Wall clock time and date at job start Tue Mar 31 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42903 * 114.00364 * 2 1 4 4 C 1.52997 * 109.47403 * 180.02562 * 3 2 1 5 5 C 1.53000 * 115.55187 * 29.67557 * 4 3 2 6 6 C 1.50699 * 109.47155 * 65.53854 * 5 4 3 7 7 O 1.21283 * 120.00018 * 5.18980 * 6 5 4 8 8 N 1.34776 * 120.00281 * 185.18039 * 6 5 4 9 9 C 1.46496 * 120.00209 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.46765 * 90.00431 * 9 8 6 11 11 H 1.08001 * 119.99726 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99810 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00364 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99934 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46817 * 90.00108 * 14 12 10 16 16 H 1.48494 * 109.47234 * 209.99852 * 14 12 10 17 17 H 1.48497 * 109.47195 * 330.00329 * 14 12 10 18 18 C 1.46497 * 119.99509 * 0.02562 * 8 6 5 19 19 C 1.53003 * 109.47518 * 89.99975 * 18 8 6 20 20 C 1.53004 * 117.49633 * 243.74907 * 19 18 8 21 21 C 1.52998 * 117.50242 * 175.08607 * 19 18 8 22 22 C 1.52998 * 117.49734 * 243.96649 * 4 3 2 23 23 C 1.52995 * 60.00047 * 252.50890 * 22 4 3 24 24 H 1.09004 * 109.47632 * 300.00687 * 1 2 3 25 25 H 1.09007 * 109.47147 * 60.00280 * 1 2 3 26 26 H 1.08997 * 109.47559 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47081 * 299.99841 * 3 2 1 28 28 H 1.09005 * 109.47120 * 59.99627 * 3 2 1 29 29 H 1.08997 * 109.46925 * 185.54435 * 5 4 3 30 30 H 1.09002 * 109.46750 * 305.54213 * 5 4 3 31 31 H 1.08995 * 109.47479 * 210.00050 * 9 8 6 32 32 H 1.08996 * 109.47296 * 330.00967 * 9 8 6 33 33 H 0.96998 * 120.00347 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47130 * 209.99684 * 18 8 6 35 35 H 1.09001 * 109.47433 * 329.99483 * 18 8 6 36 36 H 1.09001 * 115.54922 * 29.40995 * 19 18 8 37 37 H 1.09000 * 117.50031 * 359.97438 * 20 19 18 38 38 H 1.09003 * 117.49731 * 145.02223 * 20 19 18 39 39 H 1.09000 * 117.49867 * 214.97712 * 21 19 18 40 40 H 1.09000 * 117.49734 * 359.97438 * 21 19 18 41 41 H 1.09007 * 117.50199 * 0.02562 * 22 4 3 42 42 H 1.09002 * 117.49801 * 145.02003 * 22 4 3 43 43 H 1.09001 * 117.49975 * 252.50928 * 23 22 4 44 44 H 1.09008 * 117.49527 * 107.49252 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.0983 -0.0629 -0.6845 6 6 3.7866 -0.0119 -2.1580 7 8 3.2584 0.9714 -2.6324 8 7 4.0950 -1.0589 -2.9488 9 6 3.7915 -1.0095 -4.3811 10 6 4.9661 -0.4261 -5.1236 11 1 5.8503 -0.1230 -4.5826 12 6 4.9122 -0.2805 -6.4935 13 7 3.8357 -0.6501 -7.1523 14 14 6.3679 0.4432 -7.4138 15 1 7.2918 -0.6479 -7.8152 16 1 5.8844 1.1531 -8.6252 17 1 7.0847 1.3996 -6.5326 18 6 4.7327 -2.2467 -2.3756 19 6 3.6562 -3.2348 -1.9218 20 6 3.5700 -3.5481 -0.4267 21 6 4.1213 -4.5950 -1.3980 22 6 4.2871 1.7224 1.2186 23 6 4.3464 2.4773 -0.1109 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8464 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 5.1784 -0.0990 -0.5425 30 1 3.6445 -0.9526 -0.2478 31 1 3.5954 -2.0176 -4.7460 32 1 2.9124 -0.3863 -4.5449 33 1 3.7979 -0.5479 -8.1162 34 1 5.3649 -2.7184 -3.1279 35 1 5.3420 -1.9550 -1.5202 36 1 2.7230 -3.2044 -2.4843 37 1 4.2804 -3.0507 0.2336 38 1 2.5802 -3.7243 -0.0057 39 1 3.4940 -5.4594 -1.6155 40 1 5.1942 -4.7861 -1.3771 41 1 3.6951 2.1619 2.0214 42 1 5.1829 1.1873 1.5339 43 1 5.2812 2.4388 -0.6702 44 1 3.7934 3.4139 -0.1829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519406308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:22 Heat of formation + Delta-G solvation = -33.240818 kcal Electronic energy + Delta-G solvation = -23346.062029 eV Core-core repulsion = 20072.379301 eV Total energy + Delta-G solvation = -3273.682729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.54714 -38.05509 -36.96692 -36.37814 -34.20527 -32.46969 -29.55820 -27.96699 -27.27938 -25.76153 -25.26488 -22.74833 -22.29514 -22.16060 -20.55694 -19.44785 -18.00224 -16.43758 -16.40278 -16.20646 -15.82364 -15.51357 -15.10901 -14.63167 -14.46985 -14.23913 -13.94015 -13.57815 -13.10251 -12.72388 -12.40085 -12.32695 -11.99530 -11.73710 -11.46967 -11.35571 -11.32370 -11.18961 -11.15225 -10.82670 -10.75512 -10.52667 -10.23920 -10.19477 -10.00267 -9.84459 -9.67598 -9.53742 -9.33966 -8.57344 -8.37918 -7.51897 -5.98441 -4.02657 3.32845 3.39280 3.43573 3.66452 3.72209 3.93629 4.02469 4.23692 4.50329 4.86013 4.95131 5.05773 5.12515 5.15563 5.18130 5.25577 5.35373 5.35564 5.49229 5.56197 5.61758 5.65426 5.72393 5.75806 5.79623 5.85752 5.95803 6.05433 6.07001 6.11435 6.17681 6.24362 6.26014 6.28769 6.33427 6.58606 7.19559 7.35021 7.54863 7.68400 7.99489 8.31755 8.59811 8.98521 9.29692 9.62632 11.09489 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.005898 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.548628 B = 4745.955075 C = 5634.113666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.104 3.896 4 C -0.097 4.097 5 C -0.100 4.100 6 C 0.517 3.483 7 O -0.539 6.539 8 N -0.599 5.599 9 C 0.248 3.752 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.145 3.855 19 C -0.161 4.161 20 C -0.179 4.179 21 C -0.180 4.180 22 C -0.179 4.179 23 C -0.155 4.155 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 -2.231 17.354 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.028 3.972 4 C -0.098 4.098 5 C -0.140 4.140 6 C 0.304 3.696 7 O -0.417 6.417 8 N -0.330 5.330 9 C 0.129 3.871 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.020 3.980 19 C -0.180 4.180 20 C -0.216 4.216 21 C -0.218 4.218 22 C -0.216 4.216 23 C -0.192 4.192 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.916 -1.870 16.879 17.090 hybrid contribution 0.569 0.482 -0.633 0.978 sum -1.347 -1.389 16.246 16.361 Atomic orbital electron populations 1.22664 0.81562 1.02382 0.99605 1.87855 1.19083 1.27794 1.95330 1.21937 0.90740 0.84654 0.99874 1.20913 0.92404 0.95688 1.00778 1.21166 1.00655 0.98240 0.93925 1.20153 0.78872 0.82983 0.87545 1.90615 1.43205 1.31874 1.75982 1.48138 1.59566 1.14563 1.10722 1.19207 0.97178 0.97462 0.73271 1.21457 1.01322 1.41427 0.91907 0.92597 1.24926 0.96129 0.95570 0.97507 1.69935 1.27500 1.47970 1.08104 0.86532 0.82546 0.79227 0.79319 1.20691 1.21155 1.19955 1.20965 0.92969 0.85834 0.98252 1.22904 1.01990 0.96846 0.96305 1.23003 1.02244 1.03555 0.92803 1.22917 1.01192 0.92916 1.04774 1.23200 1.02537 1.04288 0.91580 1.22929 1.01992 0.95346 0.98983 0.94684 0.94058 0.89946 0.91759 0.94027 0.90211 0.88043 0.95241 0.94056 0.92834 0.89797 0.91714 0.87553 0.89030 0.89208 0.89163 0.88910 0.88960 0.88822 0.88467 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.38 -5.94 9.48 -35.23 -0.33 -6.27 16 3 C 0.10 1.57 5.46 37.16 0.20 1.77 16 4 C -0.10 -1.46 1.51 -154.51 -0.23 -1.69 16 5 C -0.10 -1.62 3.58 -27.88 -0.10 -1.72 16 6 C 0.52 11.08 7.49 -10.99 -0.08 11.00 16 7 O -0.54 -13.63 14.57 5.55 0.08 -13.55 16 8 N -0.60 -13.04 2.46 -175.06 -0.43 -13.47 16 9 C 0.25 6.63 5.16 -5.19 -0.03 6.60 16 10 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 14 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.14 2.47 5.42 -4.04 -0.02 2.44 16 19 C -0.16 -2.41 5.85 -90.62 -0.53 -2.94 16 20 C -0.18 -2.18 9.06 -26.69 -0.24 -2.42 16 21 C -0.18 -2.16 10.25 -26.69 -0.27 -2.44 16 22 C -0.18 -2.09 9.86 -26.73 -0.26 -2.36 16 23 C -0.16 -2.18 9.86 -26.73 -0.26 -2.44 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.11 7.55 -51.93 -0.39 0.72 16 28 H 0.04 0.52 7.88 -51.93 -0.41 0.11 16 29 H 0.08 1.17 7.61 -51.93 -0.40 0.77 16 30 H 0.10 1.56 5.66 -51.93 -0.29 1.26 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 35 H 0.06 0.95 6.32 -51.93 -0.33 0.62 16 36 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 0.94 8.03 -51.92 -0.42 0.52 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -33.04 361.90 -8.29 -41.33 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.63 Total: 2.02 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.14 Total: -6.36 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.31 Total: -39.76 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.25 Total: -19.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.04 -8.29 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519406308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.090 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds