Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 110.00435 * 2 1 4 4 C 1.51445 * 109.98578 * 121.30083 * 2 1 3 5 5 O 1.20766 * 126.33852 * 298.96735 * 4 2 1 6 6 C 1.51839 * 107.32019 * 118.98767 * 4 2 1 7 7 C 1.54884 * 104.43306 * 23.78889 * 6 4 2 8 8 C 1.54280 * 109.97913 * 238.71300 * 2 1 3 9 9 H 1.08996 * 110.57328 * 336.09212 * 8 2 1 10 10 C 1.52999 * 110.69598 * 98.90309 * 8 2 1 11 11 C 1.50698 * 109.47324 * 180.85378 * 10 8 2 12 12 O 1.21284 * 119.99858 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00244 * 179.97438 * 11 10 8 14 14 C 1.46502 * 119.99962 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47042 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47083 * 299.99937 * 15 14 13 17 17 C 1.53005 * 109.47135 * 59.99543 * 15 14 13 18 18 C 1.50698 * 109.47324 * 179.97438 * 15 14 13 19 19 H 1.07999 * 119.99564 * 0.02562 * 18 15 14 20 20 C 1.37880 * 120.00156 * 179.97438 * 18 15 14 21 21 N 1.31509 * 119.99756 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99882 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47051 * 90.00776 * 22 20 18 24 24 H 1.48504 * 109.47106 * 210.00307 * 22 20 18 25 25 H 1.48494 * 109.47286 * 330.00336 * 22 20 18 26 26 H 1.09003 * 109.47134 * 181.28993 * 1 2 3 27 27 H 1.09001 * 109.46647 * 301.28777 * 1 2 3 28 28 H 1.08997 * 109.47296 * 61.28372 * 1 2 3 29 29 H 1.09002 * 110.44245 * 265.05226 * 6 4 2 30 30 H 1.08996 * 110.44231 * 142.52606 * 6 4 2 31 31 H 1.08997 * 110.83739 * 204.15944 * 7 6 4 32 32 H 1.09002 * 110.83305 * 80.58223 * 7 6 4 33 33 H 1.08997 * 109.47260 * 300.85562 * 10 8 2 34 34 H 1.09000 * 109.47572 * 60.85405 * 10 8 2 35 35 H 0.97001 * 120.00048 * 0.02562 * 13 11 10 36 36 H 1.08996 * 109.46726 * 299.99792 * 14 13 11 37 37 H 1.08998 * 109.47571 * 59.99928 * 14 13 11 38 38 H 1.08998 * 109.47424 * 59.99802 * 16 15 14 39 39 H 1.09000 * 109.47533 * 180.02562 * 16 15 14 40 40 H 1.09004 * 109.47270 * 300.00277 * 16 15 14 41 41 H 1.08997 * 109.46793 * 60.00618 * 17 15 14 42 42 H 1.09000 * 109.46772 * 180.02562 * 17 15 14 43 43 H 1.08998 * 109.47125 * 300.00047 * 17 15 14 44 44 H 0.97006 * 119.99884 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0477 -0.7394 1.2161 5 8 1.8495 -0.4452 2.3705 6 6 2.8624 -1.9188 0.7152 7 6 3.3051 -1.5046 -0.7101 8 6 2.0572 -0.7530 -1.2391 9 1 1.3113 -1.4589 -1.6043 10 6 2.4501 0.2308 -2.3430 11 6 2.9405 -0.5334 -3.5457 12 8 2.9722 -1.7456 -3.5224 13 7 3.3430 0.1302 -4.6477 14 6 3.8192 -0.6128 -5.8171 15 6 4.2123 0.3710 -6.9209 16 6 2.9952 1.2118 -7.3118 17 6 5.3250 1.2900 -6.4126 18 6 4.7027 -0.3932 -8.1236 19 1 4.7308 -1.4726 -8.1029 20 6 5.1145 0.2857 -9.2509 21 7 5.0798 1.6000 -9.2763 22 14 5.7231 -0.6616 -10.7414 23 1 4.5791 -0.9578 -11.6406 24 1 6.7273 0.1543 -11.4703 25 1 6.3469 -1.9343 -10.2983 26 1 -0.3633 -1.0274 0.0231 27 1 -0.3633 0.5337 0.8782 28 1 -0.3634 0.4937 -0.9012 29 1 2.2469 -2.8176 0.6765 30 1 3.7320 -2.0789 1.3525 31 1 3.5168 -2.3823 -1.3207 32 1 4.1691 -0.8413 -0.6702 33 1 1.5830 0.8295 -2.6217 34 1 3.2426 0.8858 -1.9809 35 1 3.3174 1.0996 -4.6665 36 1 4.6865 -1.2114 -5.5387 37 1 3.0267 -1.2678 -6.1789 38 1 2.6408 1.7645 -6.4418 39 1 3.2750 1.9124 -8.0986 40 1 2.2024 0.5571 -7.6739 41 1 6.1920 0.6910 -6.1342 42 1 5.6046 1.9911 -7.1990 43 1 4.9706 1.8427 -5.5426 44 1 5.3699 2.0777 -10.0692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458046599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = -105.145398 kcal Electronic energy + Delta-G solvation = -22394.916284 eV Core-core repulsion = 19118.115538 eV Total energy + Delta-G solvation = -3276.800745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.39288 -39.20083 -36.99495 -36.14238 -33.29633 -31.74630 -31.25184 -30.37880 -26.06682 -25.76131 -25.31655 -24.86864 -24.02187 -21.03710 -19.87715 -19.26494 -18.79859 -17.04307 -16.21886 -15.98044 -15.68633 -15.23866 -15.01352 -14.59858 -14.57423 -14.04794 -13.73205 -13.51113 -13.16938 -12.93720 -12.72751 -12.48725 -12.38630 -12.20144 -11.89306 -11.54888 -11.37846 -11.22494 -11.17345 -10.90136 -10.83707 -10.74694 -10.71507 -10.41527 -10.22993 -9.69012 -9.66590 -9.48290 -9.20117 -8.81502 -8.47589 -8.33021 -6.04994 -4.15159 1.71181 3.04109 3.26170 3.33390 3.36942 3.66335 3.89109 4.28854 4.37841 4.51824 4.59962 4.92333 5.00422 5.09429 5.11012 5.21899 5.23736 5.28334 5.43481 5.51176 5.59396 5.71056 5.75307 5.77230 5.88944 6.12616 6.21483 6.23098 6.30158 6.47755 6.75340 6.78769 6.90119 6.98442 7.01596 7.27409 7.32390 7.52389 7.66622 7.97898 8.03648 8.13135 8.35741 8.69174 8.85857 9.50920 10.96381 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041544 B = 0.003063 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.820337 B = 9139.586204 C = 9363.549525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.153 4.153 3 H 0.104 0.896 4 C 0.374 3.626 5 O -0.451 6.451 6 C -0.184 4.184 7 C -0.113 4.113 8 C -0.066 4.066 9 H 0.093 0.907 10 C -0.136 4.136 11 C 0.504 3.496 12 O -0.551 6.551 13 N -0.718 5.718 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.397 0.603 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 -0.381 15.210 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 H 0.122 0.878 4 C 0.249 3.751 5 O -0.323 6.323 6 C -0.222 4.222 7 C -0.151 4.151 8 C -0.085 4.085 9 H 0.111 0.889 10 C -0.176 4.176 11 C 0.289 3.711 12 O -0.430 6.430 13 N -0.369 5.369 14 C 0.010 3.990 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.029 -0.939 15.685 16.830 hybrid contribution 0.377 0.064 -1.031 1.100 sum -5.652 -0.875 14.655 15.731 Atomic orbital electron populations 1.21682 0.92461 1.02583 1.02769 1.22390 0.98081 1.01557 0.95139 0.87810 1.25057 0.75974 0.85126 0.88900 1.90400 1.52010 1.68045 1.21889 1.22950 1.01339 0.98923 0.98960 1.22544 0.97023 1.01895 0.93606 1.21712 0.98363 0.96364 0.92089 0.88904 1.21738 1.02755 0.98926 0.94220 1.20498 0.77993 0.88362 0.84239 1.90647 1.55417 1.14041 1.82913 1.46353 1.64731 1.10727 1.15067 1.21690 0.97757 0.95187 0.84412 1.18351 0.92695 0.91985 0.91461 1.21830 0.97127 1.00200 0.99686 1.21827 0.98271 1.00145 0.98575 1.20995 1.42898 0.92922 0.97723 0.92459 1.24879 0.95329 0.94881 0.98416 1.69800 1.47737 1.06097 1.28830 0.86576 0.78610 0.79944 0.82776 1.20709 1.21258 1.19892 0.92207 0.92068 0.91263 0.87797 0.89181 0.88698 0.91146 0.88928 0.89019 0.76764 0.92805 0.92815 0.97500 0.89617 0.95485 0.95471 0.89628 0.97509 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.08 37.16 0.34 -0.74 16 2 C -0.15 -1.31 3.01 -90.73 -0.27 -1.58 16 3 H 0.10 0.81 7.84 -51.93 -0.41 0.40 16 4 C 0.37 3.85 7.18 -28.11 -0.20 3.65 16 5 O -0.45 -6.05 17.99 5.99 0.11 -5.95 16 6 C -0.18 -1.63 6.72 -26.33 -0.18 -1.80 16 7 C -0.11 -1.13 5.66 -24.69 -0.14 -1.27 16 8 C -0.07 -0.64 2.02 -88.90 -0.18 -0.82 16 9 H 0.09 0.98 7.74 -51.93 -0.40 0.58 16 10 C -0.14 -1.39 5.07 -27.88 -0.14 -1.53 16 11 C 0.50 7.59 7.62 -10.99 -0.08 7.51 16 12 O -0.55 -10.09 14.54 5.55 0.08 -10.01 16 13 N -0.72 -11.73 4.96 -60.30 -0.30 -12.03 16 14 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 15 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 16 C -0.13 -2.86 8.08 37.16 0.30 -2.55 16 17 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 18 C -0.51 -13.03 8.01 -34.44 -0.28 -13.31 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.89 -23.25 9.35 55.43 0.52 -22.73 16 22 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.13 7.11 -51.93 -0.37 0.76 16 32 H 0.07 0.68 8.02 -51.93 -0.42 0.26 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.40 5.84 6.16 -40.82 -0.25 5.58 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 39 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 44 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -28.79 346.69 -7.49 -36.28 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.38 Total: 3.34 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.72 Total: -9.55 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.22 Total: -34.76 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.19 Total: -15.95 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.79 -7.49 -36.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.865 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds