Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.62399 * 2 1 4 4 C 1.51266 * 109.62682 * 120.38054 * 2 1 3 5 5 O 1.20765 * 120.85300 * 248.53571 * 4 2 1 6 6 C 1.51276 * 118.30105 * 68.80922 * 4 2 1 7 7 C 1.52798 * 108.76052 * 51.03548 * 6 4 2 8 8 C 1.52953 * 109.48833 * 305.61258 * 7 6 4 9 9 H 1.08999 * 109.41176 * 303.36074 * 8 7 6 10 10 C 1.50701 * 109.41454 * 183.57128 * 8 7 6 11 11 O 1.21272 * 120.00384 * 263.38441 * 10 8 7 12 12 N 1.34779 * 119.99752 * 83.38827 * 10 8 7 13 13 C 1.46501 * 119.99850 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46814 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47029 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00130 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00316 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00121 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00364 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46800 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47073 * 119.99432 * 19 17 15 22 22 H 1.48498 * 109.47386 * 239.99889 * 19 17 15 23 23 C 1.52958 * 109.81641 * 63.46553 * 8 7 6 24 24 C 1.53004 * 109.47912 * 176.42283 * 23 8 7 25 25 C 1.52998 * 109.49449 * 56.39044 * 23 8 7 26 26 H 1.09004 * 109.47138 * 299.62171 * 1 2 3 27 27 H 1.09004 * 109.46956 * 59.61498 * 1 2 3 28 28 H 1.09003 * 109.47000 * 179.61712 * 1 2 3 29 29 H 1.08998 * 109.62543 * 170.81258 * 6 4 2 30 30 H 1.09000 * 109.62419 * 291.38864 * 6 4 2 31 31 H 1.08995 * 109.54653 * 185.53716 * 7 6 4 32 32 H 1.09006 * 109.33300 * 65.55224 * 7 6 4 33 33 H 0.97002 * 119.99867 * 359.97438 * 12 10 8 34 34 H 1.08998 * 109.46637 * 299.99560 * 13 12 10 35 35 H 1.08993 * 109.47148 * 59.99835 * 13 12 10 36 36 H 1.08998 * 109.47343 * 299.99353 * 14 13 12 37 37 H 1.08993 * 109.47650 * 59.99791 * 14 13 12 38 38 H 0.96994 * 120.00404 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.47065 * 178.54358 * 24 23 8 40 40 H 1.08999 * 109.47378 * 298.54490 * 24 23 8 41 41 H 1.09001 * 109.47297 * 58.55409 * 24 23 8 42 42 H 1.08999 * 109.47267 * 300.06152 * 25 23 8 43 43 H 1.09001 * 109.47337 * 60.06128 * 25 23 8 44 44 H 1.09002 * 109.47261 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0381 -0.7206 1.2291 5 8 2.6034 -0.1188 2.1104 6 6 1.8255 -2.2153 1.3234 7 6 2.3284 -2.8654 0.0352 8 6 1.6508 -2.2063 -1.1672 9 1 0.5688 -2.2848 -1.0613 10 6 2.0811 -2.9064 -2.4305 11 8 2.9887 -2.4539 -3.0955 12 7 1.4571 -4.0353 -2.8213 13 6 1.8757 -4.7161 -4.0491 14 6 1.0127 -5.9616 -4.2612 15 6 1.4437 -6.6623 -5.5238 16 1 2.2520 -6.2594 -6.1160 17 6 0.8055 -7.8172 -5.9236 18 7 -0.1791 -8.3077 -5.2028 19 14 1.3393 -8.6855 -7.4891 20 1 2.4598 -7.9366 -8.1130 21 1 1.7854 -10.0639 -7.1632 22 1 0.1969 -8.7457 -8.4359 23 6 2.0487 -0.7313 -1.2426 24 6 1.4390 -0.1019 -2.4968 25 6 3.5731 -0.6162 -1.3033 26 1 -0.3634 0.5080 0.8934 27 1 -0.3633 0.5198 -0.8865 28 1 -0.3633 -1.0277 -0.0069 29 1 2.3813 -2.6113 2.1732 30 1 0.7633 -2.4270 1.4462 31 1 2.0925 -3.9294 0.0475 32 1 3.4079 -2.7331 -0.0381 33 1 0.7313 -4.3973 -2.2892 34 1 1.7560 -4.0420 -4.8972 35 1 2.9218 -5.0097 -3.9632 36 1 1.1329 -6.6356 -3.4130 37 1 -0.0335 -5.6684 -4.3469 38 1 -0.6278 -9.1204 -5.4838 39 1 1.7012 0.9555 -2.5368 40 1 1.8270 -0.6062 -3.3818 41 1 0.3545 -0.2062 -2.4653 42 1 4.0073 -1.0651 -0.4100 43 1 3.9419 -1.1364 -2.1873 44 1 3.8563 0.4351 -1.3565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440728711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = -103.386992 kcal Electronic energy + Delta-G solvation = -23029.536386 eV Core-core repulsion = 19752.811891 eV Total energy + Delta-G solvation = -3276.724495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31952 -39.23843 -37.21154 -34.93131 -33.58183 -32.80716 -31.47562 -29.95675 -28.03708 -27.23123 -24.97771 -24.61824 -22.91118 -21.32257 -20.74525 -19.98537 -18.06379 -17.12701 -16.44742 -16.09310 -15.80098 -15.30023 -14.88926 -14.77791 -14.60461 -14.38616 -14.29287 -13.71564 -13.30113 -13.15089 -12.85855 -12.70817 -12.52306 -12.32883 -11.99655 -11.85822 -11.80668 -11.60092 -11.38955 -11.22477 -11.06674 -10.92643 -10.73979 -10.65041 -10.40835 -10.36060 -9.72659 -9.50737 -9.39672 -9.00618 -8.58471 -8.39702 -6.13287 -4.16152 1.74948 2.90820 3.25641 3.33442 3.37879 3.57371 3.85204 4.24836 4.38221 4.42336 4.61872 4.68577 4.79218 4.91744 5.05267 5.13499 5.15122 5.24073 5.28315 5.33618 5.44205 5.50036 5.60925 5.64828 5.70636 5.76207 5.81171 5.89574 5.97319 6.02359 6.16905 6.29790 6.30023 6.35586 6.51432 6.70509 6.95221 7.27783 7.47423 7.56865 7.84948 7.96356 8.23732 8.62340 8.90178 9.49131 10.98278 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032994 B = 0.003382 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.437983 B = 8278.099432 C = 8489.885001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 H 0.095 0.905 4 C 0.370 3.630 5 O -0.460 6.460 6 C -0.168 4.168 7 C -0.108 4.108 8 C -0.106 4.106 9 H 0.096 0.904 10 C 0.514 3.486 11 O -0.540 6.540 12 N -0.720 5.720 13 C 0.121 3.879 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.029 4.029 24 C -0.150 4.150 25 C -0.167 4.167 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.397 0.603 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.106 0.894 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 14.250 11.935 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 H 0.114 0.886 4 C 0.246 3.754 5 O -0.334 6.334 6 C -0.206 4.206 7 C -0.145 4.145 8 C -0.128 4.128 9 H 0.115 0.885 10 C 0.300 3.700 11 O -0.419 6.419 12 N -0.370 5.370 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.030 4.030 24 C -0.207 4.207 25 C -0.224 4.224 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.230 0.770 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.724 14.726 11.903 18.949 hybrid contribution -0.301 -0.838 -0.565 1.054 sum 0.423 13.888 11.338 17.934 Atomic orbital electron populations 1.21864 0.92649 1.02972 1.02901 1.22047 0.97841 1.00900 0.94188 0.88626 1.24882 0.73685 0.91276 0.85574 1.90396 1.32343 1.70715 1.39907 1.22230 1.04218 0.94159 0.99961 1.21453 1.01667 1.00247 0.91176 1.21470 1.02038 0.95408 0.93852 0.88543 1.20321 0.82543 0.80863 0.86285 1.90530 1.30063 1.65213 1.56085 1.46406 1.37238 1.25801 1.27509 1.21718 0.99504 0.95085 0.83773 1.19324 0.94911 0.90583 0.97714 1.21087 1.18146 1.08867 1.07907 0.92225 1.24992 0.94874 0.97152 0.97249 1.69957 1.22876 1.21858 1.38590 0.86472 0.78647 0.79473 0.83075 1.19573 1.20919 1.20924 1.20249 0.96969 0.92000 0.93775 1.22032 1.00309 1.00720 0.97622 1.22400 0.93512 1.01940 1.04508 0.92330 0.90716 0.91557 0.88983 0.88047 0.89793 0.90185 0.76968 0.92555 0.92582 0.95977 0.95969 0.92886 0.92545 0.90531 0.92489 0.93557 0.87534 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.38 37.16 0.31 -0.76 16 2 C -0.13 -1.22 2.23 -91.38 -0.20 -1.42 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.37 3.93 5.10 -28.48 -0.15 3.78 16 5 O -0.46 -6.42 17.89 5.99 0.11 -6.31 16 6 C -0.17 -1.42 5.88 -27.70 -0.16 -1.58 16 7 C -0.11 -1.03 4.92 -26.86 -0.13 -1.16 16 8 C -0.11 -1.12 1.61 -91.82 -0.15 -1.27 16 9 H 0.10 0.83 6.42 -51.93 -0.33 0.50 16 10 C 0.51 7.53 6.13 -10.98 -0.07 7.46 16 11 O -0.54 -9.56 11.98 5.56 0.07 -9.50 16 12 N -0.72 -11.27 5.56 -60.30 -0.33 -11.60 16 13 C 0.12 2.42 5.61 -4.04 -0.02 2.40 16 14 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 15 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.03 -0.31 0.29 -154.41 -0.05 -0.35 16 24 C -0.15 -1.61 7.57 37.16 0.28 -1.33 16 25 C -0.17 -2.02 7.60 37.16 0.28 -1.74 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16 28 H 0.07 0.43 6.02 -51.93 -0.31 0.11 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.65 7.84 -51.93 -0.41 0.24 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.86 6.20 -51.93 -0.32 0.54 16 33 H 0.40 5.32 8.47 -40.82 -0.35 4.97 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.03 6.15 -51.93 -0.32 0.71 16 41 H 0.06 0.53 6.48 -51.93 -0.34 0.20 16 42 H 0.05 0.55 5.61 -51.93 -0.29 0.26 16 43 H 0.11 1.55 5.15 -51.93 -0.27 1.28 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -31.05 336.80 -7.01 -38.06 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.04 Total: 1.83 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.60 Total: -8.70 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.40 Total: -36.43 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.17 Total: -15.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.05 -7.01 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440728711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.326 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds