Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00410 * 2 1 4 4 C 1.53001 * 109.47383 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47199 * 64.99892 * 4 3 2 6 6 C 1.37097 * 120.00358 * 270.00276 * 5 4 3 7 7 H 1.07994 * 120.00435 * 138.99024 * 6 5 4 8 8 C 1.38955 * 119.99411 * 318.99391 * 6 5 4 9 9 N 1.31406 * 120.00229 * 352.68213 * 8 6 5 10 10 Si 1.86804 * 119.99720 * 172.68762 * 8 6 5 11 11 H 1.48503 * 109.46913 * 59.99841 * 10 8 6 12 12 H 1.48497 * 109.47027 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46888 * 299.99911 * 10 8 6 14 14 C 1.34782 * 119.99988 * 90.00021 * 5 4 3 15 15 O 1.21296 * 119.99765 * 355.55061 * 14 5 4 16 16 C 1.50695 * 119.99980 * 175.54740 * 14 5 4 17 17 H 1.08994 * 115.55190 * 335.15328 * 16 14 5 18 18 C 1.53036 * 117.50133 * 189.40306 * 16 14 5 19 19 C 1.52802 * 59.96626 * 252.52735 * 18 16 14 20 20 C 1.53154 * 117.74865 * 107.63172 * 19 18 16 21 21 C 1.53170 * 108.88831 * 199.61866 * 20 19 18 22 22 C 1.52938 * 109.45549 * 303.43951 * 21 20 19 23 23 C 1.52949 * 109.82403 * 62.97957 * 22 21 20 24 24 C 1.53153 * 117.75338 * 252.37416 * 19 18 16 25 25 H 1.09003 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46955 * 299.99938 * 1 2 3 27 27 H 1.09003 * 109.47282 * 59.99895 * 1 2 3 28 28 H 1.09005 * 109.47034 * 300.00544 * 3 2 1 29 29 H 1.08998 * 109.47002 * 59.99782 * 3 2 1 30 30 H 1.09003 * 109.46851 * 185.00109 * 4 3 2 31 31 H 1.08997 * 109.46861 * 304.99770 * 4 3 2 32 32 H 0.96996 * 120.00304 * 185.00630 * 9 8 6 33 33 H 1.09000 * 117.50732 * 0.02562 * 18 16 14 34 34 H 1.09004 * 117.49709 * 145.04777 * 18 16 14 35 35 H 1.09003 * 109.56712 * 319.44148 * 20 19 18 36 36 H 1.09000 * 109.56551 * 79.79915 * 20 19 18 37 37 H 1.09001 * 109.47918 * 183.44105 * 21 20 19 38 38 H 1.09004 * 109.47719 * 63.43516 * 21 20 19 39 39 H 1.09002 * 109.41014 * 302.87254 * 22 21 20 40 40 H 1.09003 * 109.41972 * 183.09121 * 22 21 20 41 41 H 1.09002 * 109.47797 * 177.02494 * 23 22 21 42 42 H 1.09005 * 109.47790 * 57.00958 * 23 22 21 43 43 H 1.09006 * 109.56438 * 280.19306 * 24 19 18 44 44 H 1.08990 * 109.56771 * 40.43241 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0968 -0.7987 -1.3370 7 1 3.7697 -1.3159 -2.2268 8 6 4.6405 -1.5147 -0.2775 9 7 5.1695 -0.8779 0.7431 10 14 4.6195 -3.3824 -0.3039 11 1 5.3707 -3.8691 -1.4888 12 1 5.2560 -3.9021 0.9330 13 1 3.2155 -3.8606 -0.3772 14 6 4.2615 1.3336 -2.3218 15 8 4.0775 2.5316 -2.2735 16 6 4.8098 0.7055 -3.5771 17 1 5.3344 -0.2399 -3.4393 18 6 5.3200 1.6445 -4.6725 19 6 4.0075 0.8863 -4.8654 20 6 2.7037 1.6858 -4.7852 21 6 1.5461 0.7206 -4.5127 22 6 1.5105 -0.3525 -5.6018 23 6 2.7968 -1.1789 -5.5580 24 6 3.9946 -0.2746 -5.8643 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 3.9785 2.1764 0.0889 31 1 3.8514 0.5681 0.8409 32 1 5.6134 -1.3751 1.4477 33 1 5.2595 2.7166 -4.4850 34 1 6.1809 1.3170 -5.2555 35 1 2.7707 2.4132 -3.9761 36 1 2.5336 2.2024 -5.7298 37 1 0.6055 1.2714 -4.5144 38 1 1.6883 0.2475 -3.5410 39 1 1.4195 0.1246 -6.5776 40 1 0.6540 -1.0066 -5.4383 41 1 2.7430 -1.9747 -6.3009 42 1 2.9150 -1.6151 -4.5661 43 1 3.9068 0.1169 -6.8778 44 1 4.9184 -0.8456 -5.7722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = -70.732265 kcal Electronic energy + Delta-G solvation = -24308.869347 eV Core-core repulsion = 21033.560867 eV Total energy + Delta-G solvation = -3275.308480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.64356 -37.76145 -36.71358 -34.75870 -33.96811 -31.45242 -30.47378 -29.28869 -27.09931 -25.78370 -24.70600 -23.43376 -22.36009 -21.04578 -20.67418 -19.11326 -18.21121 -16.53441 -16.17969 -15.39181 -15.32081 -15.00833 -14.50968 -14.29056 -14.06842 -13.91450 -13.64412 -13.22137 -13.12370 -12.71637 -12.33068 -11.90745 -11.84182 -11.76633 -11.44770 -11.21980 -11.07598 -10.94255 -10.88555 -10.71400 -10.67515 -10.53349 -10.29082 -10.22860 -9.98140 -9.76681 -9.30340 -9.09576 -8.95528 -8.86346 -8.31731 -7.35224 -6.19207 -3.97503 3.20168 3.27533 3.30364 3.69489 4.19499 4.57006 4.59135 4.75950 5.11948 5.15294 5.18912 5.34974 5.49498 5.59169 5.66400 5.72823 5.77056 5.78633 5.81782 5.90663 6.01475 6.04230 6.10667 6.16284 6.21483 6.23398 6.29019 6.38193 6.39617 6.46396 6.52231 6.56529 6.59457 6.70738 6.80276 6.86756 6.90923 7.02422 7.41253 7.65961 7.93016 8.14082 8.52058 9.21848 9.62891 10.03976 10.80788 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.007921 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.393148 B = 3534.055262 C = 3869.151001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.055 3.945 4 C 0.104 3.896 5 N -0.426 5.426 6 C -0.306 4.306 7 H 0.084 0.916 8 C 0.047 3.953 9 N -0.876 5.876 10 Si 0.917 3.083 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.502 3.498 15 O -0.610 6.610 16 C -0.143 4.143 17 H 0.119 0.881 18 C -0.158 4.158 19 C -0.101 4.101 20 C -0.090 4.090 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.078 4.078 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.268 0.732 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -0.257 -7.601 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C -0.022 4.022 4 C -0.020 4.020 5 N -0.142 5.142 6 C -0.434 4.434 7 H 0.101 0.899 8 C -0.157 4.157 9 N -0.515 5.515 10 Si 0.744 3.256 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.292 3.708 15 O -0.498 6.498 16 C -0.163 4.163 17 H 0.137 0.863 18 C -0.195 4.195 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.115 4.115 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.347 0.072 -7.304 9.052 hybrid contribution -0.220 -0.841 0.164 0.884 sum -5.566 -0.768 -7.140 9.086 Atomic orbital electron populations 1.22628 0.83800 1.01562 0.98650 1.88168 1.16980 1.27659 1.94961 1.23008 0.96873 0.84213 0.98136 1.21718 0.89027 0.99041 0.92219 1.43197 1.55945 1.06103 1.08980 1.19244 1.39920 0.80894 1.03371 0.89881 1.25359 0.94963 0.99791 0.95613 1.69560 1.35214 1.35976 1.10741 0.86160 0.78615 0.83305 0.77517 1.20043 1.21109 1.19783 1.19481 0.80291 0.85726 0.85292 1.90466 1.59511 1.15517 1.84291 1.22217 1.03862 1.01387 0.88884 0.86275 1.22967 0.96348 0.98781 1.01422 1.21353 0.92768 0.98829 0.97202 1.21237 0.92009 0.97516 1.01943 1.21486 0.97494 0.96803 0.99572 1.21448 0.97346 0.97537 0.98734 1.21523 0.94532 0.97377 1.02126 1.21117 0.98263 0.94845 0.97268 0.90577 0.95340 0.95159 0.94551 0.94699 0.91703 0.85330 0.92108 0.88322 0.89318 0.89572 0.92726 0.93003 0.91192 0.92756 0.92749 0.92660 0.91166 0.92134 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.85 10.18 -35.23 -0.36 -8.21 16 3 C 0.06 1.19 6.28 37.16 0.23 1.42 16 4 C 0.10 2.52 5.39 -4.04 -0.02 2.50 16 5 N -0.43 -10.71 2.50 -114.81 -0.29 -10.99 16 6 C -0.31 -7.77 7.65 -14.93 -0.11 -7.88 16 7 H 0.08 2.07 7.43 -52.49 -0.39 1.68 16 8 C 0.05 1.19 5.25 -17.47 -0.09 1.09 16 9 N -0.88 -23.28 10.89 55.50 0.60 -22.68 16 10 Si 0.92 20.11 29.56 -169.99 -5.03 15.08 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 C 0.50 12.18 6.60 -10.99 -0.07 12.11 16 15 O -0.61 -15.74 14.13 5.54 0.08 -15.66 16 16 C -0.14 -2.95 4.95 -91.84 -0.45 -3.40 16 17 H 0.12 2.53 7.24 -51.93 -0.38 2.15 16 18 C -0.16 -2.80 9.50 -26.81 -0.25 -3.05 16 19 C -0.10 -1.74 1.97 -154.53 -0.31 -2.05 16 20 C -0.09 -1.56 5.29 -26.56 -0.14 -1.70 16 21 C -0.12 -1.91 5.93 -26.68 -0.16 -2.07 16 22 C -0.11 -1.59 5.82 -26.79 -0.16 -1.74 16 23 C -0.12 -1.70 5.93 -26.66 -0.16 -1.86 16 24 C -0.08 -1.13 5.67 -26.56 -0.15 -1.28 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.59 7.49 -51.93 -0.39 1.20 16 31 H 0.13 3.38 5.21 -51.93 -0.27 3.11 16 32 H 0.27 6.81 8.32 -40.82 -0.34 6.48 16 33 H 0.10 1.86 7.70 -51.93 -0.40 1.46 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.77 5.70 -51.93 -0.30 1.47 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -28.42 347.01 -8.09 -36.51 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.60 Total: 7.01 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.73 Total: -6.29 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.32 Total: -33.67 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.28 Total: -23.87 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.42 -8.09 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.226 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds