Wall clock time and date at job start Tue Mar 31 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00041 * 2 1 4 4 C 1.53005 * 109.46863 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47000 * 65.00119 * 4 3 2 6 6 C 1.36818 * 120.00081 * 269.99791 * 5 4 3 7 7 H 1.08000 * 119.99493 * 135.07803 * 6 5 4 8 8 C 1.39072 * 119.99666 * 315.07296 * 6 5 4 9 9 N 1.31341 * 120.00306 * 1.93354 * 8 6 5 10 10 Si 1.86805 * 119.99503 * 181.93739 * 8 6 5 11 11 H 1.48492 * 109.47578 * 59.99931 * 10 8 6 12 12 H 1.48506 * 109.47117 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46834 * 299.99939 * 10 8 6 14 14 C 1.34787 * 119.99950 * 90.00241 * 5 4 3 15 15 O 1.21660 * 119.99874 * 355.75482 * 14 5 4 16 16 C 1.46947 * 119.99654 * 175.76299 * 14 5 4 17 17 C 1.33131 * 119.99611 * 185.12762 * 16 14 5 18 18 C 1.50696 * 119.99733 * 185.07790 * 17 16 14 19 19 C 1.53004 * 109.47260 * 235.02483 * 18 17 16 20 20 C 1.52998 * 109.47447 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46841 * 60.00046 * 20 19 18 22 22 C 1.52998 * 109.47480 * 299.99976 * 21 20 19 23 23 C 1.53001 * 109.46886 * 115.03233 * 18 17 16 24 24 H 1.08995 * 109.46631 * 59.99886 * 1 2 3 25 25 H 1.08993 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46698 * 300.00134 * 1 2 3 27 27 H 1.09008 * 109.47333 * 60.00476 * 3 2 1 28 28 H 1.09001 * 109.47324 * 299.99681 * 3 2 1 29 29 H 1.08997 * 109.47213 * 305.00221 * 4 3 2 30 30 H 1.09001 * 109.47020 * 185.00258 * 4 3 2 31 31 H 0.97001 * 120.00088 * 185.00200 * 9 8 6 32 32 H 1.08001 * 120.00388 * 5.12423 * 16 14 5 33 33 H 1.07999 * 119.99735 * 5.07866 * 17 16 14 34 34 H 1.08998 * 109.47530 * 355.02557 * 18 17 16 35 35 H 1.09008 * 109.46756 * 60.00306 * 19 18 17 36 36 H 1.08994 * 109.47077 * 300.00943 * 19 18 17 37 37 H 1.08998 * 109.47509 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.46853 * 300.00375 * 20 19 18 39 39 H 1.09007 * 109.46937 * 60.00489 * 21 20 19 40 40 H 1.09006 * 109.46758 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47257 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47366 * 300.00375 * 22 21 20 43 43 H 1.08998 * 109.47589 * 59.99359 * 23 18 17 44 44 H 1.09003 * 109.46699 * 299.99397 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0966 -0.7959 -1.3369 7 1 3.7121 -1.3199 -2.1994 8 6 4.7148 -1.5037 -0.3117 9 7 5.1485 -0.8711 0.7545 10 14 4.9283 -3.3543 -0.4512 11 1 5.7473 -3.6693 -1.6491 12 1 5.6105 -3.8669 0.7642 13 1 3.5961 -3.9979 -0.5791 14 6 4.2616 1.3337 -2.3218 15 8 4.0806 2.5357 -2.2721 16 6 4.7917 0.7205 -3.5475 17 6 5.1700 1.4893 -4.5665 18 6 5.6055 0.8595 -5.8644 19 6 7.0016 1.3651 -6.2335 20 6 7.4436 0.7262 -7.5515 21 6 6.4558 1.1033 -8.6574 22 6 5.0597 0.5977 -8.2885 23 6 4.6179 1.2361 -6.9706 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8464 0.8901 28 1 1.6887 1.8463 -0.8900 29 1 3.8515 0.5680 0.8409 30 1 3.9787 2.1763 0.0890 31 1 5.6436 -1.3522 1.4360 32 1 4.8746 -0.3537 -3.6218 33 1 5.1647 2.5643 -4.4628 34 1 5.6296 -0.2244 -5.7523 35 1 7.7053 1.0969 -5.4453 36 1 6.9776 2.4490 -6.3455 37 1 8.4384 1.0860 -7.8142 38 1 7.4675 -0.3578 -7.4398 39 1 6.4319 2.1873 -8.7692 40 1 6.7704 0.6477 -9.5964 41 1 4.3561 0.8659 -9.0766 42 1 5.0836 -0.4863 -8.1767 43 1 4.5939 2.3201 -7.0827 44 1 3.6233 0.8759 -6.7077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493031993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:34 Heat of formation + Delta-G solvation = -86.655686 kcal Electronic energy + Delta-G solvation = -22587.377702 eV Core-core repulsion = 19311.378731 eV Total energy + Delta-G solvation = -3275.998971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.83307 -38.28915 -36.85128 -34.69262 -33.27594 -31.48967 -30.65986 -29.82561 -28.54804 -25.76654 -24.70767 -23.43300 -22.44664 -21.75607 -19.92040 -19.51584 -18.69014 -16.80901 -16.20379 -15.45712 -15.31528 -15.08252 -14.43863 -14.36636 -14.21406 -14.09026 -13.95827 -13.62483 -13.12336 -12.89555 -12.51984 -12.10437 -11.95222 -11.82006 -11.63307 -11.40912 -11.16559 -11.05866 -10.96789 -10.89206 -10.82241 -10.59975 -10.35623 -10.28766 -10.11904 -10.00980 -9.96924 -9.01170 -8.88513 -8.49837 -8.42487 -7.36275 -6.21014 -4.03383 2.35164 3.22294 3.26300 3.27929 4.15972 4.50998 4.61399 4.69965 4.81462 4.88280 4.99090 5.16873 5.30601 5.36630 5.54340 5.59380 5.59486 5.65637 5.71532 5.73822 5.79499 5.94010 6.03092 6.05704 6.06003 6.12371 6.18048 6.22139 6.24870 6.26752 6.32014 6.47132 6.47972 6.51160 6.61781 6.84337 7.27279 7.36425 7.38320 7.67570 7.93647 8.14885 8.49274 9.18317 9.58985 10.01364 10.77189 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.004640 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.459757 B = 6033.331889 C = 6829.847032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.422 5.422 6 C -0.312 4.312 7 H 0.084 0.916 8 C 0.049 3.951 9 N -0.874 5.874 10 Si 0.918 3.082 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.493 3.507 15 O -0.615 6.615 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.055 4.055 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.030 0.970 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.269 0.731 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 0.560 -10.895 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.025 4.025 5 N -0.138 5.138 6 C -0.441 4.441 7 H 0.101 0.899 8 C -0.155 4.155 9 N -0.512 5.512 10 Si 0.745 3.255 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.284 3.716 15 O -0.504 6.504 16 C -0.173 4.173 17 C -0.142 4.142 18 C -0.074 4.074 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.147 4.147 24 H 0.048 0.952 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.416 0.878 -10.581 10.626 hybrid contribution -0.203 -0.768 0.140 0.806 sum -0.620 0.110 -10.441 10.460 Atomic orbital electron populations 1.22634 0.83760 1.01594 0.98678 1.88167 1.17038 1.27725 1.94974 1.23012 0.96883 0.84181 0.98198 1.21865 0.89063 0.99194 0.92349 1.43206 1.55297 1.06184 1.09137 1.19233 1.37074 0.81118 1.06655 0.89865 1.25459 0.95055 0.99952 0.95040 1.69460 1.35731 1.37021 1.08979 0.86142 0.78636 0.83027 0.77702 1.19896 1.20960 1.19782 1.18678 0.81320 0.85954 0.85599 1.90597 1.59822 1.15215 1.84720 1.22858 1.00178 1.00525 0.93697 1.23347 0.97699 0.99964 0.93218 1.20277 0.94528 0.99997 0.92582 1.21552 0.96250 1.00373 0.96742 1.21543 0.98237 1.00783 0.95124 1.21542 0.95315 1.00910 0.97896 1.21533 0.96397 1.00493 0.97219 1.21514 0.98704 1.00750 0.93730 0.95172 0.90527 0.95274 0.94542 0.94582 0.84803 0.91697 0.91962 0.85860 0.86751 0.90780 0.91725 0.91956 0.92298 0.92031 0.92141 0.92500 0.92294 0.92037 0.91936 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -8.10 10.18 -35.23 -0.36 -8.45 16 3 C 0.05 1.21 6.28 37.16 0.23 1.44 16 4 C 0.10 2.47 5.40 -4.04 -0.02 2.44 16 5 N -0.42 -11.02 2.50 -116.21 -0.29 -11.31 16 6 C -0.31 -8.13 7.67 -15.02 -0.12 -8.24 16 7 H 0.08 2.10 7.17 -52.49 -0.38 1.73 16 8 C 0.05 1.27 5.37 -17.45 -0.09 1.17 16 9 N -0.87 -23.36 10.75 55.50 0.60 -22.76 16 10 Si 0.92 20.03 29.56 -169.99 -5.02 15.00 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 14 C 0.49 12.59 7.57 -12.73 -0.10 12.50 16 15 O -0.61 -16.79 15.87 5.22 0.08 -16.70 16 16 C -0.15 -3.26 8.92 -37.83 -0.34 -3.60 16 17 C -0.12 -2.22 8.34 -36.09 -0.30 -2.52 16 18 C -0.06 -0.79 2.48 -91.77 -0.23 -1.02 16 19 C -0.11 -1.41 5.19 -26.73 -0.14 -1.55 16 20 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 21 C -0.12 -1.17 5.92 -26.73 -0.16 -1.32 16 22 C -0.12 -1.25 5.92 -26.75 -0.16 -1.41 16 23 C -0.11 -1.38 5.18 -26.75 -0.14 -1.52 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.13 3.57 5.17 -51.93 -0.27 3.30 16 30 H 0.06 1.62 7.48 -51.93 -0.39 1.24 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.12 2.57 6.56 -52.49 -0.34 2.22 16 33 H 0.11 2.22 7.52 -52.49 -0.39 1.82 16 34 H 0.07 1.07 7.82 -51.93 -0.41 0.67 16 35 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -29.67 353.52 -7.92 -37.59 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.66 Total: 4.74 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.60 Total: -3.42 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.31 Total: -34.08 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.28 Total: -25.16 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.67 -7.92 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493031993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.068 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds