Wall clock time and date at job start Tue Mar 31 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00410 * 2 1 4 4 C 1.53001 * 109.47383 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47199 * 64.99892 * 4 3 2 6 6 C 1.37097 * 120.00358 * 270.00276 * 5 4 3 7 7 H 1.07994 * 120.00435 * 138.99024 * 6 5 4 8 8 C 1.38955 * 119.99411 * 318.99391 * 6 5 4 9 9 N 1.31406 * 120.00229 * 352.68213 * 8 6 5 10 10 Si 1.86804 * 119.99720 * 172.68762 * 8 6 5 11 11 H 1.48503 * 109.46913 * 59.99841 * 10 8 6 12 12 H 1.48497 * 109.47027 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46888 * 299.99911 * 10 8 6 14 14 C 1.34782 * 119.99988 * 90.00021 * 5 4 3 15 15 O 1.21296 * 119.99765 * 355.55061 * 14 5 4 16 16 C 1.50695 * 119.99980 * 175.54740 * 14 5 4 17 17 H 1.08994 * 115.55190 * 335.15328 * 16 14 5 18 18 C 1.53036 * 117.50133 * 189.40306 * 16 14 5 19 19 C 1.52802 * 59.96626 * 252.52735 * 18 16 14 20 20 C 1.53154 * 117.74865 * 107.63172 * 19 18 16 21 21 C 1.53170 * 108.88831 * 199.61866 * 20 19 18 22 22 C 1.52938 * 109.45549 * 303.43951 * 21 20 19 23 23 C 1.52949 * 109.82403 * 62.97957 * 22 21 20 24 24 C 1.53153 * 117.75338 * 252.37416 * 19 18 16 25 25 H 1.09003 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46955 * 299.99938 * 1 2 3 27 27 H 1.09003 * 109.47282 * 59.99895 * 1 2 3 28 28 H 1.09005 * 109.47034 * 300.00544 * 3 2 1 29 29 H 1.08998 * 109.47002 * 59.99782 * 3 2 1 30 30 H 1.09003 * 109.46851 * 185.00109 * 4 3 2 31 31 H 1.08997 * 109.46861 * 304.99770 * 4 3 2 32 32 H 0.96996 * 120.00304 * 185.00630 * 9 8 6 33 33 H 1.09000 * 117.50732 * 0.02562 * 18 16 14 34 34 H 1.09004 * 117.49709 * 145.04777 * 18 16 14 35 35 H 1.09003 * 109.56712 * 319.44148 * 20 19 18 36 36 H 1.09000 * 109.56551 * 79.79915 * 20 19 18 37 37 H 1.09001 * 109.47918 * 183.44105 * 21 20 19 38 38 H 1.09004 * 109.47719 * 63.43516 * 21 20 19 39 39 H 1.09002 * 109.41014 * 302.87254 * 22 21 20 40 40 H 1.09003 * 109.41972 * 183.09121 * 22 21 20 41 41 H 1.09002 * 109.47797 * 177.02494 * 23 22 21 42 42 H 1.09005 * 109.47790 * 57.00958 * 23 22 21 43 43 H 1.09006 * 109.56438 * 280.19306 * 24 19 18 44 44 H 1.08990 * 109.56771 * 40.43241 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0968 -0.7987 -1.3370 7 1 3.7697 -1.3159 -2.2268 8 6 4.6405 -1.5147 -0.2775 9 7 5.1695 -0.8779 0.7431 10 14 4.6195 -3.3824 -0.3039 11 1 5.3707 -3.8691 -1.4888 12 1 5.2560 -3.9021 0.9330 13 1 3.2155 -3.8606 -0.3772 14 6 4.2615 1.3336 -2.3218 15 8 4.0775 2.5316 -2.2735 16 6 4.8098 0.7055 -3.5771 17 1 5.3344 -0.2399 -3.4393 18 6 5.3200 1.6445 -4.6725 19 6 4.0075 0.8863 -4.8654 20 6 2.7037 1.6858 -4.7852 21 6 1.5461 0.7206 -4.5127 22 6 1.5105 -0.3525 -5.6018 23 6 2.7968 -1.1789 -5.5580 24 6 3.9946 -0.2746 -5.8643 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 3.9785 2.1764 0.0889 31 1 3.8514 0.5681 0.8409 32 1 5.6134 -1.3751 1.4477 33 1 5.2595 2.7166 -4.4850 34 1 6.1809 1.3170 -5.2555 35 1 2.7707 2.4132 -3.9761 36 1 2.5336 2.2024 -5.7298 37 1 0.6055 1.2714 -4.5144 38 1 1.6883 0.2475 -3.5410 39 1 1.4195 0.1246 -6.5776 40 1 0.6540 -1.0066 -5.4383 41 1 2.7430 -1.9747 -6.3009 42 1 2.9150 -1.6151 -4.5661 43 1 3.9068 0.1169 -6.8778 44 1 4.9184 -0.8456 -5.7722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:41 Heat of formation + Delta-G solvation = -85.807477 kcal Electronic energy + Delta-G solvation = -24309.523057 eV Core-core repulsion = 21033.560867 eV Total energy + Delta-G solvation = -3275.962190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25836 -39.39487 -38.35951 -36.57935 -35.44939 -33.41369 -31.72653 -31.06890 -28.42329 -27.30201 -26.60483 -25.10138 -23.62312 -22.78244 -21.92899 -20.91522 -19.73182 -18.28416 -17.97530 -17.09533 -17.00122 -16.41497 -16.23018 -16.03204 -15.63316 -15.26602 -15.18646 -14.80887 -14.54549 -14.18288 -13.65805 -13.56343 -13.37434 -13.26406 -13.05426 -12.87834 -12.73592 -12.57078 -12.49007 -12.38161 -12.07519 -12.00283 -11.88952 -11.77691 -11.51619 -11.09359 -10.86946 -10.74690 -10.52604 -10.44676 -10.15547 -9.31864 -8.14154 -5.97968 1.44278 1.49397 1.56330 1.94422 2.36943 2.93187 3.02040 3.06539 3.29478 3.81235 3.87907 4.03176 4.07476 4.24694 4.25928 4.28389 4.40712 4.49791 4.52205 4.53797 4.57467 4.62783 4.66225 4.69425 4.78226 4.85073 4.87989 4.95750 5.00281 5.02626 5.11133 5.17140 5.29099 5.34292 5.36720 5.41467 5.44295 5.59899 5.64410 5.68878 6.12324 6.43820 6.54353 7.24754 7.70347 8.11356 8.86022 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.007921 C = 0.007235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.393148 B = 3534.055262 C = 3869.151001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.069 3.931 4 C 0.101 3.899 5 N -0.438 5.438 6 C -0.310 4.310 7 H 0.082 0.918 8 C 0.004 3.996 9 N -0.906 5.906 10 Si 0.978 3.022 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.494 3.506 15 O -0.635 6.635 16 C -0.174 4.174 17 H 0.110 0.890 18 C -0.145 4.145 19 C -0.081 4.081 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.075 4.075 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.090 0.910 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 -1.587 -10.013 11.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C -0.008 4.008 4 C -0.023 4.023 5 N -0.155 5.155 6 C -0.438 4.438 7 H 0.100 0.900 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.802 3.198 11 H -0.187 1.187 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.285 3.715 15 O -0.525 6.525 16 C -0.195 4.195 17 H 0.128 0.872 18 C -0.182 4.182 19 C -0.082 4.082 20 C -0.128 4.128 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.156 4.156 24 C -0.112 4.112 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.109 0.891 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.267 -1.258 -9.724 11.637 hybrid contribution 0.011 -0.342 0.934 0.995 sum -6.256 -1.600 -8.790 10.907 Atomic orbital electron populations 1.22861 0.80988 1.03160 1.00039 1.88095 1.20109 1.27609 1.95215 1.22746 0.94884 0.84522 0.98680 1.21628 0.91250 0.97670 0.91767 1.43382 1.56395 1.06344 1.09334 1.19361 1.39845 0.81108 1.03487 0.89999 1.26105 0.94562 1.03816 0.95131 1.69696 1.36086 1.37411 1.11327 0.85225 0.78523 0.78266 0.77783 1.18729 1.21051 1.19741 1.20093 0.79654 0.85543 0.86188 1.90430 1.60581 1.16567 1.84902 1.22101 1.06785 1.01785 0.88807 0.87232 1.23051 0.98027 0.97489 0.99623 1.21564 0.92306 0.99308 0.95010 1.21225 0.92634 0.97158 1.01786 1.21427 0.97550 0.97358 0.98604 1.21432 0.97620 0.96802 0.98647 1.21535 0.94613 0.98112 1.01326 1.21191 0.98759 0.93653 0.97574 0.88933 0.93148 0.94451 0.95701 0.92190 0.93177 0.87129 0.92188 0.89838 0.86195 0.93397 0.90010 0.91962 0.95295 0.90259 0.91693 0.89783 0.94188 0.89124 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -17.28 10.18 -148.98 -1.52 -18.80 16 3 C 0.07 3.06 6.28 71.98 0.45 3.51 16 4 C 0.10 5.15 5.39 86.38 0.47 5.61 16 5 N -0.44 -23.01 2.50 -635.53 -1.59 -24.60 16 6 C -0.31 -16.20 7.65 84.04 0.64 -15.56 16 7 H 0.08 4.21 7.43 -2.91 -0.02 4.19 16 8 C 0.00 0.23 5.25 84.93 0.45 0.68 16 9 N -0.91 -49.52 10.89 21.66 0.24 -49.28 16 10 Si 0.98 41.42 29.56 68.60 2.03 43.45 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 14 C 0.49 24.99 6.60 87.65 0.58 25.57 16 15 O -0.64 -34.39 14.13 -3.08 -0.04 -34.44 16 16 C -0.17 -7.29 4.95 -11.58 -0.06 -7.35 16 17 H 0.11 4.75 7.24 -2.39 -0.02 4.73 16 18 C -0.14 -4.99 9.50 30.54 0.29 -4.70 16 19 C -0.08 -2.70 1.97 -52.20 -0.10 -2.80 16 20 C -0.09 -3.08 5.29 30.70 0.16 -2.92 16 21 C -0.11 -3.58 5.93 30.63 0.18 -3.40 16 22 C -0.11 -2.68 5.82 30.56 0.18 -2.51 16 23 C -0.12 -3.07 5.93 30.64 0.18 -2.89 16 24 C -0.07 -1.93 5.67 30.71 0.17 -1.76 16 25 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.62 7.49 -2.39 -0.02 2.60 16 31 H 0.11 6.10 5.21 -2.39 -0.01 6.09 16 32 H 0.27 13.96 8.32 -92.71 -0.77 13.19 16 33 H 0.08 3.15 7.70 -2.39 -0.02 3.13 16 34 H 0.12 3.35 8.14 -2.38 -0.02 3.33 16 35 H 0.05 2.01 5.70 -2.39 -0.01 2.00 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -64.23 347.01 4.91 -59.32 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.96 Total: 30.78 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 4.84 Total: -6.43 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.35 Total: -73.88 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.56 Total: -53.23 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -64.23 4.91 -59.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.491 kcal (2) G-P(sol) polarization free energy of solvation -64.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds