Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.78150 * 2 1 4 4 C 1.51297 * 109.64349 * 239.51119 * 2 1 3 5 5 O 1.20763 * 120.84437 * 8.94430 * 4 2 1 6 6 C 1.51270 * 118.30786 * 188.94599 * 4 2 1 7 7 C 1.53231 * 108.53510 * 51.35003 * 6 4 2 8 8 C 1.52960 * 109.40279 * 305.36960 * 7 6 4 9 9 H 1.08998 * 109.41645 * 303.49325 * 8 7 6 10 10 C 1.50700 * 109.41181 * 183.70397 * 8 7 6 11 11 O 1.21278 * 120.00485 * 263.29371 * 10 8 7 12 12 N 1.34776 * 119.99531 * 83.29420 * 10 8 7 13 13 C 1.46501 * 119.99779 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47440 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99576 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99968 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99610 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47586 * 59.99855 * 19 17 15 21 21 H 1.48504 * 109.46941 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46944 * 299.99594 * 19 17 15 23 23 C 1.52964 * 109.81477 * 63.60243 * 8 7 6 24 24 C 1.52992 * 109.48185 * 56.37891 * 23 8 7 25 25 C 1.53003 * 109.47843 * 176.40733 * 23 8 7 26 26 H 1.09006 * 109.47220 * 299.52515 * 1 2 3 27 27 H 1.08998 * 109.47080 * 59.52104 * 1 2 3 28 28 H 1.09003 * 109.47804 * 179.52422 * 1 2 3 29 29 H 1.08991 * 109.62775 * 291.63408 * 6 4 2 30 30 H 1.09004 * 109.62544 * 171.06301 * 6 4 2 31 31 H 1.08996 * 109.47958 * 185.39227 * 7 6 4 32 32 H 1.08996 * 109.48652 * 65.35106 * 7 6 4 33 33 H 0.97003 * 120.00682 * 359.97438 * 12 10 8 34 34 H 1.08998 * 109.47282 * 300.00148 * 13 12 10 35 35 H 1.09007 * 109.47220 * 60.00093 * 13 12 10 36 36 H 1.08998 * 109.47203 * 300.00355 * 14 13 12 37 37 H 1.09003 * 109.46911 * 60.00471 * 14 13 12 38 38 H 0.97007 * 119.99462 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.46907 * 180.02562 * 24 23 8 40 40 H 1.09006 * 109.47326 * 60.03018 * 24 23 8 41 41 H 1.08999 * 109.47562 * 300.02695 * 24 23 8 42 42 H 1.08998 * 109.47064 * 302.14443 * 25 23 8 43 43 H 1.09000 * 109.47113 * 62.14773 * 25 23 8 44 44 H 1.08999 * 109.46878 * 182.14795 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8988 1.0257 0.0000 4 6 2.0386 -0.7230 -1.2279 5 8 1.2821 -1.0546 -2.1089 6 6 3.5187 -1.0198 -1.3239 7 6 3.9610 -1.7148 -0.0318 8 6 3.5676 -0.8529 1.1690 9 1 4.0049 0.1397 1.0614 10 6 4.0821 -1.4910 2.4336 11 8 3.3505 -2.1913 3.1007 12 7 5.3555 -1.2833 2.8232 13 6 5.8557 -1.9031 4.0528 14 6 7.3194 -1.5105 4.2631 15 6 7.8337 -2.1476 5.5283 16 1 7.1818 -2.7706 6.1227 17 6 9.1363 -1.9350 5.9269 18 7 9.9299 -1.1759 5.2033 19 14 9.7740 -2.7254 7.4948 20 1 9.6696 -4.2024 7.3826 21 1 11.1946 -2.3441 7.6990 22 1 8.9648 -2.2582 8.6490 23 6 2.0445 -0.7321 1.2439 24 6 1.4244 -2.1292 1.3068 25 6 1.6562 0.0556 2.4968 26 1 -0.3634 0.5065 0.8943 27 1 -0.3633 0.5212 -0.8856 28 1 -0.3635 -1.0276 -0.0085 29 1 4.0717 -0.0886 -1.4465 30 1 3.7063 -1.6749 -2.1746 31 1 5.0424 -1.8499 -0.0436 32 1 3.4738 -2.6869 0.0433 33 1 5.9409 -0.7234 2.2895 34 1 5.2618 -1.5603 4.9001 35 1 5.7790 -2.9874 3.9703 36 1 7.9130 -1.8536 3.4158 37 1 7.3965 -0.4263 4.3454 38 1 10.8465 -1.0267 5.4836 39 1 0.3390 -2.0429 1.3597 40 1 1.7909 -2.6500 2.1915 41 1 1.7012 -2.6903 0.4142 42 1 2.0559 -0.4446 3.3788 43 1 2.0659 1.0637 2.4337 44 1 0.5700 0.1089 2.5702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440728708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = -121.964304 kcal Electronic energy + Delta-G solvation = -22949.351987 eV Core-core repulsion = 19671.821919 eV Total energy + Delta-G solvation = -3277.530068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.18805 -40.35371 -38.13104 -36.46107 -34.97657 -34.48712 -31.96889 -31.44059 -28.71619 -28.29186 -26.52922 -26.43169 -23.59683 -22.66304 -21.70939 -20.96298 -19.14125 -18.55967 -17.86939 -17.04715 -16.82950 -16.56793 -16.36769 -16.27550 -16.00702 -15.60677 -14.94962 -14.80772 -14.34857 -14.26999 -14.19330 -13.61445 -13.49495 -13.24979 -13.15220 -12.97779 -12.85106 -12.70939 -12.54490 -12.47581 -12.38615 -12.26128 -12.10738 -11.69606 -11.60506 -11.53681 -11.42251 -11.34147 -10.58185 -10.31381 -10.25732 -9.90927 -8.22841 -6.32800 0.98162 1.42736 1.44242 1.52241 1.73652 2.29678 2.47807 3.08761 3.12087 3.46994 3.63832 3.70672 3.86603 4.14211 4.18226 4.22351 4.36656 4.38506 4.44718 4.54024 4.56258 4.61145 4.70816 4.83200 4.87674 4.90418 4.95668 4.98452 5.02995 5.06417 5.10649 5.15416 5.22703 5.27514 5.39789 5.48193 5.50911 5.62523 5.71427 5.83985 6.19195 6.53944 6.73456 6.80837 7.36515 7.42159 8.88492 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.003304 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.875578 B = 8471.751019 C = 8833.671963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 H 0.133 0.867 4 C 0.366 3.634 5 O -0.493 6.493 6 C -0.161 4.161 7 C -0.104 4.104 8 C -0.098 4.098 9 H 0.128 0.872 10 C 0.514 3.486 11 O -0.571 6.571 12 N -0.717 5.717 13 C 0.142 3.858 14 C 0.023 3.977 15 C -0.548 4.548 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.961 3.039 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.024 4.024 24 C -0.165 4.165 25 C -0.147 4.147 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 5.486 -12.549 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 H 0.151 0.849 4 C 0.244 3.756 5 O -0.368 6.368 6 C -0.198 4.198 7 C -0.142 4.142 8 C -0.119 4.119 9 H 0.146 0.854 10 C 0.302 3.698 11 O -0.452 6.452 12 N -0.368 5.368 13 C 0.018 3.982 14 C -0.014 4.014 15 C -0.586 4.586 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.025 4.025 24 C -0.222 4.222 25 C -0.204 4.204 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.151 0.849 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.836 4.875 -12.531 20.023 hybrid contribution 0.904 -0.344 0.752 1.225 sum -13.932 4.532 -11.780 18.799 Atomic orbital electron populations 1.21740 0.93240 1.02220 1.02613 1.21982 0.98014 1.01861 0.92703 0.84916 1.25311 0.91563 0.73376 0.85325 1.90382 1.61136 1.44158 1.41143 1.22321 0.93794 1.04726 0.98957 1.21500 1.03069 0.98399 0.91240 1.21495 0.96718 1.02046 0.91605 0.85363 1.21054 0.81122 0.80481 0.87169 1.90551 1.56599 1.40690 1.57327 1.46216 1.12805 1.51512 1.26238 1.21154 0.95385 0.96190 0.85445 1.19120 0.90083 0.96146 0.96075 1.21462 0.97256 1.30870 1.09051 0.92490 1.25824 0.97123 0.95610 1.00445 1.70042 1.07240 1.38970 1.40221 0.85561 0.77284 0.79045 0.79550 1.19469 1.20637 1.19390 1.20179 0.92055 0.95763 0.94454 1.22369 1.00606 0.96399 1.02805 1.21981 1.02270 0.99860 0.96257 0.90409 0.92290 0.93265 0.84872 0.88742 0.88768 0.91965 0.75400 0.93730 0.93887 0.97298 0.97246 0.92569 0.92378 0.90426 0.93940 0.93668 0.90945 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.84 71.98 0.56 -1.76 16 2 C -0.13 -1.96 2.26 -11.27 -0.03 -1.99 16 3 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.37 6.74 5.61 29.47 0.17 6.91 16 5 O -0.49 -12.62 16.88 -1.46 -0.02 -12.64 16 6 C -0.16 -2.16 6.17 30.11 0.19 -1.98 16 7 C -0.10 -1.74 4.93 30.66 0.15 -1.59 16 8 C -0.10 -1.83 1.77 -11.57 -0.02 -1.85 16 9 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 10 C 0.51 14.64 6.08 87.66 0.53 15.17 16 11 O -0.57 -20.51 11.99 -3.02 -0.04 -20.54 16 12 N -0.72 -21.96 5.56 -463.05 -2.57 -24.53 16 13 C 0.14 5.75 5.61 86.38 0.48 6.24 16 14 C 0.02 1.12 5.09 29.85 0.15 1.27 16 15 C -0.55 -29.92 9.11 25.60 0.23 -29.69 16 16 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 17 C 0.01 0.49 5.46 84.65 0.46 0.95 16 18 N -0.93 -53.12 13.29 21.45 0.28 -52.84 16 19 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 C -0.02 -0.45 0.29 -52.12 -0.02 -0.47 16 24 C -0.17 -3.92 7.09 71.98 0.51 -3.41 16 25 C -0.15 -2.88 7.89 71.98 0.57 -2.31 16 26 H 0.08 1.06 6.66 -2.38 -0.02 1.05 16 27 H 0.06 0.97 8.07 -2.39 -0.02 0.95 16 28 H 0.05 0.95 6.36 -2.39 -0.02 0.94 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.28 6.20 -2.39 -0.01 1.27 16 33 H 0.41 10.39 8.47 -92.71 -0.79 9.61 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 39 H 0.06 1.29 6.36 -2.39 -0.02 1.27 16 40 H 0.08 2.32 5.15 -2.38 -0.01 2.31 16 41 H 0.04 1.01 5.60 -2.39 -0.01 1.00 16 42 H 0.04 1.19 6.04 -2.39 -0.01 1.18 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.19 6.71 -2.39 -0.02 1.18 16 Total: -1.00 -67.78 336.87 3.84 -63.94 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.21 Total: 16.23 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 3.95 Total: -14.50 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -2.29 Total: -77.37 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.06 Total: -33.19 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.78 3.84 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440728708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.026 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds