Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 C 1.50701 * 109.46831 * 120.00150 * 2 1 3 5 5 H 1.08001 * 119.99776 * 120.00320 * 4 2 1 6 6 C 1.37877 * 119.99923 * 299.99644 * 4 2 1 7 7 N 1.31511 * 120.00317 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99711 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47404 * 90.00052 * 8 6 4 10 10 H 1.48499 * 109.46939 * 210.00145 * 8 6 4 11 11 H 1.48503 * 109.46876 * 330.00109 * 8 6 4 12 12 N 1.46497 * 109.46964 * 239.99913 * 2 1 3 13 13 C 1.46496 * 120.00129 * 300.00292 * 12 2 1 14 14 C 1.34777 * 119.99525 * 119.99799 * 12 2 1 15 15 O 1.21613 * 120.00251 * 0.02562 * 14 12 2 16 16 C 1.47111 * 119.99716 * 180.02562 * 14 12 2 17 17 C 1.32991 * 119.99614 * 180.02562 * 16 14 12 18 18 C 1.50701 * 119.99575 * 179.72107 * 17 16 14 19 19 C 1.53004 * 109.54597 * 0.27963 * 18 17 16 20 20 C 1.53178 * 109.54558 * 240.10021 * 18 17 16 21 21 C 1.53110 * 109.15693 * 183.24391 * 20 18 17 22 22 O 1.42902 * 109.48561 * 57.47440 * 21 20 18 23 23 C 1.42904 * 114.09977 * 298.88911 * 22 21 20 24 24 C 1.53087 * 109.41590 * 61.15976 * 23 22 21 25 25 H 1.09003 * 109.46985 * 299.99894 * 1 2 3 26 26 H 1.09005 * 109.47285 * 59.99646 * 1 2 3 27 27 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 28 28 H 0.96996 * 120.00155 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47115 * 269.99822 * 13 12 2 30 30 H 1.08995 * 109.47364 * 30.00213 * 13 12 2 31 31 H 1.09002 * 109.47090 * 149.99764 * 13 12 2 32 32 H 1.07992 * 119.99779 * 0.02562 * 16 14 12 33 33 H 1.08002 * 120.00602 * 0.02562 * 17 16 14 34 34 H 1.09002 * 109.46694 * 59.99326 * 19 18 17 35 35 H 1.08995 * 109.47412 * 179.97438 * 19 18 17 36 36 H 1.08998 * 109.47044 * 300.00240 * 19 18 17 37 37 H 1.08996 * 109.52032 * 303.05742 * 20 18 17 38 38 H 1.08998 * 109.52358 * 63.25081 * 20 18 17 39 39 H 1.08998 * 109.40149 * 297.49311 * 21 20 18 40 40 H 1.08997 * 109.49043 * 177.50681 * 21 20 18 41 41 H 1.09001 * 109.47969 * 301.17457 * 23 22 21 42 42 H 1.09003 * 109.48999 * 181.14918 * 23 22 21 43 43 H 1.09001 * 109.52754 * 182.48898 * 24 23 22 44 44 H 1.08993 * 109.57517 * 62.32929 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0080 9 1 3.6304 -0.5443 4.4119 10 1 1.3444 -0.9491 5.1123 11 1 2.4879 -2.5655 3.7121 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0931 -1.4280 14 6 2.7931 -0.0355 -2.0833 15 8 3.0872 1.1286 -1.8906 16 6 3.2830 -0.7288 -3.2848 17 6 4.0479 -0.0826 -4.1599 18 6 4.5550 -0.7946 -5.3875 19 6 4.0439 -2.2368 -5.3905 20 6 6.0867 -0.7939 -5.3844 21 6 6.5921 -1.4471 -6.6736 22 8 6.0663 -0.7449 -7.8016 23 6 4.6395 -0.7544 -7.8817 24 6 4.0557 -0.0714 -6.6422 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7082 1.1608 3.4844 29 1 2.4156 -2.7377 -0.9717 30 1 0.6903 -2.3001 -0.9847 31 1 1.6237 -2.2851 -2.5002 32 1 3.0214 -1.7625 -3.4560 33 1 4.3099 0.9511 -3.9884 34 1 2.9539 -2.2359 -5.3958 35 1 4.4109 -2.7505 -6.2789 36 1 4.4023 -2.7511 -4.4988 37 1 6.4503 0.2323 -5.3307 38 1 6.4495 -1.3554 -4.5235 39 1 6.2632 -2.4857 -6.7063 40 1 7.6812 -1.4097 -6.6975 41 1 4.2850 -1.7840 -7.9303 42 1 4.3218 -0.2180 -8.7758 43 1 2.9673 -0.1168 -6.6798 44 1 4.3760 0.9700 -6.6141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493713512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = -71.088065 kcal Electronic energy + Delta-G solvation = -22635.282015 eV Core-core repulsion = 19359.958107 eV Total energy + Delta-G solvation = -3275.323909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25257 -38.94446 -36.21369 -35.24288 -32.87305 -31.47111 -31.37393 -29.30838 -27.85411 -26.13492 -25.36514 -25.12802 -23.80982 -22.33452 -20.12906 -18.67024 -17.86978 -17.13560 -16.40397 -16.21959 -15.85300 -15.45004 -15.01729 -14.82690 -14.59306 -14.28823 -14.22961 -13.51636 -12.85448 -12.65080 -12.60297 -12.38425 -12.22560 -12.22448 -11.70718 -11.53223 -11.51923 -11.46888 -11.05175 -10.95432 -10.92115 -10.82065 -10.69012 -10.44318 -10.23326 -10.15460 -9.67857 -9.17746 -9.13927 -8.93457 -8.41476 -7.54117 -6.06053 -4.14042 1.74398 3.27541 3.33914 3.35735 3.64984 3.95340 4.02652 4.39463 4.52672 4.53141 4.53434 4.80190 4.95094 4.97807 5.04942 5.24160 5.29750 5.32423 5.33428 5.44540 5.48005 5.52405 5.68664 5.72782 5.73184 5.87365 5.89158 6.00479 6.07776 6.12383 6.30664 6.56861 6.64078 6.78319 6.85376 6.95654 7.07817 7.47588 7.55735 7.73257 8.03586 8.21520 8.57011 8.85367 9.10340 9.52585 10.99279 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033254 B = 0.003399 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.801730 B = 8236.941482 C = 8443.742539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.588 5.588 13 C 0.087 3.913 14 C 0.530 3.470 15 O -0.558 6.558 16 C -0.200 4.200 17 C -0.079 4.079 18 C -0.036 4.036 19 C -0.153 4.153 20 C -0.143 4.143 21 C 0.060 3.940 22 O -0.384 6.384 23 C 0.060 3.940 24 C -0.142 4.142 25 H 0.094 0.906 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -7.606 -18.533 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.318 5.318 13 C -0.057 4.057 14 C 0.319 3.681 15 O -0.440 6.440 16 C -0.221 4.221 17 C -0.099 4.099 18 C -0.037 4.037 19 C -0.210 4.210 20 C -0.180 4.180 21 C -0.016 4.016 22 O -0.303 6.303 23 C -0.016 4.016 24 C -0.180 4.180 25 H 0.112 0.888 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.788 -6.808 -18.372 20.430 hybrid contribution 0.019 -0.725 1.278 1.469 sum 5.807 -7.533 -17.094 19.562 Atomic orbital electron populations 1.22095 0.98244 0.99335 1.00855 1.18942 0.90857 0.94565 0.80016 0.91892 1.21326 1.31731 1.12955 0.90314 0.92318 1.24899 0.94962 0.95007 0.98965 1.69878 1.36381 1.22688 1.23726 0.86491 0.78656 0.79852 0.82359 1.20610 1.21117 1.19933 1.48137 1.48636 1.11567 1.23485 1.21573 1.01510 0.83292 0.99286 1.18515 0.79411 0.86603 0.83575 1.90722 1.58879 1.17095 1.77263 1.23093 1.01931 1.01019 0.96064 1.23493 0.93767 0.99925 0.92686 1.19715 0.95249 0.95319 0.93369 1.22111 1.01637 0.95055 1.02182 1.22212 0.94286 1.02865 0.98674 1.22624 0.98868 0.94923 0.85222 1.87925 1.20532 1.75986 1.45854 1.22621 0.81039 1.00036 0.97948 1.22206 1.01361 1.00633 0.93793 0.88776 0.96987 0.95110 0.92698 0.93369 0.90927 0.92897 0.85445 0.85742 0.91816 0.92237 0.91716 0.90551 0.90370 0.92923 0.88869 0.92916 0.88898 0.90465 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.71 2.64 -69.08 -0.18 6.53 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.59 -12.94 2.75 -176.66 -0.49 -13.42 16 13 C 0.09 1.49 9.39 59.84 0.56 2.05 16 14 C 0.53 11.43 7.63 -12.66 -0.10 11.34 16 15 O -0.56 -14.31 15.55 5.27 0.08 -14.23 16 16 C -0.20 -3.15 8.19 -37.80 -0.31 -3.46 16 17 C -0.08 -1.10 8.35 -36.13 -0.30 -1.40 16 18 C -0.04 -0.37 0.74 -155.47 -0.12 -0.49 16 19 C -0.15 -1.36 6.59 37.16 0.24 -1.11 16 20 C -0.14 -1.38 4.91 -26.58 -0.13 -1.51 16 21 C 0.06 0.52 6.57 37.21 0.24 0.76 16 22 O -0.38 -3.95 10.77 -35.23 -0.38 -4.33 16 23 C 0.06 0.51 6.57 37.20 0.24 0.75 16 24 C -0.14 -1.34 4.91 -26.59 -0.13 -1.47 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 31 H 0.05 0.71 6.09 -51.93 -0.32 0.39 16 32 H 0.13 1.65 3.92 -52.49 -0.21 1.45 16 33 H 0.12 1.95 7.49 -52.49 -0.39 1.56 16 34 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 35 H 0.06 0.45 5.02 -51.93 -0.26 0.19 16 36 H 0.06 0.58 7.50 -51.93 -0.39 0.20 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.40 6.61 -51.93 -0.34 0.06 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.39 6.60 -51.93 -0.34 0.05 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -32.16 338.22 -7.01 -39.18 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.91 Total: 0.61 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.02 Total: -4.29 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.14 Total: -38.25 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.30 Total: -18.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.16 -7.01 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493713512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.911 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds