Wall clock time and date at job start Tue Mar 31 2020 05:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46817 * 2 1 4 4 N 1.46503 * 109.47277 * 119.99791 * 2 1 3 5 5 C 1.46500 * 119.99970 * 119.25091 * 4 2 1 6 6 C 1.50702 * 109.47007 * 270.00447 * 5 4 2 7 7 H 1.07998 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99761 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00043 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99977 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47063 * 119.99973 * 10 8 6 13 13 H 1.48499 * 109.47118 * 239.99818 * 10 8 6 14 14 C 1.34773 * 119.99905 * 299.25559 * 4 2 1 15 15 O 1.21283 * 120.00008 * 5.28634 * 14 4 2 16 16 C 1.50698 * 119.99785 * 185.28846 * 14 4 2 17 17 C 1.53001 * 109.47049 * 185.88783 * 16 14 4 18 18 H 1.08998 * 110.63078 * 307.83465 * 17 16 14 19 19 C 1.55087 * 110.59968 * 70.71263 * 17 16 14 20 20 C 1.54883 * 102.34063 * 155.64720 * 19 17 16 21 21 C 1.51846 * 104.43136 * 322.36276 * 20 19 17 22 22 O 1.20761 * 126.34214 * 203.81301 * 21 20 19 23 23 C 1.51448 * 107.31687 * 23.79249 * 21 20 19 24 24 H 1.08997 * 109.98332 * 119.02935 * 23 21 20 25 25 C 1.52999 * 109.98300 * 240.29093 * 23 21 20 26 26 H 1.08997 * 109.47734 * 306.75331 * 1 2 3 27 27 H 1.08998 * 109.47115 * 66.76247 * 1 2 3 28 28 H 1.09001 * 109.46997 * 186.75663 * 1 2 3 29 29 H 1.08999 * 109.47409 * 239.99792 * 2 1 3 30 30 H 1.09005 * 109.47181 * 175.07458 * 3 2 1 31 31 H 1.08997 * 109.47089 * 295.07292 * 3 2 1 32 32 H 1.08996 * 109.47447 * 55.07349 * 3 2 1 33 33 H 1.09001 * 109.46917 * 30.00521 * 5 4 2 34 34 H 1.08994 * 109.47207 * 150.00106 * 5 4 2 35 35 H 0.96996 * 120.00038 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47338 * 65.89431 * 16 14 4 37 37 H 1.08995 * 109.47268 * 305.88727 * 16 14 4 38 38 H 1.09002 * 110.83842 * 37.42896 * 19 17 16 39 39 H 1.09002 * 110.99304 * 273.93420 * 19 17 16 40 40 H 1.09004 * 110.44159 * 203.62881 * 20 19 17 41 41 H 1.08997 * 110.44741 * 81.10550 * 20 19 17 42 42 H 1.09006 * 109.46869 * 58.03003 * 25 23 21 43 43 H 1.08992 * 109.47065 * 298.03270 * 25 23 21 44 44 H 1.08993 * 109.46938 * 178.02688 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8470 -1.8912 1.0619 6 6 1.9624 -3.1107 1.0265 7 1 0.8902 -3.0024 1.0974 8 6 2.5220 -4.3650 0.9046 9 7 3.8277 -4.4970 0.8187 10 14 1.4255 -5.8767 0.8614 11 1 0.0045 -5.4609 0.9749 12 1 1.6296 -6.5997 -0.4195 13 1 1.7711 -6.7713 1.9953 14 6 1.7052 -0.2214 2.4202 15 8 0.9418 0.7142 2.5340 16 6 2.3036 -0.8592 3.6474 17 6 1.6781 -0.2416 4.8997 18 1 1.7440 0.8459 4.8655 19 6 0.2025 -0.6939 5.0524 20 6 -0.0359 -0.5371 6.5747 21 6 1.2734 -0.9711 7.2095 22 8 1.4205 -1.3870 8.3336 23 6 2.3607 -0.7863 6.1715 24 1 3.1017 -0.0725 6.5314 25 6 3.0307 -2.1286 5.8715 26 1 -0.3634 0.6149 0.8233 27 1 -0.3633 0.4055 -0.9443 28 1 -0.3633 -1.0205 0.1209 29 1 1.8934 -0.5138 -0.8899 30 1 3.1264 1.4438 0.0882 31 1 1.7504 1.9302 -0.9308 32 1 1.6063 1.9812 0.8425 33 1 3.4233 -1.8334 0.1385 34 1 3.5271 -1.9601 1.9108 35 1 4.2213 -5.3793 0.7326 36 1 3.3802 -0.6887 3.6573 37 1 2.1056 -1.9309 3.6332 38 1 0.0818 -1.7330 4.7460 39 1 -0.4655 -0.0445 4.4865 40 1 -0.8501 -1.1842 6.9011 41 1 -0.2524 0.5023 6.8211 42 1 2.2808 -2.8394 5.5243 43 1 3.5012 -2.5104 6.7774 44 1 3.7873 -1.9923 5.0988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527239654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:04 Heat of formation + Delta-G solvation = -97.978332 kcal Electronic energy + Delta-G solvation = -23537.628884 eV Core-core repulsion = 20261.138926 eV Total energy + Delta-G solvation = -3276.489958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20006 -39.15608 -36.76282 -35.22181 -33.25801 -31.87476 -31.26990 -29.48310 -27.00424 -26.61428 -25.06514 -24.70685 -22.89460 -21.65363 -20.05457 -18.63627 -17.91556 -16.75506 -16.38833 -15.90217 -15.46830 -15.20803 -14.74230 -14.58691 -14.40773 -13.83275 -13.36877 -13.12445 -12.97654 -12.64832 -12.53777 -12.32119 -12.31035 -11.88401 -11.79064 -11.74550 -11.50581 -11.40534 -11.15073 -10.96036 -10.93429 -10.72891 -10.65817 -10.47171 -10.36956 -10.19480 -10.03447 -9.71122 -9.28399 -8.75328 -8.56828 -7.68325 -6.21602 -4.28886 1.98820 3.18580 3.27999 3.30863 3.45838 3.91642 4.19809 4.30419 4.57854 4.84114 5.00506 5.11803 5.22626 5.28502 5.39452 5.50293 5.53630 5.65851 5.70853 5.73271 5.83579 5.84845 5.93860 6.01480 6.07471 6.10101 6.19061 6.24531 6.27043 6.35208 6.37238 6.44835 6.45731 6.64948 6.73277 6.80994 6.86307 7.16554 7.55100 7.59868 7.74897 8.03495 8.39577 8.78606 9.07429 9.39799 10.84800 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.006865 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.000315 B = 4077.436615 C = 5543.928417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.535 4.535 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.520 3.480 15 O -0.571 6.571 16 C -0.132 4.132 17 C -0.065 4.065 18 H 0.088 0.912 19 C -0.112 4.112 20 C -0.183 4.183 21 C 0.375 3.625 22 O -0.454 6.454 23 C -0.150 4.150 24 H 0.098 0.902 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 7.911 4.682 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.324 5.324 5 C 0.117 3.883 6 C -0.573 4.573 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.308 3.692 15 O -0.453 6.453 16 C -0.172 4.172 17 C -0.084 4.084 18 H 0.106 0.894 19 C -0.149 4.149 20 C -0.221 4.221 21 C 0.251 3.749 22 O -0.327 6.327 23 C -0.169 4.169 24 H 0.116 0.884 25 C -0.198 4.198 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.972 8.007 5.285 10.044 hybrid contribution -0.380 -1.122 -0.314 1.226 sum -3.352 6.885 4.972 9.130 Atomic orbital electron populations 1.22157 0.95701 1.02525 1.01597 1.20801 0.94229 0.92156 0.88404 1.22175 1.00729 0.97085 1.02184 1.48336 1.51279 1.28516 1.04306 1.19447 0.90046 0.80496 0.98349 1.21540 0.93814 0.90727 1.51266 0.92041 1.24930 0.94993 0.99008 0.94815 1.69923 1.09660 1.23888 1.49446 0.86525 0.80899 0.82789 0.77811 1.19662 1.20870 1.20817 1.20408 0.81011 0.82861 0.84875 1.90512 1.37194 1.30573 1.86976 1.21801 1.00803 1.02969 0.91590 1.21690 0.94420 1.00649 0.91670 0.89369 1.22522 0.96843 1.02554 0.92982 1.22935 0.97637 1.03458 0.98066 1.25104 0.92619 0.70791 0.86396 1.90377 1.86937 1.35346 1.20056 1.22345 0.98267 1.00140 0.96191 0.88365 1.21775 1.01147 0.94741 1.02182 0.90802 0.93376 0.92515 0.90151 0.93230 0.92796 0.90957 0.94916 0.94357 0.92590 0.89333 0.87356 0.90828 0.89479 0.89388 0.88039 0.91731 0.92534 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.01 37.16 0.33 -2.42 16 2 C 0.15 2.63 3.28 -67.93 -0.22 2.41 16 3 C -0.16 -2.55 9.03 37.16 0.34 -2.22 16 4 N -0.59 -11.62 2.41 -167.47 -0.40 -12.03 16 5 C 0.24 5.30 4.86 -5.19 -0.03 5.27 16 6 C -0.53 -13.25 9.26 -34.44 -0.32 -13.57 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -23.73 13.29 55.43 0.74 -23.00 16 10 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.52 9.63 6.85 -10.99 -0.08 9.55 16 15 O -0.57 -10.95 11.38 5.56 0.06 -10.89 16 16 C -0.13 -2.12 2.31 -27.88 -0.06 -2.18 16 17 C -0.07 -0.89 2.39 -88.85 -0.21 -1.10 16 18 H 0.09 1.20 7.81 -51.93 -0.41 0.80 16 19 C -0.11 -1.49 5.84 -24.63 -0.14 -1.64 16 20 C -0.18 -2.14 6.72 -26.32 -0.18 -2.32 16 21 C 0.38 5.10 7.18 -28.10 -0.20 4.89 16 22 O -0.45 -7.46 17.99 6.00 0.11 -7.35 16 23 C -0.15 -1.90 3.36 -90.74 -0.30 -2.20 16 24 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 25 C -0.14 -1.89 7.99 37.16 0.30 -1.59 16 26 H 0.07 1.33 6.28 -51.93 -0.33 1.00 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.44 7.79 -51.93 -0.40 1.04 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.22 6.45 -51.93 -0.33 0.88 16 33 H 0.03 0.78 7.91 -51.93 -0.41 0.37 16 34 H 0.04 0.87 6.55 -51.93 -0.34 0.53 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.09 1.34 7.08 -51.93 -0.37 0.97 16 37 H 0.11 1.91 6.36 -51.93 -0.33 1.58 16 38 H 0.07 1.05 7.96 -51.93 -0.41 0.63 16 39 H 0.09 1.24 7.56 -51.93 -0.39 0.85 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.92 7.65 -51.93 -0.40 0.52 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.01 6.57 -51.93 -0.34 0.67 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -27.50 346.69 -7.56 -35.06 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.39 Total: 3.47 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.88 Total: -5.54 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.33 Total: -35.02 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.24 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.50 -7.56 -35.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527239654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.922 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds