Wall clock time and date at job start Tue Mar 31 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47235 * 2 1 4 4 C 1.46506 * 119.99600 * 269.99306 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99859 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99847 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46845 * 60.00273 * 9 7 5 11 11 H 1.48506 * 109.47071 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47159 * 299.99829 * 9 7 5 13 13 C 1.34773 * 120.00431 * 89.99765 * 3 2 1 14 14 O 1.21617 * 120.00326 * 180.02562 * 13 3 2 15 15 C 1.47106 * 120.00041 * 359.97438 * 13 3 2 16 16 C 1.32986 * 120.00137 * 180.02562 * 15 13 3 17 17 C 1.50706 * 120.00177 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.54009 * 359.54558 * 17 16 15 19 19 C 1.53177 * 109.54498 * 239.28203 * 17 16 15 20 20 C 1.53089 * 109.16584 * 183.15139 * 19 17 16 21 21 O 1.42901 * 109.41352 * 57.60312 * 20 19 17 22 22 C 1.42905 * 114.10157 * 298.84598 * 21 20 19 23 23 C 1.53087 * 109.41404 * 61.15843 * 22 21 20 24 24 H 1.08998 * 109.47162 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47204 * 300.00876 * 1 2 3 26 26 H 1.09006 * 109.46811 * 60.00383 * 1 2 3 27 27 H 1.08999 * 109.47644 * 239.98961 * 2 1 3 28 28 H 1.09006 * 109.46811 * 119.99617 * 2 1 3 29 29 H 1.09003 * 109.47017 * 30.00282 * 4 3 2 30 30 H 1.09002 * 109.46900 * 149.99874 * 4 3 2 31 31 H 0.97007 * 120.00051 * 179.97438 * 8 7 5 32 32 H 1.07998 * 119.99541 * 0.02562 * 15 13 3 33 33 H 1.08000 * 120.00462 * 359.72205 * 16 15 13 34 34 H 1.08999 * 109.47333 * 59.99804 * 18 17 16 35 35 H 1.08994 * 109.46787 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.47211 * 299.99957 * 18 17 16 37 37 H 1.09002 * 109.51814 * 303.05469 * 19 17 16 38 38 H 1.08999 * 109.52418 * 63.24238 * 19 17 16 39 39 H 1.08998 * 109.47750 * 297.62598 * 20 19 17 40 40 H 1.08995 * 109.49082 * 177.59301 * 20 19 17 41 41 H 1.08999 * 109.47638 * 301.17401 * 22 21 20 42 42 H 1.09000 * 109.49376 * 181.14854 * 22 21 20 43 43 H 1.09004 * 109.52194 * 182.48942 * 23 22 21 44 44 H 1.08997 * 109.57414 * 62.32855 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0960 7 6 4.1493 2.3893 -2.8779 8 7 3.3494 3.1253 -3.6182 9 14 5.9134 2.0952 -3.4174 10 1 6.1404 0.6384 -3.5945 11 1 6.1606 2.7942 -4.7041 12 1 6.8412 2.6187 -2.3828 13 6 2.2430 2.0166 1.1671 14 8 2.6479 3.1634 1.1671 15 6 1.9972 1.3235 2.4411 16 6 2.2184 1.9506 3.5928 17 6 1.9672 1.2403 4.8980 18 6 1.4554 -0.1746 4.6204 19 6 0.9242 2.0142 5.7101 20 6 0.7336 1.3294 7.0660 21 8 1.9886 1.2654 7.7464 22 6 2.9889 0.5137 7.0561 23 6 3.2701 1.1659 5.7000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5819 1.6875 -2.0285 30 1 2.0957 3.1410 -1.1386 31 1 3.6755 3.5158 -4.4441 32 1 1.6372 0.3053 2.4412 33 1 2.5827 2.9673 3.5928 34 1 2.2009 -0.7244 4.0459 35 1 1.2737 -0.6870 5.5651 36 1 0.5266 -0.1202 4.0525 37 1 1.2680 3.0371 5.8639 38 1 -0.0230 2.0245 5.1709 39 1 0.3513 0.3202 6.9128 40 1 0.0239 1.8999 7.6650 41 1 2.6361 -0.5061 6.9029 42 1 3.9041 0.4966 7.6480 43 1 4.0006 0.5694 5.1534 44 1 3.6619 2.1715 5.8526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493626270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:44 Heat of formation + Delta-G solvation = -76.651826 kcal Electronic energy + Delta-G solvation = -22660.246575 eV Core-core repulsion = 19384.681404 eV Total energy + Delta-G solvation = -3275.565171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24842 -38.92635 -36.16127 -35.22329 -32.82507 -31.41340 -31.36568 -30.04409 -27.92990 -27.25063 -25.23020 -23.79954 -23.13217 -22.90453 -20.72036 -18.72797 -17.84112 -17.12587 -16.37498 -16.21235 -15.95008 -15.53571 -15.05323 -14.80519 -14.52414 -14.22322 -14.16794 -13.59207 -13.28862 -12.88483 -12.63945 -12.34402 -12.22249 -12.17833 -11.99931 -11.67635 -11.60488 -11.51927 -11.18553 -11.01388 -10.94464 -10.89855 -10.69275 -10.49290 -10.41622 -10.11549 -9.67054 -9.63591 -9.11740 -8.89197 -8.41447 -7.61227 -6.02308 -4.07093 1.77137 3.32798 3.37073 3.40322 3.65603 3.95462 4.05276 4.44252 4.52509 4.53811 4.54240 4.81162 4.95260 4.98356 5.04913 5.25677 5.27485 5.32439 5.33613 5.42636 5.45978 5.48221 5.52994 5.66021 5.69588 5.73010 5.79003 5.86842 5.88280 6.01336 6.06387 6.12937 6.25410 6.50437 6.59146 6.66441 6.96318 7.14592 7.47767 7.59099 7.94505 8.26052 8.48111 8.92598 9.15160 9.57945 11.05680 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.003710 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.928118 B = 7545.553062 C = 8020.884171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.532 3.468 14 O -0.547 6.547 15 C -0.200 4.200 16 C -0.080 4.080 17 C -0.036 4.036 18 C -0.152 4.152 19 C -0.142 4.142 20 C 0.060 3.940 21 O -0.384 6.384 22 C 0.060 3.940 23 C -0.143 4.143 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 -9.166 18.914 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.323 5.323 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.321 3.679 14 O -0.427 6.427 15 C -0.221 4.221 16 C -0.100 4.100 17 C -0.036 4.036 18 C -0.209 4.209 19 C -0.180 4.180 20 C -0.016 4.016 21 O -0.303 6.303 22 C -0.016 4.016 23 C -0.181 4.181 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.185 -8.374 18.855 21.538 hybrid contribution 0.918 -0.329 -0.877 1.312 sum -5.267 -8.703 17.978 20.657 Atomic orbital electron populations 1.22229 0.96830 1.01289 1.02385 1.21422 0.93465 0.84317 1.02519 1.48158 1.63198 1.13159 1.07764 1.19261 0.96212 0.93662 0.78182 1.21409 0.96952 1.31913 1.06219 0.92547 1.24933 0.97844 0.94939 0.96382 1.69928 1.35712 1.33450 1.14363 0.86561 0.84827 0.78234 0.77810 1.20257 1.21159 1.20188 1.18444 0.78799 0.86413 0.84261 1.90745 1.46418 1.18042 1.87480 1.23109 1.04723 1.01065 0.93209 1.23488 0.94427 0.99791 0.92293 1.19708 0.95518 0.95276 0.93107 1.22106 1.01743 0.95345 1.01745 1.22205 0.99476 1.00331 0.95972 1.22619 0.85949 1.00019 0.93050 1.87925 1.21647 1.74194 1.46545 1.22623 0.91882 0.94197 0.92919 1.22211 0.96969 1.02864 0.96019 0.92273 0.92985 0.92089 0.90066 0.91695 0.95046 0.93919 0.92686 0.85511 0.85750 0.91771 0.92255 0.91803 0.90547 0.90478 0.92933 0.88912 0.92915 0.88882 0.90405 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.11 1.75 5.84 -4.04 -0.02 1.73 16 3 N -0.59 -12.88 2.46 -176.45 -0.43 -13.32 16 4 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 5 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.53 11.56 7.62 -12.66 -0.10 11.46 16 14 O -0.55 -14.35 15.80 5.26 0.08 -14.27 16 15 C -0.20 -3.16 8.19 -37.81 -0.31 -3.47 16 16 C -0.08 -1.13 8.35 -36.13 -0.30 -1.43 16 17 C -0.04 -0.37 0.74 -155.47 -0.12 -0.49 16 18 C -0.15 -1.35 6.59 37.16 0.24 -1.10 16 19 C -0.14 -1.35 4.91 -26.59 -0.13 -1.48 16 20 C 0.06 0.51 6.57 37.20 0.24 0.75 16 21 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16 22 C 0.06 0.52 6.57 37.20 0.24 0.77 16 23 C -0.14 -1.40 4.90 -26.59 -0.13 -1.53 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.89 6.10 -51.93 -0.32 0.58 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.13 1.64 3.92 -52.49 -0.21 1.43 16 33 H 0.12 1.99 7.49 -52.49 -0.39 1.60 16 34 H 0.06 0.58 7.48 -51.93 -0.39 0.19 16 35 H 0.06 0.45 5.02 -51.93 -0.26 0.19 16 36 H 0.06 0.55 7.53 -51.93 -0.39 0.16 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.39 6.61 -51.93 -0.34 0.05 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.40 6.60 -51.93 -0.34 0.06 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -33.84 347.39 -7.44 -41.28 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.21 Total: -1.42 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.44 Total: -4.03 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.30 Total: -39.54 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.30 Total: -18.63 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.84 -7.44 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493626270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.377 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds