Wall clock time and date at job start Tue Mar 31 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.99829 * 2 1 4 4 C 1.51445 * 109.98671 * 121.29060 * 2 1 3 5 5 O 1.20757 * 126.34487 * 299.68803 * 4 2 1 6 6 C 1.51840 * 107.31552 * 119.70879 * 4 2 1 7 7 C 1.54897 * 104.43336 * 336.20547 * 6 4 2 8 8 C 1.54275 * 109.98325 * 238.71037 * 2 1 3 9 9 H 1.09008 * 110.69481 * 145.14285 * 8 2 1 10 10 C 1.53004 * 110.57075 * 22.34030 * 8 2 1 11 11 C 1.50702 * 109.46986 * 179.21672 * 10 8 2 12 12 O 1.21277 * 120.00133 * 359.97438 * 11 10 8 13 13 N 1.34780 * 119.99822 * 180.02562 * 11 10 8 14 14 C 1.46493 * 119.99970 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47020 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47124 * 60.00493 * 15 14 13 17 17 C 1.52997 * 109.47156 * 300.00177 * 15 14 13 18 18 C 1.50702 * 109.46871 * 180.02562 * 15 14 13 19 19 H 1.08002 * 120.00358 * 1.34349 * 18 15 14 20 20 C 1.37880 * 119.99648 * 181.35319 * 18 15 14 21 21 N 1.31517 * 119.99603 * 193.97481 * 20 18 15 22 22 Si 1.86797 * 120.00376 * 13.96942 * 20 18 15 23 23 H 1.48506 * 109.46808 * 84.54998 * 22 20 18 24 24 H 1.48499 * 109.47242 * 204.55176 * 22 20 18 25 25 H 1.48504 * 109.46984 * 324.55486 * 22 20 18 26 26 H 1.08998 * 109.46761 * 181.29421 * 1 2 3 27 27 H 1.09002 * 109.46985 * 301.29080 * 1 2 3 28 28 H 1.08994 * 109.47333 * 61.29128 * 1 2 3 29 29 H 1.09002 * 110.44082 * 217.47209 * 6 4 2 30 30 H 1.09000 * 110.55349 * 95.00097 * 6 4 2 31 31 H 1.08989 * 110.83444 * 279.41989 * 7 6 4 32 32 H 1.09003 * 111.00166 * 155.91264 * 7 6 4 33 33 H 1.09003 * 109.47410 * 59.21401 * 10 8 2 34 34 H 1.09005 * 109.46894 * 299.21530 * 10 8 2 35 35 H 0.97006 * 120.00024 * 359.97438 * 13 11 10 36 36 H 1.08998 * 109.47233 * 60.00015 * 14 13 11 37 37 H 1.08996 * 109.47241 * 299.99904 * 14 13 11 38 38 H 1.09009 * 109.46784 * 299.99632 * 16 15 14 39 39 H 1.08995 * 109.47372 * 180.02562 * 16 15 14 40 40 H 1.08995 * 109.47506 * 59.99214 * 16 15 14 41 41 H 1.09008 * 109.46759 * 189.36609 * 17 15 14 42 42 H 1.09001 * 109.47230 * 309.36651 * 17 15 14 43 43 H 1.08993 * 109.47262 * 69.36968 * 17 15 14 44 44 H 0.97007 * 119.99785 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0477 -0.7392 1.2162 5 8 1.8396 -0.4520 2.3705 6 6 2.8773 -1.9082 0.7154 7 6 2.3366 -2.1827 -0.7099 8 6 2.0572 -0.7530 -1.2390 9 1 2.9753 -0.2945 -1.6067 10 6 0.9958 -0.7853 -2.3405 11 6 1.5427 -1.5086 -3.5441 12 8 2.6706 -1.9540 -3.5232 13 7 0.7788 -1.6597 -4.6442 14 6 1.3106 -2.3623 -5.8144 15 6 0.2491 -2.3947 -6.9158 16 6 -0.1241 -0.9633 -7.3066 17 6 -0.9945 -3.1245 -6.4043 18 6 0.7960 -3.1181 -8.1194 19 1 1.7924 -3.5340 -8.0929 20 6 0.0244 -3.2488 -9.2546 21 7 0.3752 -4.1001 -10.1937 22 14 -1.5192 -2.2169 -9.4587 23 1 -1.1571 -0.8899 -10.0184 24 1 -2.4561 -2.9050 -10.3828 25 1 -2.1716 -2.0353 -8.1370 26 1 -0.3633 -1.0274 0.0232 27 1 -0.3633 0.5338 0.8782 28 1 -0.3634 0.4936 -0.9013 29 1 2.7302 -2.7801 1.3528 30 1 3.9330 -1.6395 0.6769 31 1 1.4178 -2.7676 -0.6700 32 1 3.0865 -2.6831 -1.3226 33 1 0.7301 0.2345 -2.6191 34 1 0.1096 -1.3049 -1.9759 35 1 -0.1232 -1.3031 -4.6610 36 1 1.5762 -3.3822 -5.5362 37 1 2.1968 -1.8426 -6.1786 38 1 -0.5199 -0.4404 -6.4358 39 1 -0.8807 -0.9863 -8.0909 40 1 0.7618 -0.4433 -7.6709 41 1 -1.6824 -3.2945 -7.2326 42 1 -0.7021 -4.0817 -5.9725 43 1 -1.4849 -2.5173 -5.6435 44 1 -0.1678 -4.1924 -10.9922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458046610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:54 Heat of formation + Delta-G solvation = -81.030077 kcal Electronic energy + Delta-G solvation = -22607.899831 eV Core-core repulsion = 19332.144804 eV Total energy + Delta-G solvation = -3275.755026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55554 -39.31428 -37.26227 -36.42853 -33.35403 -31.97582 -31.50639 -30.35223 -26.53019 -26.36061 -25.33083 -25.12404 -24.32214 -21.00230 -19.89540 -19.24938 -18.81615 -17.32498 -16.45653 -16.13151 -15.81463 -15.34921 -15.19837 -15.10771 -14.82165 -14.07355 -13.80105 -13.47445 -13.24489 -13.04359 -12.91803 -12.73554 -12.56012 -12.32038 -12.26349 -12.16511 -12.07237 -11.58421 -11.30478 -11.19799 -10.87675 -10.69160 -10.47406 -10.34316 -10.21013 -10.10844 -9.67087 -9.45969 -9.14198 -8.72529 -8.57104 -8.47435 -6.18276 -4.15760 1.66870 2.93749 3.20538 3.27417 3.35667 3.54883 3.83671 4.22188 4.31962 4.45132 4.55213 4.84649 4.94881 4.98735 5.05160 5.12445 5.16569 5.29797 5.34475 5.42386 5.54124 5.58691 5.70343 5.73650 5.77409 5.82824 6.00587 6.01993 6.10531 6.14856 6.31014 6.43906 6.48252 6.58649 6.65114 6.75557 6.93007 7.18216 7.23099 7.38752 7.68563 7.90640 8.40873 8.57727 8.87153 9.45539 10.94858 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040185 B = 0.003344 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.605283 B = 8372.265214 C = 8738.854069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 H 0.102 0.898 4 C 0.374 3.626 5 O -0.450 6.450 6 C -0.185 4.185 7 C -0.112 4.112 8 C -0.067 4.067 9 H 0.092 0.908 10 C -0.138 4.138 11 C 0.504 3.496 12 O -0.546 6.546 13 N -0.724 5.724 14 C 0.142 3.858 15 C 0.028 3.972 16 C -0.147 4.147 17 C -0.142 4.142 18 C -0.514 4.514 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.891 5.891 22 Si 0.886 3.114 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.249 1.249 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.021 0.979 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 8.070 18.229 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 H 0.120 0.880 4 C 0.250 3.750 5 O -0.322 6.322 6 C -0.222 4.222 7 C -0.150 4.150 8 C -0.086 4.086 9 H 0.110 0.890 10 C -0.177 4.177 11 C 0.289 3.711 12 O -0.425 6.425 13 N -0.375 5.375 14 C 0.020 3.980 15 C 0.027 3.973 16 C -0.204 4.204 17 C -0.199 4.199 18 C -0.552 4.552 19 H 0.094 0.906 20 C -0.127 4.127 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.175 1.175 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.601 7.797 18.653 20.226 hybrid contribution -1.275 0.737 -0.537 1.567 sum -1.876 8.533 18.116 20.113 Atomic orbital electron populations 1.21780 0.92564 1.02626 1.02913 1.22343 0.98203 1.01358 0.95188 0.88006 1.25058 0.76519 0.84574 0.88893 1.90401 1.52257 1.67705 1.21885 1.22951 1.01490 0.98837 0.98933 1.22538 1.02283 0.96534 0.93633 1.21660 0.98484 0.96299 0.92111 0.88971 1.21852 0.99995 1.01927 0.93972 1.20564 0.85994 0.80304 0.84189 1.90664 1.19078 1.49970 1.82758 1.46350 1.17769 1.58048 1.15326 1.21483 0.97155 0.95881 0.83512 1.18717 0.92041 0.92416 0.94120 1.22358 1.00531 0.98646 0.98899 1.22291 0.98718 0.99498 0.99389 1.20728 1.02965 1.35612 0.95917 0.90568 1.24981 0.97326 0.94507 0.95933 1.69954 1.39894 1.33411 1.09489 0.87292 0.83648 0.79804 0.77423 1.21360 1.23387 1.17522 0.92037 0.92113 0.90908 0.89149 0.87727 0.91206 0.88683 0.88842 0.88637 0.76980 0.91964 0.92075 0.95189 0.94055 0.92819 0.92556 0.93435 0.95958 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 7.95 37.16 0.30 -0.71 16 2 C -0.15 -1.20 3.36 -90.74 -0.30 -1.51 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.37 3.66 7.18 -28.11 -0.20 3.46 16 5 O -0.45 -5.85 17.99 6.00 0.11 -5.74 16 6 C -0.18 -1.54 6.72 -26.32 -0.18 -1.72 16 7 C -0.11 -1.05 5.66 -24.68 -0.14 -1.19 16 8 C -0.07 -0.59 2.42 -88.90 -0.22 -0.81 16 9 H 0.09 0.90 8.03 -51.92 -0.42 0.48 16 10 C -0.14 -1.25 3.90 -27.88 -0.11 -1.36 16 11 C 0.50 6.99 7.62 -10.98 -0.08 6.91 16 12 O -0.55 -9.50 14.54 5.56 0.08 -9.42 16 13 N -0.72 -10.66 5.00 -60.30 -0.30 -10.96 16 14 C 0.14 2.69 4.49 -4.04 -0.02 2.68 16 15 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 16 C -0.15 -2.86 7.52 37.16 0.28 -2.58 16 17 C -0.14 -2.76 7.53 37.16 0.28 -2.48 16 18 C -0.51 -13.52 8.62 -34.44 -0.30 -13.82 16 19 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 20 C 0.08 2.06 5.32 -17.82 -0.09 1.96 16 21 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 22 Si 0.89 20.65 22.79 -169.99 -3.87 16.78 16 23 H -0.29 -6.65 7.10 56.52 0.40 -6.25 16 24 H -0.31 -7.32 7.11 56.52 0.40 -6.91 16 25 H -0.25 -5.24 4.65 56.52 0.26 -4.98 16 26 H 0.06 0.43 7.63 -51.93 -0.40 0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.42 6.63 -51.93 -0.34 0.07 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.63 8.02 -51.93 -0.42 0.21 16 32 H 0.09 1.08 7.11 -51.93 -0.37 0.71 16 33 H 0.09 0.69 7.59 -51.93 -0.39 0.29 16 34 H 0.10 0.73 6.66 -51.93 -0.35 0.38 16 35 H 0.40 4.98 6.26 -40.82 -0.26 4.73 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.47 6.86 -51.92 -0.36 0.11 16 39 H 0.04 0.86 2.25 -51.93 -0.12 0.74 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.18 4.30 -51.92 -0.22 0.96 16 42 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 43 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -31.24 331.81 -6.16 -37.40 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.08 Total: 3.14 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.86 Total: -10.67 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.47 Total: -36.49 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.19 Total: -15.16 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -3.87 Total: 16.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.24 -6.16 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.632 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds