Wall clock time and date at job start Tue Mar 31 2020 05:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.97253 * 2 1 4 4 C 1.51449 * 110.02010 * 238.70493 * 2 1 3 5 5 O 1.20762 * 126.33412 * 60.25007 * 4 2 1 6 6 C 1.51840 * 107.31965 * 240.28144 * 4 2 1 7 7 C 1.54886 * 104.43538 * 23.78527 * 6 4 2 8 8 C 1.54282 * 109.98387 * 121.27179 * 2 1 3 9 9 H 1.09001 * 110.57201 * 214.97696 * 8 2 1 10 10 C 1.53002 * 110.57193 * 337.69652 * 8 2 1 11 11 C 1.50699 * 109.47389 * 185.00035 * 10 8 2 12 12 O 1.21277 * 119.99833 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00068 * 179.97438 * 11 10 8 14 14 C 1.46500 * 119.99996 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47007 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47127 * 60.00219 * 15 14 13 17 17 C 1.52997 * 109.47232 * 300.00097 * 15 14 13 18 18 C 1.50699 * 109.47078 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99908 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00364 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.47324 * 59.99539 * 22 20 18 24 24 H 1.48494 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99915 * 22 20 18 26 26 H 1.09006 * 109.47058 * 298.72625 * 1 2 3 27 27 H 1.08992 * 109.47213 * 58.72591 * 1 2 3 28 28 H 1.08997 * 109.47283 * 178.73139 * 1 2 3 29 29 H 1.08992 * 110.44255 * 142.52913 * 6 4 2 30 30 H 1.09004 * 110.43815 * 264.92629 * 6 4 2 31 31 H 1.08996 * 110.83510 * 204.16999 * 7 6 4 32 32 H 1.09000 * 110.83434 * 80.58980 * 7 6 4 33 33 H 1.09002 * 109.46838 * 64.99601 * 10 8 2 34 34 H 1.09004 * 109.47006 * 305.00104 * 10 8 2 35 35 H 0.96998 * 119.99906 * 0.02562 * 13 11 10 36 36 H 1.09002 * 109.47092 * 60.00078 * 14 13 11 37 37 H 1.08996 * 109.47197 * 299.99794 * 14 13 11 38 38 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 39 39 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 40 40 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47140 * 180.02562 * 17 15 14 42 42 H 1.09001 * 109.47230 * 299.99295 * 17 15 14 43 43 H 1.09001 * 109.47375 * 60.00133 * 17 15 14 44 44 H 0.96999 * 120.00396 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9023 1.0244 0.0000 4 6 2.0485 -0.7392 -1.2159 5 8 1.8398 -0.4525 -2.3703 6 6 2.8784 -1.9077 -0.7147 7 6 2.3375 -2.1823 0.7104 8 6 2.0572 -0.7527 1.2393 9 1 2.9740 -0.2912 1.6064 10 6 0.9955 -0.7854 2.3404 11 6 1.5763 -1.4160 3.5798 12 8 2.7264 -1.8009 3.5823 13 7 0.8180 -1.5513 4.6857 14 6 1.3829 -2.1639 5.8907 15 6 0.3210 -2.1967 6.9917 16 6 -0.8802 -3.0173 6.5176 17 6 -0.1295 -0.7693 7.3085 18 6 0.9019 -2.8274 8.2311 19 1 1.9260 -3.1701 8.2333 20 6 0.1257 -2.9668 9.3621 21 7 -1.1213 -2.5491 9.3596 22 14 0.8459 -3.7479 10.8986 23 1 2.0114 -2.9512 11.3592 24 1 -0.1847 -3.7799 11.9672 25 1 1.2837 -5.1332 10.5909 26 1 -0.3633 0.4939 0.9012 27 1 -0.3633 0.5335 -0.8783 28 1 -0.3634 -1.0274 -0.0228 29 1 2.7320 -2.7797 -1.3520 30 1 3.9336 -1.6370 -0.6778 31 1 3.0900 -2.6809 1.3213 32 1 1.4190 -2.7678 0.6704 33 1 0.1395 -1.3695 2.0025 34 1 0.6749 0.2316 2.5664 35 1 -0.1017 -1.2431 4.6838 36 1 2.2389 -1.5795 6.2282 37 1 1.7034 -3.1809 5.6652 38 1 -1.3004 -2.5615 5.6211 39 1 -0.5592 -4.0342 6.2920 40 1 -1.6364 -3.0411 7.3022 41 1 -0.8856 -0.7926 8.0932 42 1 0.7262 -0.1847 7.6464 43 1 -0.5498 -0.3135 6.4120 44 1 -1.6672 -2.6468 10.1554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458046643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:58 Heat of formation + Delta-G solvation = -117.963109 kcal Electronic energy + Delta-G solvation = -22501.141843 eV Core-core repulsion = 19223.785280 eV Total energy + Delta-G solvation = -3277.356563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37992 -40.38336 -38.32151 -37.49934 -34.90872 -32.93300 -32.41326 -31.08155 -27.53342 -27.52801 -27.04328 -25.90931 -25.35103 -21.98809 -20.86743 -20.54099 -19.61336 -18.45800 -17.71855 -17.23394 -16.71287 -16.58418 -16.35819 -16.07023 -15.79481 -15.05810 -14.90021 -14.66891 -14.27869 -14.12765 -14.01607 -13.66184 -13.45114 -13.22094 -13.07845 -12.99858 -12.83506 -12.62359 -12.61548 -12.28312 -12.20641 -12.12380 -11.86659 -11.57806 -11.44471 -11.36896 -11.20961 -10.73034 -10.58597 -10.37864 -10.34843 -9.81663 -8.01109 -6.16760 0.91386 1.44215 1.45828 1.51980 1.86024 2.39475 2.55464 3.14237 3.22468 3.49851 3.70463 3.86037 4.12324 4.21480 4.29263 4.38912 4.47540 4.53642 4.56462 4.65215 4.66420 4.76475 4.82385 4.91143 4.94862 5.05652 5.07366 5.09789 5.12672 5.15710 5.23338 5.26286 5.36685 5.42232 5.45829 5.68546 5.69595 5.70629 6.19229 6.25540 6.46037 6.48623 6.81659 6.88252 7.48145 7.51122 8.97261 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042437 B = 0.003130 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.646213 B = 8944.309435 C = 9273.085315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 H 0.114 0.886 4 C 0.376 3.624 5 O -0.485 6.485 6 C -0.180 4.180 7 C -0.112 4.112 8 C -0.064 4.064 9 H 0.082 0.918 10 C -0.127 4.127 11 C 0.500 3.500 12 O -0.588 6.588 13 N -0.715 5.715 14 C 0.149 3.851 15 C 0.051 3.949 16 C -0.120 4.120 17 C -0.121 4.121 18 C -0.531 4.531 19 H 0.043 0.957 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 0.942 3.058 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.277 1.277 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.409 0.591 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.016 0.984 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.041 0.959 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 5.062 -16.500 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 H 0.132 0.868 4 C 0.254 3.746 5 O -0.361 6.361 6 C -0.217 4.217 7 C -0.149 4.149 8 C -0.083 4.083 9 H 0.100 0.900 10 C -0.166 4.166 11 C 0.288 3.712 12 O -0.469 6.469 13 N -0.367 5.367 14 C 0.025 3.975 15 C 0.051 3.949 16 C -0.178 4.178 17 C -0.178 4.178 18 C -0.570 4.570 19 H 0.061 0.939 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.203 1.203 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.246 0.754 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.095 4.947 -16.958 17.699 hybrid contribution 0.229 -0.530 1.324 1.445 sum 1.325 4.417 -15.634 16.300 Atomic orbital electron populations 1.21834 0.91428 1.03089 1.03737 1.22283 0.99013 1.01456 0.93389 0.86822 1.25351 0.75783 0.84686 0.88744 1.90395 1.53677 1.68749 1.23267 1.22933 1.01786 0.98736 0.98265 1.22475 1.01865 0.96789 0.93802 1.21607 0.98230 0.96029 0.92403 0.89962 1.21897 1.00073 1.03890 0.90751 1.21448 0.85842 0.78451 0.85418 1.90644 1.19674 1.51847 1.84752 1.46190 1.16537 1.61588 1.12371 1.21173 0.96396 0.95323 0.84601 1.18342 0.91771 0.93667 0.91169 1.21666 0.99753 0.97366 0.99031 1.21667 0.99976 0.96043 1.00161 1.21295 0.97835 1.40039 0.97812 0.93875 1.25428 0.95233 0.95779 1.00629 1.69893 1.07434 1.47174 1.29241 0.85869 0.78138 0.79070 0.80042 1.20312 1.20859 1.20288 0.88993 0.92517 0.91771 0.88512 0.86842 0.91080 0.90452 0.86325 0.86024 0.75435 0.94704 0.94671 0.94077 0.96483 0.92109 0.92104 0.96480 0.94057 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.00 71.98 0.58 -1.14 16 2 C -0.14 -2.04 3.36 -10.87 -0.04 -2.07 16 3 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.38 7.02 7.18 29.70 0.21 7.24 16 5 O -0.49 -12.44 17.99 -1.45 -0.03 -12.47 16 6 C -0.18 -2.86 6.72 30.86 0.21 -2.65 16 7 C -0.11 -2.01 5.80 31.92 0.19 -1.82 16 8 C -0.06 -1.07 2.39 -9.68 -0.02 -1.09 16 9 H 0.08 1.60 7.89 -2.39 -0.02 1.58 16 10 C -0.13 -2.12 3.87 29.85 0.12 -2.00 16 11 C 0.50 14.07 7.65 87.66 0.67 14.74 16 12 O -0.59 -21.29 14.79 -3.02 -0.04 -21.34 16 13 N -0.72 -21.84 4.96 -463.08 -2.30 -24.14 16 14 C 0.15 6.02 4.50 86.38 0.39 6.41 16 15 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 16 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 17 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 18 C -0.53 -27.64 8.01 25.60 0.21 -27.44 16 19 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 20 C 0.03 1.51 5.15 84.66 0.44 1.95 16 21 N -0.90 -47.20 9.35 21.45 0.20 -47.00 16 22 Si 0.94 42.06 29.54 68.60 2.03 44.08 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 H 0.09 0.77 6.53 -2.38 -0.02 0.76 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.74 7.67 -2.39 -0.02 0.72 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 1.61 7.37 -2.39 -0.02 1.59 16 32 H 0.08 1.28 7.96 -2.39 -0.02 1.26 16 33 H 0.12 1.50 6.85 -2.39 -0.02 1.49 16 34 H 0.12 1.45 7.35 -2.38 -0.02 1.43 16 35 H 0.41 10.54 6.16 -92.71 -0.57 9.97 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 2.92 6.07 -2.39 -0.01 2.90 16 41 H 0.06 2.92 6.07 -2.39 -0.01 2.90 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 44 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -63.14 342.08 4.35 -58.79 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.42 Total: 16.79 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.07 Total: -14.72 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -2.10 Total: -71.14 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.07 Total: -33.80 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -63.14 4.35 -58.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.171 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds