Wall clock time and date at job start Tue Mar 31 2020 05:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.97395 * 2 1 4 4 C 1.51450 * 109.98321 * 238.68289 * 2 1 3 5 5 O 1.20761 * 126.33920 * 60.98998 * 4 2 1 6 6 C 1.51849 * 107.31678 * 241.00963 * 4 2 1 7 7 C 1.55053 * 104.52749 * 336.31189 * 6 4 2 8 8 C 1.54279 * 109.98554 * 121.26687 * 2 1 3 9 9 H 1.09003 * 110.56884 * 23.75328 * 8 2 1 10 10 C 1.53001 * 110.57230 * 261.03658 * 8 2 1 11 11 C 1.50694 * 109.47168 * 177.05243 * 10 8 2 12 12 O 1.21283 * 120.00367 * 359.97438 * 11 10 8 13 13 N 1.34784 * 119.99992 * 180.02562 * 11 10 8 14 14 C 1.46499 * 119.99897 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47073 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46989 * 59.99821 * 15 14 13 17 17 C 1.53000 * 109.47124 * 300.00146 * 15 14 13 18 18 C 1.50694 * 109.47168 * 179.97438 * 15 14 13 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.09002 * 109.47137 * 298.73576 * 1 2 3 27 27 H 1.09000 * 109.46902 * 58.72720 * 1 2 3 28 28 H 1.08994 * 109.47358 * 178.73335 * 1 2 3 29 29 H 1.08995 * 110.43964 * 94.94978 * 6 4 2 30 30 H 1.09001 * 110.43688 * 217.35115 * 6 4 2 31 31 H 1.09002 * 110.77396 * 279.28967 * 7 6 4 32 32 H 1.08997 * 110.96797 * 155.65386 * 7 6 4 33 33 H 1.09002 * 109.46926 * 57.05418 * 10 8 2 34 34 H 1.08998 * 109.46837 * 297.05222 * 10 8 2 35 35 H 0.96991 * 119.99637 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47239 * 59.99631 * 14 13 11 37 37 H 1.08998 * 109.47134 * 299.99061 * 14 13 11 38 38 H 1.08997 * 109.47359 * 180.02562 * 16 15 14 39 39 H 1.09007 * 109.47356 * 300.00069 * 16 15 14 40 40 H 1.09000 * 109.47156 * 59.99794 * 16 15 14 41 41 H 1.09002 * 109.47106 * 299.99750 * 17 15 14 42 42 H 1.08998 * 109.47089 * 59.99697 * 17 15 14 43 43 H 1.08995 * 109.47131 * 179.97438 * 17 15 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9023 1.0245 0.0000 4 6 2.0475 -0.7398 -1.2159 5 8 1.8487 -0.4464 -2.3704 6 6 2.8623 -1.9191 -0.7146 7 6 3.3046 -1.5073 0.7133 8 6 2.0573 -0.7525 1.2393 9 1 1.3103 -1.4564 1.6065 10 6 2.4507 0.2343 2.3404 11 6 2.8931 -0.5275 3.5630 12 8 2.8932 -1.7403 3.5548 13 7 3.2877 0.1389 4.6661 14 6 3.7183 -0.6016 5.8545 15 6 4.1117 0.3851 6.9556 16 6 2.9082 1.2613 7.3089 17 6 5.2588 1.2692 6.4622 18 6 4.5541 -0.3766 8.1783 19 1 4.5550 -1.4566 8.1707 20 6 4.9576 0.3052 9.3067 21 7 4.9570 1.6203 9.3159 22 14 5.5053 -0.6392 10.8226 23 1 5.8872 0.3186 11.8913 24 1 4.3913 -1.4967 11.3008 25 1 6.6733 -1.4900 10.4805 26 1 -0.3633 0.4941 0.9011 27 1 -0.3633 0.5335 -0.8784 28 1 -0.3634 -1.0273 -0.0227 29 1 2.2469 -2.8178 -0.6757 30 1 3.7307 -2.0806 -1.3532 31 1 4.1700 -0.8457 0.6742 32 1 3.5133 -2.3847 1.3252 33 1 1.5935 0.8588 2.5918 34 1 3.2683 0.8637 1.9889 35 1 3.2873 1.1088 4.6728 36 1 4.5760 -1.2256 5.6028 37 1 2.9012 -1.2317 6.2058 38 1 3.1885 1.9647 8.0930 39 1 2.5878 1.8124 6.4247 40 1 2.0910 0.6315 7.6604 41 1 6.1162 0.6450 6.2104 42 1 4.9384 1.8202 5.5779 43 1 5.5387 1.9725 7.2464 44 1 5.2405 2.0999 10.1099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458046624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:57 Heat of formation + Delta-G solvation = -105.254357 kcal Electronic energy + Delta-G solvation = -22389.100297 eV Core-core repulsion = 19112.294827 eV Total energy + Delta-G solvation = -3276.805470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38774 -39.20090 -36.99483 -36.14477 -33.29436 -31.74282 -31.25152 -30.37720 -26.06965 -25.76034 -25.31662 -24.87372 -24.02239 -21.03478 -19.87893 -19.26748 -18.79845 -17.05244 -16.21248 -15.98128 -15.68062 -15.24033 -15.00884 -14.60720 -14.57611 -14.04423 -13.73244 -13.51226 -13.16583 -12.93531 -12.73024 -12.48048 -12.38809 -12.20225 -11.91204 -11.55122 -11.37685 -11.21803 -11.17062 -10.88600 -10.83015 -10.75323 -10.74805 -10.41222 -10.23051 -9.68803 -9.66425 -9.48960 -9.20457 -8.82210 -8.47273 -8.32860 -6.04767 -4.15038 1.70925 3.04125 3.28047 3.32561 3.35760 3.66561 3.88884 4.28300 4.37807 4.51329 4.59822 4.91920 5.00076 5.08898 5.10965 5.21979 5.23606 5.28322 5.43451 5.51085 5.59319 5.70738 5.75224 5.76920 5.88919 6.10913 6.21475 6.22745 6.30210 6.47809 6.75363 6.78801 6.90201 6.98529 7.01608 7.27171 7.32415 7.52516 7.66604 7.97976 8.03659 8.13183 8.35825 8.69152 8.85755 9.50960 10.96579 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041636 B = 0.003058 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.333316 B = 9154.431698 C = 9370.163873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.153 4.153 3 H 0.104 0.896 4 C 0.374 3.626 5 O -0.450 6.450 6 C -0.184 4.184 7 C -0.113 4.113 8 C -0.067 4.067 9 H 0.093 0.907 10 C -0.136 4.136 11 C 0.503 3.497 12 O -0.551 6.551 13 N -0.718 5.718 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.508 4.508 19 H 0.057 0.943 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.288 1.288 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.397 0.603 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -0.399 -15.351 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 H 0.122 0.878 4 C 0.250 3.750 5 O -0.323 6.323 6 C -0.222 4.222 7 C -0.150 4.150 8 C -0.086 4.086 9 H 0.112 0.888 10 C -0.177 4.177 11 C 0.289 3.711 12 O -0.430 6.430 13 N -0.369 5.369 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.213 1.213 24 H -0.203 1.203 25 H -0.203 1.203 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.672 -0.952 -15.813 16.826 hybrid contribution 0.368 0.050 1.030 1.095 sum -5.304 -0.903 -14.782 15.731 Atomic orbital electron populations 1.21680 0.92457 1.02592 1.02773 1.22391 0.98091 1.01557 0.95131 0.87805 1.25048 0.75980 0.85111 0.88902 1.90399 1.52005 1.68044 1.21880 1.22973 1.01364 0.98936 0.98899 1.22563 0.97041 1.01822 0.93606 1.21723 0.98385 0.96362 0.92096 0.88834 1.21744 1.02955 0.98933 0.94025 1.20502 0.77777 0.88357 0.84461 1.90649 1.54846 1.14000 1.83539 1.46351 1.65741 1.10656 1.14131 1.21692 0.98219 0.95229 0.83911 1.18343 0.92635 0.91958 0.91517 1.21831 0.97237 1.00197 0.99571 1.21827 0.98293 1.00190 0.98513 1.20959 1.44004 0.92834 0.96832 0.92509 1.24880 0.95236 0.94881 0.98479 1.69792 1.47743 1.05985 1.28958 0.86634 0.79183 0.79642 0.82410 1.21318 1.20271 1.20271 0.91259 0.92064 0.92203 0.87813 0.89173 0.91123 0.88793 0.88923 0.89007 0.76764 0.92811 0.92811 0.89621 0.97512 0.95474 0.95477 0.97507 0.89627 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.08 37.16 0.34 -0.75 16 2 C -0.15 -1.31 3.01 -90.74 -0.27 -1.58 16 3 H 0.10 0.81 7.83 -51.93 -0.41 0.40 16 4 C 0.37 3.84 7.18 -28.10 -0.20 3.64 16 5 O -0.45 -6.04 17.99 6.00 0.11 -5.93 16 6 C -0.18 -1.61 6.72 -26.23 -0.18 -1.79 16 7 C -0.11 -1.12 5.74 -24.60 -0.14 -1.26 16 8 C -0.07 -0.65 2.01 -88.90 -0.18 -0.82 16 9 H 0.09 1.00 7.67 -51.93 -0.40 0.60 16 10 C -0.14 -1.39 5.06 -27.89 -0.14 -1.53 16 11 C 0.50 7.60 7.63 -10.98 -0.08 7.52 16 12 O -0.55 -10.12 14.66 5.55 0.08 -10.04 16 13 N -0.72 -11.74 4.96 -60.29 -0.30 -12.04 16 14 C 0.13 2.68 4.50 -4.04 -0.02 2.67 16 15 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 16 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 17 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 18 C -0.51 -13.07 8.01 -34.44 -0.28 -13.34 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.89 -23.27 9.35 55.43 0.52 -22.75 16 22 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.67 7.99 -51.93 -0.41 0.25 16 32 H 0.09 1.10 7.23 -51.93 -0.38 0.73 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.40 5.84 6.16 -40.82 -0.25 5.59 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 43 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 44 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -28.81 346.86 -7.49 -36.29 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.38 Total: 3.36 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.72 Total: -9.55 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.22 Total: -34.79 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.19 Total: -15.97 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.81 -7.49 -36.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.963 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds