Wall clock time and date at job start Tue Mar 31 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.78150 * 2 1 4 4 C 1.51297 * 109.64349 * 239.51119 * 2 1 3 5 5 O 1.20763 * 120.84437 * 8.94430 * 4 2 1 6 6 C 1.51270 * 118.30786 * 188.94599 * 4 2 1 7 7 C 1.53231 * 108.53510 * 51.35003 * 6 4 2 8 8 C 1.52960 * 109.40279 * 305.36960 * 7 6 4 9 9 H 1.08998 * 109.41645 * 303.49325 * 8 7 6 10 10 C 1.50700 * 109.41181 * 183.70397 * 8 7 6 11 11 O 1.21278 * 120.00485 * 263.29371 * 10 8 7 12 12 N 1.34776 * 119.99531 * 83.29420 * 10 8 7 13 13 C 1.46501 * 119.99779 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47440 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99576 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99968 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99610 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47586 * 59.99855 * 19 17 15 21 21 H 1.48504 * 109.46941 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46944 * 299.99594 * 19 17 15 23 23 C 1.52964 * 109.81477 * 63.60243 * 8 7 6 24 24 C 1.52992 * 109.48185 * 56.37891 * 23 8 7 25 25 C 1.53003 * 109.47843 * 176.40733 * 23 8 7 26 26 H 1.09006 * 109.47220 * 299.52515 * 1 2 3 27 27 H 1.08998 * 109.47080 * 59.52104 * 1 2 3 28 28 H 1.09003 * 109.47804 * 179.52422 * 1 2 3 29 29 H 1.08991 * 109.62775 * 291.63408 * 6 4 2 30 30 H 1.09004 * 109.62544 * 171.06301 * 6 4 2 31 31 H 1.08996 * 109.47958 * 185.39227 * 7 6 4 32 32 H 1.08996 * 109.48652 * 65.35106 * 7 6 4 33 33 H 0.97003 * 120.00682 * 359.97438 * 12 10 8 34 34 H 1.08998 * 109.47282 * 300.00148 * 13 12 10 35 35 H 1.09007 * 109.47220 * 60.00093 * 13 12 10 36 36 H 1.08998 * 109.47203 * 300.00355 * 14 13 12 37 37 H 1.09003 * 109.46911 * 60.00471 * 14 13 12 38 38 H 0.97007 * 119.99462 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.46907 * 180.02562 * 24 23 8 40 40 H 1.09006 * 109.47326 * 60.03018 * 24 23 8 41 41 H 1.08999 * 109.47562 * 300.02695 * 24 23 8 42 42 H 1.08998 * 109.47064 * 302.14443 * 25 23 8 43 43 H 1.09000 * 109.47113 * 62.14773 * 25 23 8 44 44 H 1.08999 * 109.46878 * 182.14795 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0386 -0.7230 -1.2279 5 8 1.2821 -1.0546 -2.1089 6 6 3.5187 -1.0198 -1.3239 7 6 3.9610 -1.7148 -0.0318 8 6 3.5676 -0.8529 1.1690 9 1 4.0049 0.1397 1.0614 10 6 4.0821 -1.4910 2.4336 11 8 3.3505 -2.1913 3.1007 12 7 5.3555 -1.2833 2.8232 13 6 5.8557 -1.9031 4.0528 14 6 7.3194 -1.5105 4.2631 15 6 7.8337 -2.1476 5.5283 16 1 7.1818 -2.7706 6.1227 17 6 9.1363 -1.9350 5.9269 18 7 9.9299 -1.1759 5.2033 19 14 9.7740 -2.7254 7.4948 20 1 9.6696 -4.2024 7.3826 21 1 11.1946 -2.3441 7.6990 22 1 8.9648 -2.2582 8.6490 23 6 2.0445 -0.7321 1.2439 24 6 1.4244 -2.1292 1.3068 25 6 1.6562 0.0556 2.4968 26 1 -0.3634 0.5065 0.8943 27 1 -0.3633 0.5212 -0.8856 28 1 -0.3635 -1.0276 -0.0085 29 1 4.0717 -0.0886 -1.4465 30 1 3.7063 -1.6749 -2.1746 31 1 5.0424 -1.8499 -0.0436 32 1 3.4738 -2.6869 0.0433 33 1 5.9409 -0.7234 2.2895 34 1 5.2618 -1.5603 4.9001 35 1 5.7790 -2.9874 3.9703 36 1 7.9130 -1.8536 3.4158 37 1 7.3965 -0.4263 4.3454 38 1 10.8465 -1.0267 5.4836 39 1 0.3390 -2.0429 1.3597 40 1 1.7909 -2.6500 2.1915 41 1 1.7012 -2.6903 0.4142 42 1 2.0559 -0.4446 3.3788 43 1 2.0659 1.0637 2.4337 44 1 0.5700 0.1089 2.5702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440728708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:16 Heat of formation + Delta-G solvation = -102.772523 kcal Electronic energy + Delta-G solvation = -22948.519769 eV Core-core repulsion = 19671.821919 eV Total energy + Delta-G solvation = -3276.697850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26441 -39.26944 -37.10165 -34.90911 -33.93346 -32.83079 -31.02605 -29.84055 -27.65041 -27.38260 -25.67073 -24.73373 -22.47236 -21.12264 -20.70900 -19.84492 -18.30581 -16.95749 -16.37036 -16.09954 -15.91261 -15.45986 -15.23618 -14.80329 -14.56774 -14.47180 -13.75225 -13.64598 -13.35126 -13.10181 -12.77642 -12.65792 -12.42772 -12.31712 -12.03048 -11.87546 -11.64933 -11.47307 -11.42210 -11.22995 -11.03059 -10.84353 -10.71986 -10.68211 -10.51784 -10.34433 -9.72630 -9.50016 -9.41995 -9.00710 -8.57877 -8.39232 -6.12838 -4.15913 1.77184 2.90745 3.28666 3.32771 3.35296 3.56786 3.83708 4.30588 4.38219 4.44244 4.59211 4.69910 4.88752 4.96736 5.04096 5.13254 5.21695 5.24296 5.29413 5.37311 5.44032 5.57014 5.63429 5.74406 5.77377 5.80763 5.82357 5.90530 5.98518 6.04431 6.18395 6.29845 6.30587 6.34726 6.53970 6.70669 6.95684 7.31354 7.47211 7.57075 7.85010 7.96397 8.23904 8.62256 8.89896 9.49205 10.98627 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.003304 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.875578 B = 8471.751019 C = 8833.671963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 H 0.103 0.897 4 C 0.366 3.634 5 O -0.457 6.457 6 C -0.168 4.168 7 C -0.107 4.107 8 C -0.106 4.106 9 H 0.094 0.906 10 C 0.514 3.486 11 O -0.540 6.540 12 N -0.720 5.720 13 C 0.121 3.879 14 C 0.013 3.987 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.028 4.028 24 C -0.168 4.168 25 C -0.149 4.149 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.397 0.603 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.053 0.947 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.167 4.300 -11.986 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 H 0.121 0.879 4 C 0.242 3.758 5 O -0.330 6.330 6 C -0.206 4.206 7 C -0.145 4.145 8 C -0.127 4.127 9 H 0.113 0.887 10 C 0.300 3.700 11 O -0.419 6.419 12 N -0.370 5.370 13 C -0.001 4.001 14 C -0.024 4.024 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.028 4.028 24 C -0.225 4.225 25 C -0.206 4.206 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.890 3.679 -11.955 19.446 hybrid contribution 0.970 0.050 0.576 1.129 sum -13.919 3.728 -11.379 18.361 Atomic orbital electron populations 1.21742 0.93091 1.02992 1.01960 1.21973 0.98101 1.00728 0.94321 0.87902 1.24902 0.90795 0.74447 0.85672 1.90380 1.60157 1.42677 1.39769 1.22321 0.95074 1.03294 0.99886 1.21528 1.02542 0.99299 0.91139 1.21446 0.96724 1.00667 0.93887 0.88736 1.20310 0.82157 0.81228 0.86306 1.90535 1.55928 1.39399 1.56004 1.46407 1.11923 1.51254 1.27370 1.21722 0.97789 0.96859 0.83725 1.19313 0.88072 0.97391 0.97671 1.21013 0.96755 1.30627 1.07790 0.92326 1.24990 0.96853 0.95134 0.97247 1.69944 1.06889 1.37864 1.38595 0.86577 0.77765 0.79826 0.83407 1.20102 1.21229 1.20092 1.20226 0.92234 0.96702 0.93683 1.22448 1.00240 0.95393 1.04398 1.22017 1.01653 0.99270 0.97655 0.91687 0.92342 0.91730 0.88085 0.89003 0.89855 0.90169 0.76950 0.92556 0.92580 0.95987 0.95983 0.92768 0.92811 0.87685 0.93607 0.90559 0.92924 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 7.84 37.15 0.29 -1.00 16 2 C -0.13 -1.21 2.26 -91.36 -0.21 -1.42 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.37 3.80 5.61 -28.46 -0.16 3.64 16 5 O -0.46 -6.14 16.88 6.00 0.10 -6.04 16 6 C -0.17 -1.39 6.17 -27.48 -0.17 -1.56 16 7 C -0.11 -1.02 4.93 -26.63 -0.13 -1.15 16 8 C -0.11 -1.12 1.77 -91.81 -0.16 -1.28 16 9 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 10 C 0.51 7.54 6.08 -10.99 -0.07 7.47 16 11 O -0.54 -9.56 11.99 5.56 0.07 -9.49 16 12 N -0.72 -11.31 5.56 -60.29 -0.33 -11.64 16 13 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 C -0.03 -0.29 0.29 -154.41 -0.04 -0.34 16 24 C -0.17 -2.01 7.09 37.15 0.26 -1.75 16 25 C -0.15 -1.60 7.89 37.16 0.29 -1.31 16 26 H 0.06 0.52 6.66 -51.93 -0.35 0.18 16 27 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.06 0.65 6.36 -51.93 -0.33 0.32 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.86 6.20 -51.93 -0.32 0.54 16 33 H 0.40 5.35 8.47 -40.82 -0.35 5.00 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.05 0.59 6.36 -51.93 -0.33 0.26 16 40 H 0.10 1.52 5.15 -51.93 -0.27 1.26 16 41 H 0.04 0.54 5.60 -51.93 -0.29 0.25 16 42 H 0.08 1.03 6.04 -51.93 -0.31 0.71 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.57 6.71 -51.93 -0.35 0.23 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -30.88 336.87 -7.13 -38.01 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.08 Total: 2.04 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.67 Total: -9.05 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.40 Total: -36.54 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.17 Total: -15.53 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.88 -7.13 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440728708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.766 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds