Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.97253 * 2 1 4 4 C 1.51449 * 110.02010 * 238.70493 * 2 1 3 5 5 O 1.20762 * 126.33412 * 60.25007 * 4 2 1 6 6 C 1.51840 * 107.31965 * 240.28144 * 4 2 1 7 7 C 1.54886 * 104.43538 * 23.78527 * 6 4 2 8 8 C 1.54282 * 109.98387 * 121.27179 * 2 1 3 9 9 H 1.09001 * 110.57201 * 214.97696 * 8 2 1 10 10 C 1.53002 * 110.57193 * 337.69652 * 8 2 1 11 11 C 1.50699 * 109.47389 * 185.00035 * 10 8 2 12 12 O 1.21277 * 119.99833 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00068 * 179.97438 * 11 10 8 14 14 C 1.46500 * 119.99996 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47007 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47127 * 60.00219 * 15 14 13 17 17 C 1.52997 * 109.47232 * 300.00097 * 15 14 13 18 18 C 1.50699 * 109.47078 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99908 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00364 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47324 * 59.99539 * 22 20 18 24 24 H 1.48494 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99915 * 22 20 18 26 26 H 1.09006 * 109.47058 * 298.72625 * 1 2 3 27 27 H 1.08992 * 109.47213 * 58.72591 * 1 2 3 28 28 H 1.08997 * 109.47283 * 178.73139 * 1 2 3 29 29 H 1.08992 * 110.44255 * 142.52913 * 6 4 2 30 30 H 1.09004 * 110.43815 * 264.92629 * 6 4 2 31 31 H 1.08996 * 110.83510 * 204.16999 * 7 6 4 32 32 H 1.09000 * 110.83434 * 80.58980 * 7 6 4 33 33 H 1.09002 * 109.46838 * 64.99601 * 10 8 2 34 34 H 1.09004 * 109.47006 * 305.00104 * 10 8 2 35 35 H 0.96998 * 119.99906 * 0.02562 * 13 11 10 36 36 H 1.09002 * 109.47092 * 60.00078 * 14 13 11 37 37 H 1.08996 * 109.47197 * 299.99794 * 14 13 11 38 38 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 39 39 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 40 40 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47140 * 180.02562 * 17 15 14 42 42 H 1.09001 * 109.47230 * 299.99295 * 17 15 14 43 43 H 1.09001 * 109.47375 * 60.00133 * 17 15 14 44 44 H 0.96999 * 120.00396 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9023 1.0244 0.0000 4 6 2.0485 -0.7392 -1.2159 5 8 1.8398 -0.4525 -2.3703 6 6 2.8784 -1.9077 -0.7147 7 6 2.3375 -2.1823 0.7104 8 6 2.0572 -0.7527 1.2393 9 1 2.9740 -0.2912 1.6064 10 6 0.9955 -0.7854 2.3404 11 6 1.5763 -1.4160 3.5798 12 8 2.7264 -1.8009 3.5823 13 7 0.8180 -1.5513 4.6857 14 6 1.3829 -2.1639 5.8907 15 6 0.3210 -2.1967 6.9917 16 6 -0.8802 -3.0173 6.5176 17 6 -0.1295 -0.7693 7.3085 18 6 0.9019 -2.8274 8.2311 19 1 1.9260 -3.1701 8.2333 20 6 0.1257 -2.9668 9.3621 21 7 -1.1213 -2.5491 9.3596 22 14 0.8459 -3.7479 10.8986 23 1 2.0114 -2.9512 11.3592 24 1 -0.1847 -3.7799 11.9672 25 1 1.2837 -5.1332 10.5909 26 1 -0.3633 0.4939 0.9012 27 1 -0.3633 0.5335 -0.8783 28 1 -0.3634 -1.0274 -0.0228 29 1 2.7320 -2.7797 -1.3520 30 1 3.9336 -1.6370 -0.6778 31 1 3.0900 -2.6809 1.3213 32 1 1.4190 -2.7678 0.6704 33 1 0.1395 -1.3695 2.0025 34 1 0.6749 0.2316 2.5664 35 1 -0.1017 -1.2431 4.6838 36 1 2.2389 -1.5795 6.2282 37 1 1.7034 -3.1809 5.6652 38 1 -1.3004 -2.5615 5.6211 39 1 -0.5592 -4.0342 6.2920 40 1 -1.6364 -3.0411 7.3022 41 1 -0.8856 -0.7926 8.0932 42 1 0.7262 -0.1847 7.6464 43 1 -0.5498 -0.3135 6.4120 44 1 -1.6672 -2.6468 10.1554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458046643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = -101.592968 kcal Electronic energy + Delta-G solvation = -22500.431980 eV Core-core repulsion = 19223.785280 eV Total energy + Delta-G solvation = -3276.646700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48775 -39.19004 -37.08395 -36.17148 -33.29871 -31.91211 -31.03248 -30.10821 -26.10624 -25.75961 -25.36783 -25.16744 -24.14053 -20.92986 -19.82430 -18.96351 -18.68108 -17.31048 -16.40383 -15.89375 -15.61688 -15.23127 -15.12456 -14.81659 -14.60974 -13.91424 -13.66487 -13.41096 -13.03741 -12.91904 -12.83114 -12.58710 -12.24086 -12.20155 -12.08450 -11.54766 -11.38225 -11.21818 -11.13886 -10.88040 -10.80250 -10.75038 -10.64196 -10.41042 -10.22899 -9.66456 -9.61952 -9.52033 -9.21652 -8.82069 -8.47078 -8.32588 -6.04663 -4.14962 1.70500 3.04893 3.28078 3.32622 3.35825 3.68243 3.87989 4.26346 4.38059 4.50816 4.62256 4.89316 5.00086 5.06310 5.11456 5.22075 5.22854 5.36171 5.41280 5.48426 5.61159 5.65472 5.74531 5.82460 5.88388 6.12204 6.19505 6.22114 6.30433 6.47992 6.75614 6.78936 6.90379 6.98674 7.01988 7.26709 7.32601 7.52567 7.66684 7.98172 8.04106 8.13467 8.35981 8.69862 8.85858 9.51061 10.96668 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042437 B = 0.003130 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.646213 B = 8944.309435 C = 9273.085315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 H 0.102 0.898 4 C 0.374 3.626 5 O -0.450 6.450 6 C -0.184 4.184 7 C -0.112 4.112 8 C -0.067 4.067 9 H 0.093 0.907 10 C -0.137 4.137 11 C 0.502 3.498 12 O -0.552 6.552 13 N -0.718 5.718 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.131 4.131 18 C -0.508 4.508 19 H 0.057 0.943 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.397 0.603 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.006 0.994 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 4.281 -15.506 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 H 0.120 0.880 4 C 0.250 3.750 5 O -0.323 6.323 6 C -0.222 4.222 7 C -0.150 4.150 8 C -0.086 4.086 9 H 0.111 0.889 10 C -0.177 4.177 11 C 0.288 3.712 12 O -0.431 6.431 13 N -0.369 5.369 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.025 0.975 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.940 4.158 -15.961 16.608 hybrid contribution -0.076 -0.272 1.027 1.066 sum 1.864 3.887 -14.934 15.543 Atomic orbital electron populations 1.21780 0.92513 1.02655 1.02944 1.22352 0.98246 1.01358 0.95160 0.88017 1.25064 0.76498 0.84560 0.88906 1.90400 1.52290 1.67721 1.21886 1.22944 1.01480 0.98845 0.98899 1.22523 1.02146 0.96634 0.93658 1.21667 0.98622 0.96163 0.92105 0.88891 1.21837 0.99696 1.02526 0.93612 1.20567 0.86477 0.79473 0.84715 1.90647 1.17848 1.50498 1.84129 1.46347 1.15888 1.61461 1.13184 1.21689 0.97580 0.96306 0.83478 1.18344 0.91122 0.93411 0.91576 1.21829 1.00826 0.97688 0.98480 1.21829 1.01105 0.96426 0.99478 1.20959 0.98175 1.39523 0.95972 0.92514 1.24875 0.94819 0.95231 0.98537 1.69786 1.06970 1.46825 1.28902 0.86638 0.78759 0.79941 0.82548 1.20277 1.21319 1.20267 0.90833 0.92145 0.92049 0.89171 0.87754 0.88968 0.91113 0.88741 0.88821 0.76774 0.92830 0.92822 0.97501 0.95486 0.89623 0.89624 0.95483 0.97494 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.00 37.16 0.30 -0.80 16 2 C -0.15 -1.30 3.36 -90.73 -0.30 -1.60 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.37 3.82 7.18 -28.10 -0.20 3.62 16 5 O -0.45 -6.02 17.99 6.00 0.11 -5.91 16 6 C -0.18 -1.60 6.72 -26.33 -0.18 -1.78 16 7 C -0.11 -1.10 5.80 -24.69 -0.14 -1.24 16 8 C -0.07 -0.64 2.39 -88.90 -0.21 -0.86 16 9 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 10 C -0.14 -1.39 3.87 -27.88 -0.11 -1.49 16 11 C 0.50 7.58 7.65 -10.99 -0.08 7.50 16 12 O -0.55 -10.18 14.79 5.56 0.08 -10.10 16 13 N -0.72 -11.73 4.96 -60.30 -0.30 -12.03 16 14 C 0.13 2.68 4.50 -4.04 -0.02 2.67 16 15 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 16 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 17 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 18 C -0.51 -13.07 8.01 -34.44 -0.28 -13.34 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.25 9.35 55.43 0.52 -22.74 16 22 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.07 0.48 6.53 -51.93 -0.34 0.14 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16 32 H 0.07 0.66 7.96 -51.93 -0.41 0.25 16 33 H 0.09 0.82 6.85 -51.93 -0.36 0.46 16 34 H 0.09 0.79 7.35 -51.93 -0.38 0.41 16 35 H 0.40 5.82 6.16 -40.82 -0.25 5.57 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 41 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 44 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -28.90 342.08 -7.45 -36.35 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.20 Total: 3.45 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.80 Total: -9.61 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.22 Total: -34.76 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.19 Total: -16.01 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.90 -7.45 -36.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.238 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds