73331 -11.52810 -11.34281 -11.29773 -10.92213 -10.74940 -10.64533 -10.56560 -10.28981 -10.24964 -10.06926 -10.02183 -9.50696 -9.48969 -9.13360 -8.64958 -8.25560 -8.00185 -7.76318 -5.89110 -3.98650 3.31358 3.38725 3.40645 3.43028 3.76962 4.09023 4.45401 4.88266 4.96253 5.06871 5.26563 5.35944 5.37460 5.50512 5.54507 5.59159 5.62480 5.71629 5.73443 5.83188 5.84569 6.03040 6.05344 6.17886 6.21984 6.36972 6.38327 6.48382 6.49611 6.56249 6.59075 6.75301 6.92053 7.01534 7.07867 7.20583 7.27520 7.44926 7.57875 7.74761 8.02401 8.40806 8.56296 8.95933 9.22407 9.59753 11.06974 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.006267 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.742111 B = 4466.514852 C = 4534.631178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.377 6.377 3 C 0.099 3.901 4 C 0.484 3.516 5 O -0.475 6.475 6 N -0.721 5.721 7 C 0.130 3.870 8 C 0.050 3.950 9 C -0.497 4.497 10 H 0.058 0.942 11 C 0.069 3.931 12 N -0.841 5.841 13 Si 0.883 3.117 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.217 4.217 18 C -0.191 4.191 19 C -0.120 4.120 20 C -0.146 4.146 21 C -0.113 4.113 22 C -0.127 4.127 23 C -0.097 4.097 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.384 0.616 28 H 0.135 0.865 29 H 0.045 0.955 30 H 0.259 0.741 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.123 0.877 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -8.720 8.972 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.296 6.296 3 C 0.056 3.944 4 C 0.267 3.733 5 O -0.347 6.347 6 N -0.372 5.372 7 C 0.008 3.992 8 C 0.049 3.951 9 C -0.535 4.535 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.476 5.476 13 Si 0.710 3.290 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.255 4.255 18 C -0.229 4.229 19 C -0.158 4.158 20 C -0.183 4.183 21 C -0.150 4.150 22 C -0.164 4.164 23 C -0.135 4.135 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.216 0.784 28 H 0.152 0.848 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.433 -7.861 9.213 12.353 hybrid contribution -0.349 0.219 -0.659 0.777 sum 2.084 -7.642 8.554 11.658 Atomic orbital electron populations 1.22862 0.81122 1.02371 1.01212 1.87893 1.19882 1.26790 1.95059 1.21956 0.95124 0.82987 0.94322 1.20757 0.79606 0.88468 0.84498 1.90704 1.46869 1.14074 1.83100 1.46094 1.63807 1.15667 1.11593 1.21485 0.97709 0.94853 0.85183 1.19318 0.85577 0.94551 0.95676 1.20475 1.22804 1.08388 1.01784 0.92416 1.25027 0.97354 0.96621 0.94524 1.70032 1.27142 1.39187 1.11229 0.86735 0.79944 0.81183 0.81113 1.20734 1.21357 1.20011 1.22885 1.09923 0.95086 0.97586 1.22934 1.06349 0.99366 0.94272 1.21824 1.01041 0.97199 0.95695 1.22095 0.94731 0.96598 1.04869 1.21470 0.96726 0.99921 0.96900 1.21658 0.99815 0.95041 0.99907 1.21400 0.90785 0.98346 1.02927 0.89754 0.93692 0.93024 0.78440 0.84759 0.93676 0.93077 0.92000 0.91174 0.91113 0.91436 0.91704 0.91747 0.93013 0.85944 0.93056 0.92136 0.91743 0.89891 0.90903 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.29 101.05 1.04 1.31 16 2 O -0.38 -5.57 9.88 -35.23 -0.35 -5.92 16 3 C 0.10 1.55 0.78 -91.77 -0.07 1.48 16 4 C 0.48 9.25 2.77 -10.99 -0.03 9.22 16 5 O -0.47 -10.92 12.22 5.56 0.07 -10.85 16 6 N -0.72 -13.63 3.37 -60.29 -0.20 -13.83 16 7 C 0.13 2.93 5.91 -4.04 -0.02 2.91 16 8 C 0.05 1.23 2.29 -155.63 -0.36 0.87 16 9 C -0.50 -13.56 9.01 -34.44 -0.31 -13.87 16 10 H 0.06 1.59 7.85 -52.48 -0.41 1.18 16 11 C 0.07 1.88 5.19 -17.82 -0.09 1.78 16 12 N -0.84 -23.36 10.57 55.43 0.59 -22.78 16 13 Si 0.88 20.93 29.56 -169.99 -5.02 15.91 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C -0.22 -4.72 9.83 -26.73 -0.26 -4.98 16 18 C -0.19 -4.43 9.38 -26.69 -0.25 -4.68 16 19 C -0.12 -1.79 4.43 -26.73 -0.12 -1.91 16 20 C -0.15 -2.30 5.62 -26.73 -0.15 -2.45 16 21 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 22 C -0.13 -1.90 5.59 -26.73 -0.15 -2.05 16 23 C -0.10 -1.39 5.09 -26.73 -0.14 -1.53 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.57 6.27 -51.92 -0.33 0.24 16 26 H 0.05 0.76 6.72 -51.93 -0.35 0.41 16 27 H 0.38 6.38 8.49 -40.82 -0.35 6.03 16 28 H 0.14 3.48 4.70 -51.93 -0.24 3.24 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.53 3.92 -51.92 -0.20 1.33 16 34 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.06 0.99 6.50 -51.93 -0.34 0.66 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.12 2.42 4.92 -52.01 -0.26 2.17 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.54 5.14 -51.93 -0.27 1.27 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -28.78 329.54 -7.98 -36.75 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.95 Total: 11.40 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.07 Total: -15.65 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.38 Total: -36.61 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.28 Total: -16.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.78 -7.98 -36.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431175494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.408 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds