Wall clock time and date at job start Tue Mar 31 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99673 * 2 1 4 4 C 1.53011 * 109.46836 * 184.92884 * 3 2 1 5 5 C 1.50699 * 110.43161 * 301.89901 * 4 3 2 6 6 O 1.21280 * 120.00308 * 246.47969 * 5 4 3 7 7 N 1.34777 * 119.99668 * 66.48649 * 5 4 3 8 8 C 1.46509 * 119.99601 * 175.27624 * 7 5 4 9 9 C 1.53000 * 109.47010 * 184.91528 * 8 7 5 10 10 C 1.50697 * 115.54842 * 81.31600 * 9 8 7 11 11 H 1.08006 * 120.00279 * 219.47491 * 10 9 8 12 12 C 1.37878 * 120.00151 * 39.48440 * 10 9 8 13 13 N 1.31510 * 119.99817 * 14.01766 * 12 10 9 14 14 Si 1.86797 * 120.00015 * 194.02684 * 12 10 9 15 15 H 1.48503 * 109.47490 * 4.99633 * 14 12 10 16 16 H 1.48505 * 109.47319 * 124.99965 * 14 12 10 17 17 H 1.48503 * 109.47249 * 244.99893 * 14 12 10 18 18 C 1.52999 * 117.49854 * 295.64914 * 9 8 7 19 19 C 1.52999 * 60.03391 * 252.49783 * 18 9 8 20 20 C 1.54886 * 110.48356 * 64.44391 * 4 3 2 21 21 C 1.55238 * 102.58718 * 156.67929 * 20 4 3 22 22 C 1.54266 * 104.23030 * 322.08030 * 21 20 4 23 23 C 1.53879 * 106.59821 * 23.61091 * 22 21 20 24 24 H 1.08999 * 109.47043 * 304.93050 * 1 2 3 25 25 H 1.09000 * 109.47286 * 64.93177 * 1 2 3 26 26 H 1.09001 * 109.46929 * 184.93469 * 1 2 3 27 27 H 1.08999 * 109.47727 * 64.92830 * 3 2 1 28 28 H 1.08999 * 109.47385 * 304.92570 * 3 2 1 29 29 H 0.96995 * 120.00737 * 355.27408 * 7 5 4 30 30 H 1.09000 * 109.46931 * 64.91877 * 8 7 5 31 31 H 1.08997 * 109.46837 * 304.91531 * 8 7 5 32 32 H 0.97000 * 119.99767 * 184.99102 * 13 12 10 33 33 H 1.09004 * 117.50002 * 0.02562 * 18 9 8 34 34 H 1.09004 * 117.49949 * 144.99415 * 18 9 8 35 35 H 1.09001 * 117.49740 * 107.49688 * 19 18 9 36 36 H 1.09000 * 117.49841 * 252.52405 * 19 18 9 37 37 H 1.09007 * 110.75444 * 275.06301 * 20 4 3 38 38 H 1.08994 * 110.76400 * 38.43566 * 20 4 3 39 39 H 1.08998 * 110.47050 * 203.39031 * 21 20 4 40 40 H 1.09005 * 110.47341 * 80.76784 * 21 20 4 41 41 H 1.08998 * 110.03614 * 264.32679 * 22 21 20 42 42 H 1.09003 * 110.03611 * 142.89163 * 22 21 20 43 43 H 1.08996 * 110.03341 * 240.71799 * 23 22 21 44 44 H 1.08999 * 110.03193 * 119.28646 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5306 1.1868 -0.1239 5 6 4.0877 0.3606 1.0066 6 8 4.8041 0.8759 1.8385 7 7 3.7900 -0.9510 1.0929 8 6 4.4130 -1.7768 2.1304 9 6 4.0037 -3.2378 1.9335 10 6 4.7851 -3.9971 0.8925 11 1 4.2801 -4.6937 0.2396 12 6 6.1449 -3.8027 0.7735 13 7 6.8059 -3.1800 1.7247 14 14 7.0483 -4.4237 -0.7390 15 1 6.0688 -4.9765 -1.7086 16 1 7.7889 -3.3012 -1.3690 17 1 8.0057 -5.4873 -0.3419 18 6 2.5226 -3.5847 2.0973 19 6 3.5303 -4.0119 3.1664 20 6 3.9163 0.5669 -1.4899 21 6 5.3700 1.0725 -1.6925 22 6 5.3511 2.5126 -1.1397 23 6 4.1815 2.5853 -0.1424 24 1 -0.3633 0.5884 0.8425 25 1 -0.3634 0.4354 -0.9309 26 1 -0.3633 -1.0239 0.0884 27 1 1.7601 1.8146 0.9308 28 1 1.6204 1.8767 -0.8426 29 1 3.1632 -1.3483 0.4683 30 1 4.0838 -1.4364 3.1121 31 1 5.4974 -1.6907 2.0607 32 1 7.7477 -2.9790 1.6092 33 1 1.8397 -2.7719 2.3449 34 1 2.1133 -4.3621 1.4521 35 1 3.5105 -3.4802 4.1177 36 1 3.7844 -5.0702 3.2243 37 1 3.8865 -0.5218 -1.4423 38 1 3.2643 0.9379 -2.2806 39 1 5.6291 1.0737 -2.7512 40 1 6.0701 0.4564 -1.1281 41 1 5.1938 3.2223 -1.9519 42 1 6.2901 2.7295 -0.6303 43 1 3.4566 3.3302 -0.4706 44 1 4.5529 2.8374 0.8509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457797890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:07 Heat of formation + Delta-G solvation = -73.106301 kcal Electronic energy + Delta-G solvation = -23943.214850 eV Core-core repulsion = 20667.803424 eV Total energy + Delta-G solvation = -3275.411426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.03704 -37.60212 -36.94936 -36.10845 -32.95912 -32.18828 -30.66119 -28.51423 -26.70701 -26.05732 -25.19818 -24.13548 -21.76385 -21.09948 -20.19964 -19.16580 -18.54211 -16.97334 -16.18427 -15.92236 -15.81644 -15.29978 -15.04704 -14.69024 -14.39168 -13.91177 -13.82489 -13.36719 -13.02312 -12.97225 -12.61172 -12.18264 -11.68518 -11.49211 -11.42374 -11.18802 -11.10804 -10.93691 -10.86972 -10.79359 -10.69544 -10.53950 -10.45265 -10.27714 -10.21645 -9.65696 -9.48076 -9.17317 -8.87142 -8.72652 -8.12433 -7.76287 -6.06793 -4.10423 3.26335 3.36068 3.39096 3.39577 3.76263 4.09978 4.37928 4.71288 4.79471 4.94420 5.03187 5.20011 5.26765 5.38008 5.39719 5.44674 5.55471 5.59259 5.66261 5.71206 5.74936 5.85380 5.94075 6.07653 6.12686 6.14069 6.22428 6.39773 6.43419 6.45191 6.61024 6.62018 6.69031 6.76853 7.00066 7.14429 7.15633 7.34520 7.64213 7.68458 8.02078 8.39403 8.63007 8.86737 9.21458 9.49886 10.95308 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007388 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.898400 B = 3788.932630 C = 4735.924968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.080 3.920 4 C -0.084 4.084 5 C 0.522 3.478 6 O -0.561 6.561 7 N -0.691 5.691 8 C 0.142 3.858 9 C 0.041 3.959 10 C -0.488 4.488 11 H 0.061 0.939 12 C 0.072 3.928 13 N -0.868 5.868 14 Si 0.885 3.115 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.284 1.284 18 C -0.206 4.206 19 C -0.194 4.194 20 C -0.106 4.106 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.105 4.105 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.402 0.598 30 H 0.026 0.974 31 H 0.121 0.879 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 9.857 -6.560 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.003 3.997 4 C -0.087 4.087 5 C 0.306 3.694 6 O -0.441 6.441 7 N -0.339 5.339 8 C 0.020 3.980 9 C 0.040 3.960 10 C -0.525 4.525 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.505 5.505 14 Si 0.712 3.288 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.244 4.244 19 C -0.233 4.233 20 C -0.143 4.143 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.143 4.143 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.238 0.762 30 H 0.044 0.956 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.540 10.014 -5.883 14.416 hybrid contribution -0.125 -0.336 -0.961 1.026 sum -8.665 9.678 -6.844 14.683 Atomic orbital electron populations 1.22714 0.81049 1.02926 0.99510 1.87883 1.19585 1.27304 1.95321 1.22478 0.91734 0.85169 1.00359 1.21698 0.93658 0.97125 0.96260 1.19854 0.80977 0.82920 0.85641 1.90608 1.39257 1.71864 1.42351 1.46026 1.45137 1.08024 1.34734 1.21305 1.02070 0.87795 0.86872 1.19161 0.89891 0.91749 0.95190 1.20546 0.91777 1.23864 1.16292 0.92053 1.24931 0.97162 0.95370 0.95687 1.69880 1.09306 1.40868 1.30461 0.86653 0.79868 0.78662 0.83587 1.19615 1.20767 1.21002 1.22833 0.94305 1.02712 1.04537 1.22948 1.06223 1.00604 0.93495 1.22588 0.96233 1.01479 0.94037 1.22454 0.97187 0.96241 1.00709 1.22061 0.98668 0.96939 0.97932 1.22050 0.96988 0.93529 1.01726 0.94317 0.94316 0.89431 0.93059 0.92560 0.76242 0.95557 0.86132 0.92701 0.91291 0.90652 0.91649 0.90259 0.90091 0.91030 0.91652 0.91085 0.92137 0.91649 0.91716 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.39 8.34 -35.23 -0.29 -5.68 16 3 C 0.08 1.04 4.70 37.16 0.17 1.22 16 4 C -0.08 -1.30 0.59 -154.00 -0.09 -1.39 16 5 C 0.52 10.73 6.27 -10.99 -0.07 10.66 16 6 O -0.56 -13.46 15.43 5.56 0.09 -13.38 16 7 N -0.69 -14.85 4.89 -60.29 -0.29 -15.14 16 8 C 0.14 3.51 5.37 -4.04 -0.02 3.49 16 9 C 0.04 1.00 1.73 -155.62 -0.27 0.73 16 10 C -0.49 -12.97 9.00 -34.44 -0.31 -13.28 16 11 H 0.06 1.62 7.85 -52.48 -0.41 1.21 16 12 C 0.07 1.93 5.17 -17.82 -0.09 1.84 16 13 N -0.87 -24.39 10.92 55.43 0.61 -23.78 16 14 Si 0.89 20.78 29.56 -169.99 -5.03 15.75 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.21 -4.39 9.79 -26.73 -0.26 -4.66 16 19 C -0.19 -4.45 9.89 -26.69 -0.26 -4.71 16 20 C -0.11 -1.54 5.60 -24.55 -0.14 -1.68 16 21 C -0.13 -1.89 6.62 -24.88 -0.16 -2.05 16 22 C -0.12 -1.57 6.80 -25.61 -0.17 -1.74 16 23 C -0.11 -1.46 5.80 -25.61 -0.15 -1.61 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.40 8.19 6.14 -40.82 -0.25 7.94 16 30 H 0.03 0.66 7.94 -51.93 -0.41 0.25 16 31 H 0.12 3.40 5.33 -51.93 -0.28 3.13 16 32 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.06 1.43 8.08 -51.93 -0.42 1.01 16 36 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.08 1.33 7.24 -51.92 -0.38 0.96 16 38 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.71 7.84 -51.93 -0.41 0.31 16 44 H 0.09 1.40 6.79 -51.93 -0.35 1.05 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -29.92 350.05 -7.89 -37.81 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -7.53 Total: 10.86 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.72 Total: -11.72 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.31 Total: -38.93 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.21 Total: -19.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.92 -7.89 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457797890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.293 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds