Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00440 * 2 1 4 4 N 1.46497 * 109.47185 * 231.19483 * 3 2 1 5 5 C 1.46500 * 119.99907 * 288.82416 * 4 3 2 6 6 C 1.50707 * 109.46838 * 90.00329 * 5 4 3 7 7 H 1.07997 * 119.99752 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99896 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99895 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47248 * 90.00265 * 10 8 6 12 12 H 1.48510 * 109.46957 * 209.99590 * 10 8 6 13 13 H 1.48498 * 109.47414 * 329.99851 * 10 8 6 14 14 C 1.34780 * 120.00178 * 108.82579 * 4 3 2 15 15 O 1.21276 * 120.00277 * 186.26029 * 14 4 3 16 16 C 1.50696 * 119.99505 * 6.26366 * 14 4 3 17 17 C 1.53001 * 110.43902 * 68.17856 * 16 14 4 18 18 O 1.42903 * 109.46775 * 306.39752 * 17 16 14 19 19 C 1.42901 * 113.99976 * 179.97438 * 18 17 16 20 20 C 1.54891 * 110.48893 * 305.48968 * 16 14 4 21 21 C 1.54887 * 102.74867 * 279.26891 * 20 16 14 22 22 C 1.54268 * 104.19475 * 322.05228 * 21 20 16 23 23 C 1.53874 * 106.59695 * 23.61626 * 22 21 20 24 24 H 1.08011 * 119.99491 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00662 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99569 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47102 * 351.19698 * 3 2 1 28 28 H 1.09005 * 109.47063 * 111.19727 * 3 2 1 29 29 H 1.09006 * 109.47136 * 209.99779 * 5 4 3 30 30 H 1.08992 * 109.47623 * 330.00313 * 5 4 3 31 31 H 0.97001 * 120.00095 * 179.97438 * 9 8 6 32 32 H 1.08994 * 109.47433 * 66.39475 * 17 16 14 33 33 H 1.08998 * 109.47052 * 186.40239 * 17 16 14 34 34 H 1.08996 * 109.47571 * 300.00850 * 19 18 17 35 35 H 1.09003 * 109.46750 * 60.00970 * 19 18 17 36 36 H 1.08998 * 109.46747 * 180.02562 * 19 18 17 37 37 H 1.09000 * 110.75451 * 37.57918 * 20 16 14 38 38 H 1.08993 * 110.75539 * 160.95089 * 20 16 14 39 39 H 1.09002 * 110.48976 * 203.37906 * 21 20 16 40 40 H 1.09001 * 110.48834 * 80.73654 * 21 20 16 41 41 H 1.09000 * 110.03523 * 264.32403 * 22 21 20 42 42 H 1.09007 * 110.02827 * 142.89289 * 22 21 20 43 43 H 1.09001 * 110.02612 * 240.70824 * 23 22 21 44 44 H 1.08996 * 110.03516 * 119.28490 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0573 1.2951 -1.0763 5 6 4.2456 0.4451 -0.9683 6 6 3.9529 -0.9062 -1.5680 7 1 2.9790 -1.1113 -1.9872 8 6 4.9281 -1.8807 -1.5804 9 7 6.1140 -1.6309 -1.0694 10 14 4.5651 -3.5558 -2.3231 11 1 4.9101 -3.5423 -3.7674 12 1 5.3747 -4.5904 -1.6305 13 1 3.1220 -3.8666 -2.1618 14 6 2.8784 2.0679 -2.1660 15 8 3.6392 1.9764 -3.1059 16 6 1.7328 3.0457 -2.2162 17 6 1.9514 4.1768 -1.2093 18 8 2.1878 3.6221 0.0863 19 6 2.4060 4.5993 1.1059 20 6 0.3907 2.3231 -1.9411 21 6 0.0546 1.6919 -3.3150 22 6 0.5039 2.7542 -4.3395 23 6 1.5710 3.6149 -3.6408 24 1 -0.5400 0.9354 0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3658 2.1275 -0.1573 28 1 2.5670 1.4338 0.9582 29 1 5.0739 0.9087 -1.5042 30 1 4.5133 0.3264 0.0816 31 1 6.8000 -2.3167 -1.0779 32 1 2.8129 4.7718 -1.5125 33 1 1.0652 4.8107 -1.1769 34 1 3.2770 5.2028 0.8505 35 1 1.5295 5.2422 1.1865 36 1 2.5782 4.0981 2.0584 37 1 0.5161 1.5513 -1.1818 38 1 -0.3784 3.0364 -1.6451 39 1 -1.0168 1.5098 -3.3994 40 1 0.6121 0.7659 -3.4561 41 1 -0.3440 3.3742 -4.6308 42 1 0.9314 2.2692 -5.2171 43 1 1.2410 4.6527 -3.5931 44 1 2.5162 3.5477 -4.1794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457800778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = -30.059125 kcal Electronic energy + Delta-G solvation = -24511.803315 eV Core-core repulsion = 21238.258555 eV Total energy + Delta-G solvation = -3273.544760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50572 -37.48828 -36.53349 -35.73919 -33.02298 -32.00059 -30.66676 -28.57001 -27.33287 -26.63535 -25.33131 -24.25926 -23.12306 -21.04303 -20.19628 -19.33639 -17.98076 -16.76713 -16.34808 -16.22510 -15.78146 -15.36037 -15.06930 -14.83673 -14.41554 -14.03562 -13.62764 -13.33056 -12.92252 -12.79554 -12.54060 -12.36967 -11.99709 -11.86376 -11.46613 -11.22303 -11.13364 -11.05549 -10.92623 -10.76312 -10.69678 -10.46195 -10.45364 -10.22088 -10.07891 -9.81510 -9.52713 -9.42695 -8.84955 -8.58577 -8.34952 -7.46603 -5.96155 -3.99170 2.73604 3.35134 3.41151 3.42913 3.50990 3.80626 4.13821 4.50880 4.76021 4.83000 4.92958 5.22927 5.25241 5.35090 5.37830 5.41552 5.45175 5.52609 5.59214 5.63810 5.70275 5.72456 5.86362 5.89688 5.98627 6.04848 6.15782 6.16756 6.18332 6.39841 6.42174 6.47675 6.61467 6.66591 7.12804 7.16180 7.23498 7.27195 7.54679 7.72513 8.01647 8.34603 8.63085 9.01121 9.26657 9.65104 11.11830 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.006765 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.025737 B = 4137.955577 C = 4454.493969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C 0.124 3.876 4 N -0.580 5.580 5 C 0.247 3.753 6 C -0.515 4.515 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.526 3.474 15 O -0.543 6.543 16 C -0.086 4.086 17 C 0.072 3.928 18 O -0.367 6.367 19 C 0.020 3.980 20 C -0.154 4.154 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.106 4.106 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 12.062 2.782 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.161 4.161 3 C 0.001 3.999 4 N -0.309 5.309 5 C 0.128 3.872 6 C -0.554 4.554 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.311 3.689 15 O -0.421 6.421 16 C -0.089 4.089 17 C -0.005 4.005 18 O -0.287 6.287 19 C -0.076 4.076 20 C -0.191 4.191 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.144 4.144 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.558 11.727 2.370 17.345 hybrid contribution -0.058 -0.732 -0.364 0.819 sum -12.616 10.995 2.006 16.855 Atomic orbital electron populations 1.23703 0.95888 1.01039 1.05329 1.23884 0.95964 1.01194 0.95092 1.21325 0.92315 0.94758 0.91473 1.47933 1.23434 1.41905 1.17610 1.19223 0.82116 0.88705 0.97158 1.21459 0.98696 0.96906 1.38339 0.92349 1.24931 0.94954 0.98793 0.95548 1.69939 1.03645 1.34226 1.45797 0.86573 0.78137 0.83722 0.79429 1.20668 1.21276 1.19979 1.19774 0.85242 0.81258 0.82580 1.90630 1.47023 1.69131 1.35330 1.21702 0.96290 0.95171 0.95761 1.22500 0.99966 0.94698 0.83341 1.88418 1.92051 1.31056 1.17136 1.22792 0.99245 0.93158 0.92436 1.23657 0.94196 1.01253 0.99987 1.22323 1.00442 0.98925 0.94373 1.22073 0.97679 0.97206 0.98711 1.22050 1.01017 0.98125 0.93174 0.88844 0.88950 0.85670 0.85873 0.91319 0.94369 0.95196 0.92903 0.92826 0.92521 0.94210 0.94376 0.89614 0.86286 0.91379 0.91868 0.91219 0.92260 0.91728 0.91840 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.22 13.04 29.02 0.38 -2.84 16 2 C -0.14 -2.52 8.67 -36.03 -0.31 -2.83 16 3 C 0.12 2.21 3.36 -5.20 -0.02 2.19 16 4 N -0.58 -12.78 2.40 -176.44 -0.42 -13.20 16 5 C 0.25 6.63 5.04 -5.19 -0.03 6.60 16 6 C -0.52 -14.70 8.02 -34.44 -0.28 -14.98 16 7 H 0.06 1.68 7.45 -52.49 -0.39 1.28 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 10 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.53 11.40 6.20 -10.99 -0.07 11.33 16 15 O -0.54 -14.13 15.08 5.56 0.08 -14.04 16 16 C -0.09 -1.37 0.54 -154.00 -0.08 -1.45 16 17 C 0.07 0.95 4.74 37.16 0.18 1.13 16 18 O -0.37 -5.08 5.43 -35.23 -0.19 -5.28 16 19 C 0.02 0.20 11.01 101.05 1.11 1.32 16 20 C -0.15 -2.19 4.64 -24.74 -0.11 -2.30 16 21 C -0.12 -1.78 6.61 -25.07 -0.17 -1.95 16 22 C -0.12 -1.62 6.80 -25.61 -0.17 -1.80 16 23 C -0.11 -1.54 5.81 -25.61 -0.15 -1.69 16 24 H 0.09 1.17 6.76 -52.48 -0.35 0.82 16 25 H 0.09 1.25 8.06 -52.49 -0.42 0.82 16 26 H 0.13 2.58 6.93 -52.49 -0.36 2.21 16 27 H 0.12 1.92 2.21 -53.38 -0.12 1.80 16 28 H 0.07 1.21 8.00 -51.93 -0.42 0.80 16 29 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.12 1.80 0.84 -51.93 -0.04 1.75 16 38 H 0.07 0.79 7.99 -51.93 -0.42 0.38 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 44 H 0.09 1.49 6.78 -51.93 -0.35 1.14 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -32.84 336.94 -6.58 -39.42 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.03 Total: 2.72 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 0.18 Total: -5.66 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.31 Total: -39.50 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.11 Total: -19.32 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.84 -6.58 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457800778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.365 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds