Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00084 * 2 1 4 4 C 1.52999 * 109.47316 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47450 * 64.99311 * 4 3 2 6 6 C 1.36823 * 120.00405 * 270.00362 * 5 4 3 7 7 H 1.08004 * 119.99909 * 135.18238 * 6 5 4 8 8 C 1.39072 * 119.99655 * 315.18854 * 6 5 4 9 9 N 1.31347 * 120.00145 * 2.24592 * 8 6 5 10 10 Si 1.86799 * 119.99547 * 182.24710 * 8 6 5 11 11 H 1.48500 * 109.47300 * 89.99953 * 10 8 6 12 12 H 1.48506 * 109.47131 * 209.99826 * 10 8 6 13 13 H 1.48493 * 109.47495 * 329.99790 * 10 8 6 14 14 C 1.34783 * 119.99929 * 90.00237 * 5 4 3 15 15 O 1.21663 * 119.99641 * 5.62855 * 14 5 4 16 16 C 1.46948 * 120.00138 * 185.63089 * 14 5 4 17 17 C 1.33122 * 120.00046 * 185.92326 * 16 14 5 18 18 C 1.50695 * 119.99979 * 16.34813 * 17 16 14 19 19 C 1.52999 * 109.47455 * 252.47415 * 18 17 16 20 20 C 1.52997 * 109.47231 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47339 * 60.00049 * 20 19 18 22 22 C 1.52999 * 109.46919 * 300.00142 * 21 20 19 23 23 C 1.52997 * 109.47231 * 59.99792 * 22 21 20 24 24 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47205 * 300.00308 * 1 2 3 26 26 H 1.09005 * 109.47045 * 60.00568 * 1 2 3 27 27 H 1.08994 * 109.47540 * 59.99668 * 3 2 1 28 28 H 1.09003 * 109.46601 * 299.99501 * 3 2 1 29 29 H 1.09008 * 109.46903 * 304.99688 * 4 3 2 30 30 H 1.08993 * 109.47284 * 184.99585 * 4 3 2 31 31 H 0.97002 * 119.99672 * 185.01322 * 9 8 6 32 32 H 1.08004 * 120.00271 * 5.64672 * 16 14 5 33 33 H 1.08005 * 119.99981 * 196.35110 * 17 16 14 34 34 H 1.09007 * 109.47075 * 12.47390 * 18 17 16 35 35 H 1.09007 * 109.46959 * 300.00046 * 19 18 17 36 36 H 1.08998 * 109.47471 * 59.99881 * 19 18 17 37 37 H 1.08995 * 109.47438 * 299.99623 * 20 19 18 38 38 H 1.09009 * 109.47156 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47739 * 179.97438 * 21 20 19 40 40 H 1.09007 * 109.47037 * 59.99766 * 21 20 19 41 41 H 1.08999 * 109.46996 * 299.99366 * 22 21 20 42 42 H 1.09007 * 109.46918 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46671 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47438 * 60.00377 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.0967 -0.7959 -1.3366 7 1 3.7138 -1.3198 -2.2000 8 6 4.7126 -1.5039 -0.3102 9 7 5.1386 -0.8722 0.7597 10 14 4.9340 -3.3532 -0.4533 11 1 6.2368 -3.6470 -1.1025 12 1 4.9077 -3.9611 0.9013 13 1 3.8335 -3.9216 -1.2724 14 6 4.2616 1.3336 -2.3218 15 8 4.2534 2.5459 -2.2186 16 6 4.5831 0.7082 -3.6121 17 6 4.9799 1.4607 -4.6360 18 6 5.4531 2.8711 -4.3957 19 6 4.3975 3.8564 -4.9014 20 6 4.8777 5.2883 -4.6568 21 6 6.1919 5.5204 -5.4051 22 6 7.2475 4.5351 -4.8994 23 6 6.7673 3.1032 -5.1440 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8465 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8514 0.5683 0.8410 30 1 3.9785 2.1765 0.0888 31 1 5.6324 -1.3530 1.4423 32 1 4.5017 -0.3625 -3.7284 33 1 4.9627 1.0604 -5.6390 34 1 5.6113 3.0243 -3.3281 35 1 4.2393 3.7032 -5.9690 36 1 3.4613 3.6915 -4.3680 37 1 5.0355 5.4413 -3.5892 38 1 4.1257 5.9903 -5.0175 39 1 6.5338 6.5407 -5.2312 40 1 6.0340 5.3675 -6.4727 41 1 7.4054 4.6881 -3.8318 42 1 8.1839 4.7008 -5.4322 43 1 7.5196 2.4013 -4.7841 44 1 6.6095 2.9502 -6.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493031994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = -73.066273 kcal Electronic energy + Delta-G solvation = -23194.323220 eV Core-core repulsion = 19918.913530 eV Total energy + Delta-G solvation = -3275.409690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.05267 -37.90624 -36.83871 -34.74816 -32.94738 -31.47743 -30.35127 -29.74758 -28.47783 -25.77934 -24.68324 -23.24421 -22.16808 -21.73582 -19.98972 -19.39680 -18.69504 -16.36137 -16.29311 -15.46345 -15.30829 -14.99280 -14.40596 -14.30953 -14.03079 -13.89018 -13.75706 -13.45578 -12.94041 -12.79608 -12.27370 -12.12778 -11.84973 -11.80965 -11.60272 -11.34980 -11.15588 -10.99218 -10.87129 -10.79383 -10.71486 -10.51116 -10.27531 -10.06803 -9.97863 -9.86839 -9.54455 -8.97731 -8.90632 -8.42113 -8.06298 -7.30787 -6.18671 -4.01501 2.32048 3.21526 3.27709 3.30217 4.16904 4.50285 4.60502 4.92301 5.04909 5.11472 5.14026 5.19003 5.57338 5.66434 5.71495 5.75330 5.77088 5.89237 5.90346 5.93235 5.97317 6.00216 6.03590 6.11329 6.22435 6.24127 6.29991 6.44776 6.45087 6.46655 6.53459 6.60323 6.63758 6.82840 6.89807 7.06756 7.20148 7.39977 7.52037 7.70182 7.94266 8.17779 8.49892 9.19675 9.60534 10.02175 10.79327 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.005237 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.868687 B = 5345.733173 C = 6260.209423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.056 3.944 4 C 0.097 3.903 5 N -0.424 5.424 6 C -0.313 4.313 7 H 0.084 0.916 8 C 0.048 3.952 9 N -0.875 5.875 10 Si 0.919 3.081 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.496 3.504 15 O -0.598 6.598 16 C -0.165 4.165 17 C -0.112 4.112 18 C -0.076 4.076 19 C -0.093 4.093 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.111 4.111 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.268 0.732 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 5.419 -7.116 9.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.022 4.022 4 C -0.027 4.027 5 N -0.140 5.140 6 C -0.441 4.441 7 H 0.102 0.898 8 C -0.156 4.156 9 N -0.514 5.514 10 Si 0.746 3.254 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.195 1.195 14 C 0.288 3.712 15 O -0.487 6.487 16 C -0.186 4.186 17 C -0.133 4.133 18 C -0.093 4.093 19 C -0.131 4.131 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.149 4.149 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.152 0.848 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.371 5.739 -6.783 8.990 hybrid contribution -0.235 -0.943 -0.054 0.973 sum -1.606 4.797 -6.836 8.504 Atomic orbital electron populations 1.22635 0.83775 1.01615 0.98655 1.88176 1.17018 1.27715 1.94957 1.23031 0.96945 0.84174 0.98055 1.21865 0.88846 0.99454 0.92526 1.43225 1.55625 1.06223 1.08973 1.19286 1.37044 0.81273 1.06532 0.89838 1.25424 0.95239 0.99873 0.95039 1.69459 1.36225 1.36895 1.08830 0.86058 0.78644 0.83078 0.77663 1.20461 1.20949 1.19467 1.18627 0.80665 0.86337 0.85581 1.90509 1.58254 1.14220 1.85677 1.22859 1.01777 1.00049 0.93918 1.23389 0.96792 0.96112 0.96980 1.20755 0.93040 0.91409 1.04124 1.21301 0.99106 0.93600 0.99065 1.21497 0.96116 0.96995 1.00785 1.21523 0.95927 0.98353 0.99606 1.21493 0.97444 0.95216 1.01286 1.21584 0.97668 0.95988 0.99639 0.90520 0.95288 0.95187 0.94549 0.94826 0.84777 0.91438 0.92100 0.85840 0.87712 0.86160 0.93737 0.91668 0.91656 0.93002 0.92812 0.92606 0.91936 0.92775 0.92425 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.94 10.18 -35.23 -0.36 -8.29 16 3 C 0.06 1.19 6.28 37.16 0.23 1.42 16 4 C 0.10 2.35 5.48 -4.05 -0.02 2.33 16 5 N -0.42 -10.76 2.50 -116.21 -0.29 -11.05 16 6 C -0.31 -8.06 7.91 -15.02 -0.12 -8.18 16 7 H 0.08 2.09 6.79 -52.48 -0.36 1.74 16 8 C 0.05 1.23 5.38 -17.45 -0.09 1.14 16 9 N -0.88 -23.40 10.73 55.50 0.60 -22.80 16 10 Si 0.92 20.09 29.56 -169.99 -5.02 15.07 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.50 12.02 7.35 -12.73 -0.09 11.92 16 15 O -0.60 -14.84 12.28 5.22 0.06 -14.78 16 16 C -0.17 -3.45 9.28 -37.84 -0.35 -3.81 16 17 C -0.11 -2.01 8.82 -36.09 -0.32 -2.33 16 18 C -0.08 -1.32 1.65 -91.78 -0.15 -1.47 16 19 C -0.09 -1.50 4.96 -26.73 -0.13 -1.63 16 20 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 21 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 22 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 23 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.14 3.54 5.15 -51.92 -0.27 3.28 16 30 H 0.07 1.64 7.35 -51.93 -0.38 1.26 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.12 2.50 6.57 -52.48 -0.34 2.15 16 33 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.12 2.56 5.18 -51.93 -0.27 2.29 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.19 7.68 -51.93 -0.40 0.79 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -28.23 346.71 -7.83 -36.07 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.49 Total: 6.46 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.55 Total: -5.89 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.31 Total: -33.86 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.29 Total: -23.07 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.23 -7.83 -36.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493031994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.000 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds