Wall clock time and date at job start Tue Mar 31 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99673 * 2 1 4 4 C 1.53011 * 109.46836 * 184.92884 * 3 2 1 5 5 C 1.50699 * 110.43161 * 301.89901 * 4 3 2 6 6 O 1.21280 * 120.00308 * 246.47969 * 5 4 3 7 7 N 1.34777 * 119.99668 * 66.48649 * 5 4 3 8 8 C 1.46509 * 119.99601 * 175.27624 * 7 5 4 9 9 C 1.53000 * 109.47010 * 184.91528 * 8 7 5 10 10 C 1.50697 * 115.54842 * 81.31600 * 9 8 7 11 11 H 1.08006 * 120.00279 * 219.47491 * 10 9 8 12 12 C 1.37878 * 120.00151 * 39.48440 * 10 9 8 13 13 N 1.31510 * 119.99817 * 14.01766 * 12 10 9 14 14 Si 1.86797 * 120.00015 * 194.02684 * 12 10 9 15 15 H 1.48503 * 109.47490 * 4.99633 * 14 12 10 16 16 H 1.48505 * 109.47319 * 124.99965 * 14 12 10 17 17 H 1.48503 * 109.47249 * 244.99893 * 14 12 10 18 18 C 1.52999 * 117.49854 * 295.64914 * 9 8 7 19 19 C 1.52999 * 60.03391 * 252.49783 * 18 9 8 20 20 C 1.54886 * 110.48356 * 64.44391 * 4 3 2 21 21 C 1.55238 * 102.58718 * 156.67929 * 20 4 3 22 22 C 1.54266 * 104.23030 * 322.08030 * 21 20 4 23 23 C 1.53879 * 106.59821 * 23.61091 * 22 21 20 24 24 H 1.08999 * 109.47043 * 304.93050 * 1 2 3 25 25 H 1.09000 * 109.47286 * 64.93177 * 1 2 3 26 26 H 1.09001 * 109.46929 * 184.93469 * 1 2 3 27 27 H 1.08999 * 109.47727 * 64.92830 * 3 2 1 28 28 H 1.08999 * 109.47385 * 304.92570 * 3 2 1 29 29 H 0.96995 * 120.00737 * 355.27408 * 7 5 4 30 30 H 1.09000 * 109.46931 * 64.91877 * 8 7 5 31 31 H 1.08997 * 109.46837 * 304.91531 * 8 7 5 32 32 H 0.97000 * 119.99767 * 184.99102 * 13 12 10 33 33 H 1.09004 * 117.50002 * 0.02562 * 18 9 8 34 34 H 1.09004 * 117.49949 * 144.99415 * 18 9 8 35 35 H 1.09001 * 117.49740 * 107.49688 * 19 18 9 36 36 H 1.09000 * 117.49841 * 252.52405 * 19 18 9 37 37 H 1.09007 * 110.75444 * 275.06301 * 20 4 3 38 38 H 1.08994 * 110.76400 * 38.43566 * 20 4 3 39 39 H 1.08998 * 110.47050 * 203.39031 * 21 20 4 40 40 H 1.09005 * 110.47341 * 80.76784 * 21 20 4 41 41 H 1.08998 * 110.03614 * 264.32679 * 22 21 20 42 42 H 1.09003 * 110.03611 * 142.89163 * 22 21 20 43 43 H 1.08996 * 110.03341 * 240.71799 * 23 22 21 44 44 H 1.08999 * 110.03193 * 119.28646 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5306 1.1868 -0.1239 5 6 4.0877 0.3606 1.0066 6 8 4.8041 0.8759 1.8385 7 7 3.7900 -0.9510 1.0929 8 6 4.4130 -1.7768 2.1304 9 6 4.0037 -3.2378 1.9335 10 6 4.7851 -3.9971 0.8925 11 1 4.2801 -4.6937 0.2396 12 6 6.1449 -3.8027 0.7735 13 7 6.8059 -3.1800 1.7247 14 14 7.0483 -4.4237 -0.7390 15 1 6.0688 -4.9765 -1.7086 16 1 7.7889 -3.3012 -1.3690 17 1 8.0057 -5.4873 -0.3419 18 6 2.5226 -3.5847 2.0973 19 6 3.5303 -4.0119 3.1664 20 6 3.9163 0.5669 -1.4899 21 6 5.3700 1.0725 -1.6925 22 6 5.3511 2.5126 -1.1397 23 6 4.1815 2.5853 -0.1424 24 1 -0.3633 0.5884 0.8425 25 1 -0.3634 0.4354 -0.9309 26 1 -0.3633 -1.0239 0.0884 27 1 1.7601 1.8146 0.9308 28 1 1.6204 1.8767 -0.8426 29 1 3.1632 -1.3483 0.4683 30 1 4.0838 -1.4364 3.1121 31 1 5.4974 -1.6907 2.0607 32 1 7.7477 -2.9790 1.6092 33 1 1.8397 -2.7719 2.3449 34 1 2.1133 -4.3621 1.4521 35 1 3.5105 -3.4802 4.1177 36 1 3.7844 -5.0702 3.2243 37 1 3.8865 -0.5218 -1.4423 38 1 3.2643 0.9379 -2.2806 39 1 5.6291 1.0737 -2.7512 40 1 6.0701 0.4564 -1.1281 41 1 5.1938 3.2223 -1.9519 42 1 6.2901 2.7295 -0.6303 43 1 3.4566 3.3302 -0.4706 44 1 4.5529 2.8374 0.8509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457797890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:06 Heat of formation + Delta-G solvation = -91.253027 kcal Electronic energy + Delta-G solvation = -23944.001751 eV Core-core repulsion = 20667.803424 eV Total energy + Delta-G solvation = -3276.198327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44145 -39.03124 -38.39189 -37.54642 -34.72298 -34.23881 -31.79904 -29.65562 -28.04970 -27.53795 -27.06383 -25.17348 -23.32743 -22.81062 -21.36229 -21.06683 -20.11200 -18.45138 -17.74858 -17.10823 -17.00222 -16.74657 -16.48598 -16.33075 -15.90816 -15.55029 -15.31690 -14.82374 -14.49345 -14.22873 -14.00680 -13.64807 -13.43051 -13.21072 -12.86630 -12.65989 -12.42258 -12.33346 -12.30586 -12.18015 -12.09390 -11.99577 -11.95226 -11.66031 -11.42417 -11.28011 -11.16114 -10.67097 -10.64113 -10.46368 -10.04076 -9.63974 -8.12222 -6.21217 1.37754 1.41951 1.52215 1.83298 2.40597 2.48507 2.82340 3.00502 3.57737 3.60179 3.66322 3.89575 4.09951 4.25208 4.25634 4.32921 4.52497 4.53504 4.55766 4.58256 4.62282 4.66813 4.70958 4.75840 4.81938 4.84762 4.93453 4.97270 4.98615 5.05492 5.08462 5.15250 5.25832 5.30169 5.33261 5.50192 5.53371 5.58348 5.86281 5.96656 6.27280 6.35689 6.77988 6.96886 7.41241 7.56146 8.88662 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007388 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.898400 B = 3788.932630 C = 4735.924968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.082 3.918 4 C -0.081 4.081 5 C 0.513 3.487 6 O -0.605 6.605 7 N -0.687 5.687 8 C 0.154 3.846 9 C 0.011 3.989 10 C -0.497 4.497 11 H 0.061 0.939 12 C 0.026 3.974 13 N -0.899 5.899 14 Si 0.943 3.057 15 H -0.260 1.260 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.172 4.172 19 C -0.199 4.199 20 C -0.100 4.100 21 C -0.132 4.132 22 C -0.115 4.115 23 C -0.103 4.103 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.408 0.592 30 H 0.012 0.988 31 H 0.084 0.916 32 H 0.259 0.741 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.024 0.976 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.106 0.894 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 10.828 -9.048 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.330 6.330 3 C 0.006 3.994 4 C -0.084 4.084 5 C 0.300 3.700 6 O -0.488 6.488 7 N -0.336 5.336 8 C 0.030 3.970 9 C 0.011 3.989 10 C -0.534 4.534 11 H 0.079 0.921 12 C -0.174 4.174 13 N -0.537 5.537 14 Si 0.769 3.231 15 H -0.184 1.184 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.209 4.209 19 C -0.238 4.238 20 C -0.138 4.138 21 C -0.170 4.170 22 C -0.153 4.153 23 C -0.141 4.141 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.245 0.755 30 H 0.030 0.970 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.043 0.957 41 H 0.117 0.883 42 H 0.066 0.934 43 H 0.125 0.875 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.845 10.972 -8.390 17.561 hybrid contribution 0.561 -0.651 -0.128 0.869 sum -10.284 10.320 -8.518 16.877 Atomic orbital electron populations 1.22891 0.79192 1.03525 1.01034 1.87835 1.21656 1.27958 1.95592 1.22518 0.89563 0.85367 1.01977 1.21761 0.95658 0.96845 0.94178 1.20919 0.79952 0.82716 0.86415 1.90579 1.41111 1.72607 1.44476 1.45945 1.45148 1.08356 1.34166 1.20864 1.00052 0.88856 0.87212 1.19171 0.92365 0.91385 0.96015 1.20791 0.92102 1.23836 1.16668 0.92131 1.25628 0.98044 0.95750 0.97997 1.70027 1.09234 1.42379 1.32091 0.85733 0.78795 0.77908 0.80659 1.18368 1.21042 1.20898 1.22813 0.92607 1.02793 1.02726 1.22951 1.06976 1.00178 0.93651 1.22608 0.96657 1.00022 0.94472 1.22473 0.96472 0.96489 1.01566 1.22081 0.97759 0.96692 0.98751 1.22092 0.98041 0.93454 1.00535 0.93685 0.91986 0.89268 0.93328 0.88511 0.75456 0.97001 0.89878 0.93148 0.89602 0.89408 0.91152 0.90655 0.92547 0.87052 0.89152 0.95741 0.88320 0.93389 0.87540 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -10.55 8.34 -148.98 -1.24 -11.79 16 3 C 0.08 1.90 4.70 71.99 0.34 2.24 16 4 C -0.08 -2.40 0.59 -51.85 -0.03 -2.43 16 5 C 0.51 21.62 6.27 87.66 0.55 22.17 16 6 O -0.60 -30.55 15.43 -3.03 -0.05 -30.60 16 7 N -0.69 -30.25 4.89 -463.05 -2.26 -32.51 16 8 C 0.15 7.92 5.37 86.38 0.46 8.38 16 9 C 0.01 0.57 1.73 -52.90 -0.09 0.47 16 10 C -0.50 -26.68 9.00 25.60 0.23 -26.45 16 11 H 0.06 3.19 7.85 -2.91 -0.02 3.16 16 12 C 0.03 1.42 5.17 84.66 0.44 1.86 16 13 N -0.90 -52.58 10.92 21.45 0.23 -52.34 16 14 Si 0.94 43.34 29.56 68.60 2.03 45.37 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 C -0.17 -7.10 9.79 30.59 0.30 -6.80 16 19 C -0.20 -9.11 9.89 30.62 0.30 -8.81 16 20 C -0.10 -2.70 5.60 32.01 0.18 -2.52 16 21 C -0.13 -3.75 6.62 31.79 0.21 -3.54 16 22 C -0.12 -2.84 6.80 31.32 0.21 -2.63 16 23 C -0.10 -2.67 5.80 31.32 0.18 -2.49 16 24 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.41 16.70 6.14 -92.71 -0.57 16.13 16 30 H 0.01 0.62 7.94 -2.39 -0.02 0.60 16 31 H 0.08 4.98 5.33 -2.39 -0.01 4.97 16 32 H 0.26 14.65 8.32 -92.71 -0.77 13.88 16 33 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 34 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.07 3.11 8.08 -2.39 -0.02 3.09 16 36 H 0.07 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.06 1.81 7.24 -2.38 -0.02 1.79 16 38 H 0.11 2.16 8.05 -2.39 -0.02 2.14 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.11 1.87 7.84 -2.39 -0.02 1.85 16 44 H 0.06 1.86 6.79 -2.39 -0.02 1.85 16 Total: -1.00 -68.40 350.05 3.64 -64.75 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.40 Total: 35.90 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 4.53 Total: -18.78 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.03 Total: -84.85 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.29 Total: -42.39 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.40 3.64 -64.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457797890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.500 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds