Wall clock time and date at job start Tue Mar 31 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00288 * 2 1 4 4 C 1.52993 * 109.47173 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47168 * 65.00179 * 4 3 2 6 6 C 1.37099 * 120.00202 * 89.99835 * 5 4 3 7 7 H 1.07999 * 119.99975 * 304.95546 * 6 5 4 8 8 C 1.38946 * 120.00088 * 124.95356 * 6 5 4 9 9 N 1.31413 * 120.00237 * 158.87244 * 8 6 5 10 10 Si 1.86801 * 120.00246 * 338.86842 * 8 6 5 11 11 H 1.48504 * 109.47016 * 95.25445 * 10 8 6 12 12 H 1.48498 * 109.47307 * 215.25356 * 10 8 6 13 13 H 1.48503 * 109.46856 * 335.25702 * 10 8 6 14 14 C 1.34774 * 120.00179 * 269.99533 * 5 4 3 15 15 O 1.21295 * 119.99448 * 5.48014 * 14 5 4 16 16 C 1.50696 * 120.00613 * 185.47926 * 14 5 4 17 17 H 1.09000 * 115.55094 * 38.11525 * 16 14 5 18 18 C 1.53029 * 117.50869 * 183.82368 * 16 14 5 19 19 C 1.52805 * 59.96843 * 107.46975 * 18 16 14 20 20 C 1.53150 * 117.74916 * 107.63168 * 19 18 16 21 21 C 1.53172 * 108.88884 * 199.62029 * 20 19 18 22 22 C 1.52945 * 109.45225 * 303.43860 * 21 20 19 23 23 C 1.52946 * 109.82080 * 62.97605 * 22 21 20 24 24 C 1.53143 * 117.74951 * 252.36855 * 19 18 16 25 25 H 1.08997 * 109.47043 * 300.00582 * 1 2 3 26 26 H 1.09004 * 109.46539 * 59.99887 * 1 2 3 27 27 H 1.08998 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47093 * 59.99578 * 3 2 1 29 29 H 1.09001 * 109.47104 * 299.99933 * 3 2 1 30 30 H 1.09003 * 109.46931 * 184.99838 * 4 3 2 31 31 H 1.08993 * 109.47681 * 304.99630 * 4 3 2 32 32 H 0.97003 * 120.00577 * 180.02562 * 9 8 6 33 33 H 1.09004 * 117.50422 * 214.95264 * 18 16 14 34 34 H 1.08998 * 117.50523 * 359.95887 * 18 16 14 35 35 H 1.09004 * 109.56895 * 319.43732 * 20 19 18 36 36 H 1.09003 * 109.57105 * 79.79718 * 20 19 18 37 37 H 1.09000 * 109.48107 * 183.44174 * 21 20 19 38 38 H 1.09006 * 109.48101 * 63.42900 * 21 20 19 39 39 H 1.09004 * 109.41022 * 302.87266 * 22 21 20 40 40 H 1.08995 * 109.41431 * 183.09197 * 22 21 20 41 41 H 1.09000 * 109.47126 * 177.02310 * 23 22 21 42 42 H 1.08997 * 109.47270 * 57.01662 * 23 22 21 43 43 H 1.09000 * 109.57497 * 280.19636 * 24 19 18 44 44 H 1.09004 * 109.57010 * 40.56101 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2683 1.3461 -2.3384 7 1 3.5337 2.0423 -2.7155 8 6 5.5090 1.2433 -2.9555 9 7 5.6614 1.6486 -4.1963 10 14 6.9604 0.5289 -2.0215 11 1 7.0867 -0.9174 -2.3339 12 1 8.2039 1.2329 -2.4254 13 1 6.7444 0.7032 -0.5626 14 6 4.0959 -0.7760 -1.3332 15 8 3.7440 -1.4742 -0.4059 16 6 4.6665 -1.4068 -2.5771 17 1 5.4920 -0.8674 -3.0416 18 6 4.6933 -2.9353 -2.6460 19 6 3.6995 -2.1487 -3.4995 20 6 3.9567 -2.0748 -5.0074 21 6 3.1801 -0.8877 -5.5853 22 6 1.6956 -1.0383 -5.2497 23 6 1.5003 -1.0004 -3.7333 24 6 2.2228 -2.1913 -3.0960 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.9785 2.1765 0.0902 31 1 3.8508 0.5686 0.8427 32 1 6.5274 1.5764 -4.6272 33 1 5.5363 -3.4015 -3.1560 34 1 4.2989 -3.4847 -1.7912 35 1 5.0226 -1.9372 -5.1897 36 1 3.6196 -2.9969 -5.4809 37 1 3.3073 -0.8624 -6.6676 38 1 3.5581 0.0390 -5.1533 39 1 1.3310 -1.9893 -5.6383 40 1 1.1361 -0.2227 -5.7077 41 1 0.4364 -1.0550 -3.5025 42 1 1.9109 -0.0717 -3.3372 43 1 1.7749 -3.1207 -3.4474 44 1 2.1390 -2.1310 -2.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:39 Heat of formation + Delta-G solvation = -71.487441 kcal Electronic energy + Delta-G solvation = -24983.046874 eV Core-core repulsion = 21707.705647 eV Total energy + Delta-G solvation = -3275.341227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40759 -39.36930 -38.35801 -36.54158 -35.51168 -34.01459 -31.67440 -31.02126 -28.45016 -27.21372 -26.45739 -25.25959 -23.57041 -22.89647 -21.87307 -21.08049 -19.65778 -19.03755 -17.53252 -17.24877 -16.94534 -16.39501 -16.33767 -16.04698 -15.81296 -15.23767 -15.15586 -14.69245 -14.57786 -14.38783 -13.97854 -13.61963 -13.54143 -13.35858 -13.15532 -12.94502 -12.81073 -12.62121 -12.52143 -12.26662 -12.09227 -11.90566 -11.83902 -11.65455 -11.40750 -10.99160 -10.97221 -10.61442 -10.49146 -10.38886 -10.19604 -9.31475 -8.42524 -6.16636 1.21144 1.29639 1.37243 1.91804 2.19180 2.68968 2.89811 3.01111 3.16316 3.80537 3.91448 4.02158 4.10459 4.26182 4.30145 4.33009 4.34648 4.46564 4.54972 4.57788 4.58757 4.59723 4.60613 4.72870 4.73663 4.83524 4.86059 4.90083 5.00645 5.03555 5.04527 5.11823 5.19166 5.23552 5.42921 5.51128 5.53161 5.65519 5.78791 5.85854 5.96846 6.43023 6.54774 7.09714 7.50010 7.99032 8.69344 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.011378 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.366447 B = 2460.402174 C = 3460.257479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.395 6.395 3 C 0.059 3.941 4 C 0.103 3.897 5 N -0.475 5.475 6 C -0.334 4.334 7 H 0.069 0.931 8 C 0.066 3.934 9 N -0.875 5.875 10 Si 0.881 3.119 11 H -0.259 1.259 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.529 3.471 15 O -0.595 6.595 16 C -0.195 4.195 17 H 0.110 0.890 18 C -0.157 4.157 19 C -0.071 4.071 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.104 4.104 23 C -0.105 4.105 24 C -0.077 4.077 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.276 0.724 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.080 0.920 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 -4.264 -0.414 8.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.314 6.314 3 C -0.018 4.018 4 C -0.020 4.020 5 N -0.197 5.197 6 C -0.461 4.461 7 H 0.087 0.913 8 C -0.140 4.140 9 N -0.511 5.511 10 Si 0.706 3.294 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.202 1.202 14 C 0.319 3.681 15 O -0.479 6.479 16 C -0.215 4.215 17 H 0.128 0.872 18 C -0.194 4.194 19 C -0.072 4.072 20 C -0.108 4.108 21 C -0.156 4.156 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.115 4.115 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.794 -4.688 -0.108 8.255 hybrid contribution 1.029 0.576 0.545 1.299 sum -5.764 -4.112 0.437 7.094 Atomic orbital electron populations 1.22803 0.80902 1.02819 1.00184 1.88128 1.20156 1.27758 1.95319 1.22839 0.93795 0.84976 1.00210 1.21691 0.93561 0.98874 0.87851 1.43511 1.61489 1.03951 1.10778 1.18493 0.99160 1.22826 1.05666 0.91307 1.25714 0.98328 0.94841 0.95084 1.69780 1.25424 1.45489 1.10391 0.87066 0.81874 0.79801 0.80631 1.18403 1.20591 1.20165 1.19837 0.78419 0.82605 0.87224 1.90505 1.53424 1.62645 1.41295 1.22614 1.04645 0.95113 0.99150 0.87221 1.23126 1.02188 0.91674 1.02431 1.21471 0.92336 1.00175 0.93231 1.21100 0.99463 0.99289 0.90944 1.21482 0.95628 0.98603 0.99871 1.21391 0.95875 1.01907 0.94969 1.21354 0.98982 0.97776 0.96147 1.21095 0.91801 0.98850 0.99707 0.92845 0.94357 0.89692 0.90815 0.94082 0.88497 0.92406 0.91342 0.87275 0.88797 0.93225 0.89298 0.91411 0.93106 0.90541 0.92230 0.91875 0.94492 0.90143 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.09 16 2 O -0.39 -15.53 9.27 -136.23 -1.26 -16.79 16 3 C 0.06 2.16 6.28 71.98 0.45 2.61 16 4 C 0.10 4.34 5.82 86.38 0.50 4.84 16 5 N -0.48 -23.08 1.85 -635.57 -1.18 -24.26 16 6 C -0.33 -17.19 9.27 84.04 0.78 -16.41 16 7 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 8 C 0.07 3.41 4.01 84.93 0.34 3.75 16 9 N -0.88 -45.98 13.96 21.66 0.30 -45.67 16 10 Si 0.88 41.97 24.85 68.60 1.70 43.67 16 11 H -0.26 -12.08 6.11 99.48 0.61 -11.47 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 14 C 0.53 26.21 4.66 87.66 0.41 26.61 16 15 O -0.59 -31.33 13.91 9.67 0.13 -31.20 16 16 C -0.19 -8.91 3.53 -11.58 -0.04 -8.95 16 17 H 0.11 5.38 3.00 -2.39 -0.01 5.37 16 18 C -0.16 -6.08 9.50 30.54 0.29 -5.79 16 19 C -0.07 -2.74 1.97 -52.20 -0.10 -2.84 16 20 C -0.07 -2.38 5.67 30.70 0.17 -2.21 16 21 C -0.12 -4.12 5.93 30.63 0.18 -3.94 16 22 C -0.10 -3.19 5.82 30.56 0.18 -3.01 16 23 C -0.11 -3.72 5.93 30.64 0.18 -3.54 16 24 C -0.08 -2.83 5.29 30.70 0.16 -2.66 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 3.70 8.04 -2.39 -0.02 3.69 16 31 H 0.06 2.53 7.50 -2.39 -0.02 2.51 16 32 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 34 H 0.09 3.73 7.68 -2.39 -0.02 3.71 16 35 H 0.05 1.75 8.09 -2.39 -0.02 1.73 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.05 2.07 6.29 -2.38 -0.02 2.05 16 Total: -1.00 -61.62 339.81 5.32 -56.31 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.86 Total: 27.38 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 4.76 Total: -9.44 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -0.88 Total: -69.94 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -1.13 Total: -47.98 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.70 Total: 43.67 kcal Total: -61.62 5.32 -56.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.179 kcal (2) G-P(sol) polarization free energy of solvation -61.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds