Wall clock time and date at job start Tue Mar 31 2020 05:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.62804 * 2 1 4 4 C 1.51268 * 109.62502 * 120.38149 * 2 1 3 5 5 O 1.20758 * 120.85287 * 351.27661 * 4 2 1 6 6 C 1.51273 * 118.29871 * 171.24949 * 4 2 1 7 7 C 1.53229 * 108.53799 * 308.65337 * 6 4 2 8 8 C 1.52957 * 109.40573 * 54.62723 * 7 6 4 9 9 H 1.09003 * 109.41667 * 56.43515 * 8 7 6 10 10 C 1.50699 * 109.41536 * 176.29666 * 8 7 6 11 11 O 1.21281 * 120.00355 * 96.25393 * 10 8 7 12 12 N 1.34781 * 119.99610 * 276.25231 * 10 8 7 13 13 C 1.46502 * 119.99707 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47031 * 180.02562 * 13 12 10 15 15 C 1.50707 * 109.47156 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99858 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00007 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00162 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00115 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47351 * 270.00377 * 19 17 15 21 21 H 1.48510 * 109.46801 * 30.00362 * 19 17 15 22 22 H 1.48499 * 109.47257 * 149.99887 * 19 17 15 23 23 C 1.52959 * 109.75801 * 296.36865 * 8 7 6 24 24 C 1.52998 * 109.48199 * 183.61300 * 23 8 7 25 25 C 1.52999 * 109.48215 * 303.64803 * 23 8 7 26 26 H 1.08998 * 109.46981 * 299.62058 * 1 2 3 27 27 H 1.09001 * 109.47160 * 59.61775 * 1 2 3 28 28 H 1.08997 * 109.47383 * 179.62078 * 1 2 3 29 29 H 1.09000 * 109.62288 * 188.93730 * 6 4 2 30 30 H 1.09001 * 109.78203 * 68.46317 * 6 4 2 31 31 H 1.08996 * 109.48150 * 294.64644 * 7 6 4 32 32 H 1.09001 * 109.47901 * 174.60354 * 7 6 4 33 33 H 0.97001 * 119.99980 * 0.02562 * 12 10 8 34 34 H 1.08997 * 109.46846 * 60.00329 * 13 12 10 35 35 H 1.09000 * 109.47176 * 300.00267 * 13 12 10 36 36 H 1.08997 * 109.47417 * 60.00213 * 14 13 12 37 37 H 1.09004 * 109.47203 * 300.00384 * 14 13 12 38 38 H 0.96993 * 120.00396 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47630 * 57.36145 * 24 23 8 40 40 H 1.09002 * 109.47259 * 177.36167 * 24 23 8 41 41 H 1.09003 * 109.47388 * 297.36049 * 24 23 8 42 42 H 1.09007 * 109.46946 * 60.00196 * 25 23 8 43 43 H 1.09002 * 109.47414 * 180.02562 * 25 23 8 44 44 H 1.08997 * 109.47489 * 300.00332 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0380 -0.7206 1.2292 5 8 1.2809 -1.0540 2.1088 6 6 3.5189 -1.0134 1.3280 7 6 3.9653 -1.7080 0.0372 8 6 3.5718 -0.8481 -1.1650 9 1 4.0051 0.1462 -1.0567 10 6 4.0903 -1.4856 -2.4282 11 8 3.3642 -2.1950 -3.0917 12 7 5.3612 -1.2673 -2.8205 13 6 5.8655 -1.8875 -4.0482 14 6 7.3250 -1.4816 -4.2623 15 6 7.8436 -2.1191 -5.5255 16 1 7.1968 -2.7503 -6.1168 17 6 9.1440 -1.8966 -5.9264 18 7 9.5964 -2.4525 -7.0290 19 14 10.2626 -0.8044 -4.9041 20 1 10.1414 0.6009 -5.3683 21 1 9.8667 -0.8897 -3.4753 22 1 11.6690 -1.2563 -5.0558 23 6 2.0485 -0.7330 -1.2419 24 6 1.6587 0.0521 -2.4959 25 6 1.4335 -2.1325 -1.3042 26 1 -0.3633 0.5079 0.8934 27 1 -0.3633 0.5198 -0.8865 28 1 -0.3634 -1.0276 -0.0068 29 1 3.7067 -1.6674 2.1795 30 1 4.0715 -0.0822 1.4527 31 1 3.4809 -2.6815 -0.0381 32 1 5.0472 -1.8401 0.0510 33 1 5.9420 -0.7002 -2.2896 34 1 5.2672 -1.5539 -4.8960 35 1 5.7993 -2.9720 -3.9611 36 1 7.9231 -1.8155 -3.4144 37 1 7.3916 -0.3971 -4.3491 38 1 10.5110 -2.2957 -7.3113 39 1 2.0687 -0.4425 -3.3764 40 1 0.5724 0.0938 -2.5755 41 1 2.0572 1.0645 -2.4293 42 1 1.7109 -2.6914 -0.4103 43 1 0.3480 -2.0504 -1.3594 44 1 1.8035 -2.6530 -2.1875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440728710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:21 Heat of formation + Delta-G solvation = -98.441911 kcal Electronic energy + Delta-G solvation = -23009.942949 eV Core-core repulsion = 19733.432889 eV Total energy + Delta-G solvation = -3276.510060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32535 -39.34406 -37.17119 -35.03740 -33.98693 -32.79722 -31.09549 -30.27161 -27.82733 -27.42951 -25.71637 -24.85006 -22.45305 -20.98803 -20.76570 -19.87685 -18.36163 -17.06875 -16.80182 -16.16242 -15.98794 -15.50546 -15.31349 -14.92213 -14.62316 -14.19732 -13.87749 -13.74507 -13.43086 -13.23321 -12.81999 -12.74790 -12.63769 -12.45749 -12.10231 -11.93993 -11.71660 -11.55187 -11.50756 -11.49619 -11.18537 -10.89528 -10.76483 -10.57787 -10.42677 -10.23156 -9.99749 -9.55103 -9.41899 -9.10586 -8.68464 -8.57928 -6.14763 -4.15198 1.72507 2.82335 3.21710 3.29268 3.30510 3.46279 3.78503 4.24832 4.33878 4.38050 4.53208 4.62460 4.83181 4.90605 4.98272 5.07183 5.16408 5.18109 5.23546 5.30360 5.38278 5.52965 5.56749 5.70069 5.72932 5.75873 5.77418 5.86254 5.93818 5.99368 6.06804 6.14957 6.16141 6.29683 6.47118 6.51152 6.81657 7.09252 7.18158 7.26779 7.62714 7.84031 8.39379 8.53138 8.89555 9.45212 10.98314 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031540 B = 0.003579 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.553592 B = 7821.991193 C = 8235.437075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 H 0.103 0.897 4 C 0.366 3.634 5 O -0.456 6.456 6 C -0.168 4.168 7 C -0.107 4.107 8 C -0.106 4.106 9 H 0.094 0.906 10 C 0.515 3.485 11 O -0.535 6.535 12 N -0.725 5.725 13 C 0.130 3.870 14 C -0.022 4.022 15 C -0.524 4.524 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.266 1.266 22 H -0.287 1.287 23 C -0.028 4.028 24 C -0.149 4.149 25 C -0.169 4.169 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.395 0.605 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.265 0.735 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 7.259 16.359 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 H 0.121 0.879 4 C 0.242 3.758 5 O -0.329 6.329 6 C -0.206 4.206 7 C -0.145 4.145 8 C -0.127 4.127 9 H 0.112 0.888 10 C 0.301 3.699 11 O -0.413 6.413 12 N -0.374 5.374 13 C 0.007 3.993 14 C -0.060 4.060 15 C -0.562 4.562 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.191 1.191 22 H -0.213 1.213 23 C -0.029 4.029 24 C -0.206 4.206 25 C -0.225 4.225 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.434 6.533 16.200 22.659 hybrid contribution 1.227 0.977 0.643 1.695 sum -13.207 7.510 16.843 22.683 Atomic orbital electron populations 1.21742 0.93042 1.03039 1.01994 1.21969 0.98153 1.00696 0.94289 0.87930 1.24884 0.90781 0.74467 0.85708 1.90383 1.60131 1.42493 1.39877 1.22317 0.95111 1.03292 0.99870 1.21531 1.02457 0.99393 0.91147 1.21449 0.96809 1.00634 0.93829 0.88752 1.20307 0.82019 0.81299 0.86283 1.90554 1.56046 1.38749 1.56000 1.46404 1.12402 1.51021 1.27582 1.21509 0.96409 0.97333 0.84005 1.19790 0.91003 0.96820 0.98347 1.20917 0.97836 1.30776 1.06692 0.90644 1.25005 0.97903 0.95525 0.94846 1.69896 1.16815 1.44055 1.22852 0.86754 0.80078 0.81033 0.81207 1.20221 1.19100 1.21258 1.20229 0.92133 0.96761 0.93728 1.22017 1.01773 0.99229 0.97586 1.22452 1.00345 0.95302 1.04414 0.92299 0.91681 0.91699 0.89004 0.88132 0.90078 0.89931 0.77136 0.91940 0.91943 0.96047 0.96483 0.92515 0.90580 0.92188 0.92935 0.93583 0.92748 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.87 37.16 0.29 -0.96 16 2 C -0.13 -1.15 2.25 -91.37 -0.21 -1.36 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.37 3.63 5.60 -28.48 -0.16 3.47 16 5 O -0.46 -5.96 16.86 6.00 0.10 -5.86 16 6 C -0.17 -1.30 6.17 -27.48 -0.17 -1.47 16 7 C -0.11 -0.95 4.93 -26.63 -0.13 -1.08 16 8 C -0.11 -1.04 1.77 -91.82 -0.16 -1.21 16 9 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 10 C 0.52 7.17 6.07 -10.98 -0.07 7.10 16 11 O -0.54 -9.18 12.02 5.56 0.07 -9.12 16 12 N -0.72 -10.58 5.56 -60.30 -0.33 -10.92 16 13 C 0.13 2.47 5.61 -4.04 -0.02 2.45 16 14 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 15 C -0.52 -14.30 9.66 -34.44 -0.33 -14.64 16 16 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 19 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -5.81 6.54 56.52 0.37 -5.45 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.03 -0.28 0.29 -154.41 -0.04 -0.32 16 24 C -0.15 -1.53 7.88 37.16 0.29 -1.24 16 25 C -0.17 -1.95 7.10 37.16 0.26 -1.68 16 26 H 0.06 0.52 8.04 -51.93 -0.42 0.11 16 27 H 0.06 0.50 6.72 -51.93 -0.35 0.15 16 28 H 0.06 0.64 6.33 -51.93 -0.33 0.31 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.82 6.19 -51.93 -0.32 0.50 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 4.72 8.47 -40.82 -0.35 4.38 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 37 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.08 0.99 6.05 -51.93 -0.31 0.67 16 40 H 0.06 0.56 6.76 -51.93 -0.35 0.21 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.53 5.60 -51.93 -0.29 0.24 16 43 H 0.05 0.58 6.36 -51.93 -0.33 0.25 16 44 H 0.11 1.49 5.14 -51.93 -0.27 1.22 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -31.75 333.31 -6.75 -38.50 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.05 Total: 2.32 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.66 Total: -9.67 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.44 Total: -37.07 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.17 Total: -14.97 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.75 -6.75 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440728710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.939 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds