Wall clock time and date at job start Tue Mar 31 2020 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.62082 * 2 1 4 4 C 1.51269 * 109.62737 * 239.61896 * 2 1 3 5 5 O 1.20764 * 120.84732 * 111.45881 * 4 2 1 6 6 C 1.51267 * 118.29872 * 291.43838 * 4 2 1 7 7 C 1.53222 * 108.53909 * 308.65220 * 6 4 2 8 8 C 1.52957 * 109.40356 * 54.62599 * 7 6 4 9 9 H 1.08998 * 109.41159 * 56.44381 * 8 7 6 10 10 C 1.50699 * 109.41252 * 176.29600 * 8 7 6 11 11 O 1.21285 * 120.00226 * 96.22655 * 10 8 7 12 12 N 1.34783 * 120.00131 * 276.22231 * 10 8 7 13 13 C 1.46504 * 119.99874 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46580 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46837 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99956 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00417 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99603 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00483 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47251 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47064 * 299.99958 * 19 17 15 22 22 H 1.48500 * 109.46945 * 60.00088 * 19 17 15 23 23 C 1.52955 * 109.76347 * 296.36927 * 8 7 6 24 24 C 1.53004 * 109.48546 * 183.61469 * 23 8 7 25 25 C 1.53011 * 109.48108 * 303.65168 * 23 8 7 26 26 H 1.09002 * 109.46851 * 180.38555 * 1 2 3 27 27 H 1.08993 * 109.47312 * 300.37926 * 1 2 3 28 28 H 1.09000 * 109.47310 * 60.38422 * 1 2 3 29 29 H 1.08999 * 109.62293 * 188.93874 * 6 4 2 30 30 H 1.08996 * 109.62426 * 68.37075 * 6 4 2 31 31 H 1.09003 * 109.48365 * 294.64840 * 7 6 4 32 32 H 1.08994 * 109.48596 * 174.61037 * 7 6 4 33 33 H 0.97000 * 119.99724 * 0.02562 * 12 10 8 34 34 H 1.09005 * 109.46944 * 60.00456 * 13 12 10 35 35 H 1.08996 * 109.47242 * 300.00325 * 13 12 10 36 36 H 1.08998 * 109.46926 * 60.00539 * 14 13 12 37 37 H 1.08996 * 109.47418 * 299.99997 * 14 13 12 38 38 H 0.96994 * 119.99806 * 0.02562 * 18 17 15 39 39 H 1.09001 * 109.47267 * 61.18617 * 24 23 8 40 40 H 1.09000 * 109.47065 * 181.18785 * 24 23 8 41 41 H 1.08998 * 109.46537 * 301.18694 * 24 23 8 42 42 H 1.08997 * 109.46462 * 59.99714 * 25 23 8 43 43 H 1.08995 * 109.46798 * 179.97438 * 25 23 8 44 44 H 1.08996 * 109.47119 * 300.00220 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0268 0.0000 4 6 2.0381 -0.7206 -1.2291 5 8 2.6034 -0.1187 -2.1104 6 6 1.8205 -2.2144 -1.3259 7 6 2.3286 -2.8654 -0.0353 8 6 1.6509 -2.2063 1.1672 9 1 0.5689 -2.2837 1.0607 10 6 2.0812 -2.9063 2.4305 11 8 2.9935 -2.4577 3.0918 12 7 1.4520 -4.0309 2.8255 13 6 1.8707 -4.7117 4.0534 14 6 1.0014 -5.9519 4.2705 15 6 1.4316 -6.6519 5.5338 16 1 2.2435 -6.2519 6.1231 17 6 0.7887 -7.8028 5.9375 18 7 -0.2004 -8.2895 5.2202 19 14 1.3215 -8.6701 7.5038 20 1 0.4779 -9.8738 7.7146 21 1 2.7446 -9.0771 7.3846 22 1 1.1651 -7.7484 8.6576 23 6 2.0502 -0.7316 1.2419 24 6 1.4419 -0.1010 2.4962 25 6 3.5749 -0.6182 1.3016 26 1 -0.3633 -1.0277 0.0069 27 1 -0.3633 0.5197 0.8865 28 1 -0.3634 0.5078 -0.8934 29 1 2.3731 -2.6104 -2.1778 30 1 0.7574 -2.4224 -1.4470 31 1 3.4080 -2.7330 0.0381 32 1 2.0927 -3.9294 -0.0474 33 1 0.7226 -4.3899 2.2965 34 1 1.7575 -4.0352 4.9006 35 1 2.9149 -5.0114 3.9647 36 1 1.1150 -6.6281 3.4233 37 1 -0.0429 -5.6526 4.3591 38 1 -0.4773 -7.8390 4.4071 39 1 1.8263 -0.6085 3.3810 40 1 1.7091 0.9549 2.5381 41 1 0.3570 -0.2003 2.4630 42 1 4.0078 -1.0670 0.4076 43 1 3.8592 0.4327 1.3543 44 1 3.9437 -1.1396 2.1848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440728709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:19 Heat of formation + Delta-G solvation = -106.798963 kcal Electronic energy + Delta-G solvation = -23066.567309 eV Core-core repulsion = 19789.694860 eV Total energy + Delta-G solvation = -3276.872449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36782 -39.30095 -37.27218 -35.10631 -33.65688 -33.00940 -31.52308 -29.82274 -27.97946 -27.26735 -24.94146 -24.32180 -22.95157 -21.59299 -20.87432 -20.06751 -18.14247 -17.31790 -16.59252 -16.23473 -15.83782 -15.36087 -15.14236 -14.81353 -14.57852 -14.40701 -13.83933 -13.75865 -13.47912 -13.21567 -12.97223 -12.76149 -12.57310 -12.28763 -12.04414 -11.90655 -11.85448 -11.70778 -11.63877 -11.40033 -11.01459 -10.94594 -10.78717 -10.47116 -10.46138 -10.22708 -10.00726 -9.55195 -9.25151 -8.70224 -8.62890 -8.41444 -6.48210 -4.18608 1.71196 2.82977 3.39696 3.41619 3.48848 3.60487 3.80820 4.19883 4.37420 4.47210 4.57046 4.62322 4.74655 4.86619 4.99730 5.08208 5.10066 5.23216 5.27526 5.29906 5.39390 5.45415 5.55910 5.60262 5.66206 5.71870 5.76181 5.85174 5.93030 5.97171 6.10276 6.15860 6.16356 6.30169 6.44916 6.55461 6.84012 7.18944 7.24018 7.28902 7.85470 8.03919 8.33375 8.53502 8.75490 9.53324 10.92817 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.003394 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.966332 B = 8249.018938 C = 8458.454336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.370 3.630 5 O -0.460 6.460 6 C -0.168 4.168 7 C -0.108 4.108 8 C -0.106 4.106 9 H 0.096 0.904 10 C 0.515 3.485 11 O -0.538 6.538 12 N -0.723 5.723 13 C 0.129 3.871 14 C 0.000 4.000 15 C -0.603 4.603 16 H 0.053 0.947 17 C 0.018 3.982 18 N -0.910 5.910 19 Si 1.070 2.930 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 C -0.030 4.030 24 C -0.150 4.150 25 C -0.167 4.167 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.396 0.604 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.268 0.732 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 14.658 -11.949 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 H 0.114 0.886 4 C 0.245 3.755 5 O -0.333 6.333 6 C -0.206 4.206 7 C -0.145 4.145 8 C -0.127 4.127 9 H 0.114 0.886 10 C 0.301 3.699 11 O -0.417 6.417 12 N -0.372 5.372 13 C 0.007 3.993 14 C -0.038 4.038 15 C -0.642 4.642 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.545 5.545 19 Si 0.898 3.102 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.030 4.030 24 C -0.207 4.207 25 C -0.224 4.224 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.952 13.970 -10.946 17.773 hybrid contribution -0.152 1.105 -1.270 1.691 sum 0.800 15.076 -12.216 19.420 Atomic orbital electron populations 1.21862 0.92638 1.02943 1.02941 1.22049 0.97832 1.00927 0.94158 0.88571 1.24879 0.73733 0.91246 0.85600 1.90398 1.32310 1.70654 1.39918 1.22306 1.04172 0.94191 0.99895 1.21529 1.01670 1.00177 0.91158 1.21471 1.02027 0.95480 0.93766 0.88554 1.20341 0.82564 0.80748 0.86287 1.90539 1.29774 1.65123 1.56244 1.46413 1.36919 1.26302 1.27552 1.21559 0.99330 0.94581 0.83868 1.19446 0.94785 0.91618 0.97929 1.21881 1.20992 1.12324 1.08979 0.92900 1.25880 0.94174 0.95278 1.03296 1.70813 1.26482 1.41404 1.15831 0.83516 0.75854 0.76228 0.74595 1.20708 1.21299 1.21303 1.20257 0.97000 0.91926 0.93834 1.22032 1.00305 1.00790 0.97573 1.22403 0.93460 1.02007 1.04506 0.91606 0.90705 0.92275 0.88944 0.88033 0.90111 0.89893 0.77083 0.92372 0.92402 0.96889 0.96884 0.92188 0.90605 0.92461 0.92486 0.93536 0.93174 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.38 37.16 0.31 -0.75 16 2 C -0.13 -1.20 2.23 -91.37 -0.20 -1.41 16 3 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 4 C 0.37 3.89 5.09 -28.48 -0.14 3.74 16 5 O -0.46 -6.36 17.89 6.00 0.11 -6.26 16 6 C -0.17 -1.40 5.90 -27.49 -0.16 -1.56 16 7 C -0.11 -1.02 4.93 -26.64 -0.13 -1.15 16 8 C -0.11 -1.11 1.62 -91.82 -0.15 -1.26 16 9 H 0.10 0.82 6.41 -51.93 -0.33 0.49 16 10 C 0.51 7.53 6.12 -10.98 -0.07 7.46 16 11 O -0.54 -9.54 11.99 5.55 0.07 -9.48 16 12 N -0.72 -11.29 5.56 -60.29 -0.33 -11.62 16 13 C 0.13 2.60 5.61 -4.04 -0.02 2.58 16 14 C 0.00 -0.01 4.40 -27.88 -0.12 -0.13 16 15 C -0.60 -16.57 9.11 -34.44 -0.31 -16.88 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -26.78 13.65 55.43 0.76 -26.03 16 19 Si 1.07 24.60 29.90 -169.99 -5.08 19.52 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.03 -0.31 0.29 -154.40 -0.05 -0.35 16 24 C -0.15 -1.60 7.59 37.16 0.28 -1.32 16 25 C -0.17 -2.01 7.60 37.16 0.28 -1.73 16 26 H 0.07 0.42 6.00 -51.93 -0.31 0.11 16 27 H 0.07 0.50 6.46 -51.93 -0.34 0.17 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.64 7.82 -51.93 -0.41 0.23 16 31 H 0.08 0.86 6.19 -51.93 -0.32 0.54 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.40 5.24 8.47 -40.82 -0.35 4.90 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 37 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 38 H 0.27 7.75 7.22 -40.82 -0.29 7.45 16 39 H 0.08 1.02 6.15 -51.93 -0.32 0.70 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 42 H 0.05 0.55 5.60 -51.93 -0.29 0.26 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.11 1.55 5.14 -51.93 -0.27 1.28 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -31.91 335.46 -6.99 -38.90 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.98 Total: 2.26 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -0.58 Total: -12.36 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.42 Total: -37.65 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.17 Total: -15.73 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.91 -6.99 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440728709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.896 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds