Wall clock time and date at job start Tue Mar 31 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 N 1.46499 * 109.47482 * 120.00246 * 2 1 3 5 5 C 1.46499 * 119.99972 * 124.36874 * 4 2 1 6 6 C 1.50703 * 109.47278 * 270.00164 * 5 4 2 7 7 H 1.07997 * 120.00195 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99720 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00263 * 0.28187 * 8 6 5 10 10 Si 1.86801 * 119.99588 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47323 * 60.00153 * 10 8 6 12 12 H 1.48506 * 109.47032 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47200 * 299.99837 * 10 8 6 14 14 C 1.34778 * 119.99815 * 304.37500 * 4 2 1 15 15 O 1.21280 * 119.99903 * 354.54829 * 14 4 2 16 16 C 1.50703 * 119.99767 * 174.55163 * 14 4 2 17 17 C 1.53000 * 109.46672 * 184.87472 * 16 14 4 18 18 H 1.08997 * 110.51284 * 54.29445 * 17 16 14 19 19 C 1.54986 * 110.56733 * 291.53949 * 17 16 14 20 20 C 1.55056 * 102.25732 * 204.46510 * 19 17 16 21 21 C 1.51845 * 104.52528 * 37.43165 * 20 19 17 22 22 O 1.20761 * 126.33978 * 156.32848 * 21 20 19 23 23 C 1.51446 * 107.31858 * 336.31444 * 21 20 19 24 24 H 1.09001 * 110.01675 * 119.72612 * 23 21 20 25 25 C 1.53007 * 109.97923 * 241.00906 * 23 21 20 26 26 H 1.08994 * 109.47172 * 295.20596 * 1 2 3 27 27 H 1.08993 * 109.46966 * 55.20745 * 1 2 3 28 28 H 1.08999 * 109.46644 * 175.20418 * 1 2 3 29 29 H 1.09002 * 109.47268 * 240.00375 * 2 1 3 30 30 H 1.08998 * 109.47369 * 184.91538 * 3 2 1 31 31 H 1.09003 * 109.47558 * 304.92101 * 3 2 1 32 32 H 1.09007 * 109.46797 * 64.91174 * 3 2 1 33 33 H 1.08998 * 109.47052 * 150.00168 * 5 4 2 34 34 H 1.09003 * 109.47058 * 30.00590 * 5 4 2 35 35 H 0.96993 * 119.99712 * 359.71651 * 9 8 6 36 36 H 1.09001 * 109.46984 * 304.87171 * 16 14 4 37 37 H 1.08995 * 109.47140 * 64.87244 * 16 14 4 38 38 H 1.09001 * 110.83250 * 322.56457 * 19 17 16 39 39 H 1.08998 * 110.83105 * 86.14483 * 19 17 16 40 40 H 1.08998 * 110.31053 * 278.70608 * 20 19 17 41 41 H 1.09002 * 110.58662 * 156.29293 * 20 19 17 42 42 H 1.08999 * 109.46402 * 177.41168 * 25 23 21 43 43 H 1.08999 * 109.47096 * 297.41316 * 25 23 21 44 44 H 1.08997 * 109.47108 * 57.41928 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.9379 -1.8235 1.0637 6 6 2.1475 -3.1021 0.9558 7 1 1.0683 -3.0737 0.9827 8 6 2.8023 -4.3080 0.8217 9 7 4.1167 -4.3430 0.7935 10 14 1.8225 -5.8927 0.6872 11 1 0.9397 -5.8293 -0.5051 12 1 2.7546 -7.0410 0.5531 13 1 0.9945 -6.0678 1.9074 14 6 1.6218 -0.2839 2.4183 15 8 0.9408 0.7130 2.5342 16 6 2.0245 -1.0678 3.6408 17 6 1.3492 -0.4686 4.8760 18 1 0.2702 -0.4124 4.7319 19 6 1.9307 0.9337 5.1881 20 6 1.6465 1.0776 6.7056 21 6 1.8747 -0.3137 7.2694 22 8 2.1546 -0.5857 8.4122 23 6 1.6859 -1.2971 6.1332 24 1 2.6040 -1.8620 5.9723 25 6 0.5341 -2.2519 6.4541 26 1 -0.3633 0.4376 0.9298 27 1 -0.3633 0.5864 -0.8439 28 1 -0.3632 -1.0241 -0.0859 29 1 1.8934 -0.5138 -0.8900 30 1 3.1264 1.4438 -0.0881 31 1 1.6065 1.9812 -0.8426 32 1 1.7503 1.9303 0.9308 33 1 3.5859 -1.8697 1.9389 34 1 3.5457 -1.6953 0.1680 35 1 4.6253 -3.5201 0.8629 36 1 1.7144 -2.1063 3.5249 37 1 3.1069 -1.0230 3.7608 38 1 3.0023 0.9616 4.9911 39 1 1.4106 1.7044 4.6192 40 1 0.6153 1.3904 6.8695 41 1 2.3361 1.7898 7.1588 42 1 0.3757 -2.9257 5.6122 43 1 0.7806 -2.8326 7.3430 44 1 -0.3742 -1.6774 6.6356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527239655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:06 Heat of formation + Delta-G solvation = -103.680928 kcal Electronic energy + Delta-G solvation = -23363.812240 eV Core-core repulsion = 20087.074999 eV Total energy + Delta-G solvation = -3276.737241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19296 -39.27873 -36.73883 -35.33998 -33.54318 -31.81994 -31.41660 -29.86605 -26.72715 -26.54243 -24.94235 -24.52510 -22.94128 -21.73341 -20.30810 -19.03848 -18.17567 -17.17999 -16.28285 -15.84794 -15.55481 -15.34463 -14.72725 -14.36545 -13.85042 -13.80051 -13.73141 -13.47193 -13.10999 -12.92809 -12.56976 -12.52105 -12.36354 -12.12138 -11.92372 -11.76206 -11.63349 -11.38677 -11.19655 -10.92463 -10.84876 -10.80386 -10.74924 -10.58349 -10.37293 -10.30166 -10.19297 -9.37535 -9.27369 -8.78024 -8.54988 -7.70123 -6.54938 -4.31677 1.93759 3.31533 3.33774 3.36200 3.53361 3.80348 4.14729 4.38498 4.53732 4.73574 4.93995 5.15795 5.16736 5.21424 5.33134 5.43074 5.50775 5.57464 5.58993 5.61617 5.68093 5.77303 5.86666 5.96050 6.01006 6.03046 6.06895 6.10514 6.15932 6.25580 6.31559 6.36140 6.42604 6.52091 6.60400 6.66787 6.71238 6.83977 7.45396 7.50101 7.82054 8.11146 8.39618 8.62044 8.94930 9.39805 10.80678 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.006263 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.555060 B = 4469.349076 C = 5984.823030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 C -0.165 4.165 4 N -0.589 5.589 5 C 0.228 3.772 6 C -0.615 4.615 7 H 0.055 0.945 8 C 0.024 3.976 9 N -0.905 5.905 10 Si 1.066 2.934 11 H -0.287 1.287 12 H -0.281 1.281 13 H -0.286 1.286 14 C 0.521 3.479 15 O -0.567 6.567 16 C -0.131 4.131 17 C -0.064 4.064 18 H 0.088 0.912 19 C -0.110 4.110 20 C -0.184 4.184 21 C 0.375 3.625 22 O -0.453 6.453 23 C -0.153 4.153 24 H 0.106 0.894 25 C -0.137 4.137 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 8.256 5.122 10.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 C -0.223 4.223 4 N -0.319 5.319 5 C 0.107 3.893 6 C -0.654 4.654 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.540 5.540 10 Si 0.894 3.106 11 H -0.214 1.214 12 H -0.206 1.206 13 H -0.213 1.213 14 C 0.310 3.690 15 O -0.449 6.449 16 C -0.170 4.170 17 C -0.083 4.083 18 H 0.107 0.893 19 C -0.148 4.148 20 C -0.221 4.221 21 C 0.250 3.750 22 O -0.327 6.327 23 C -0.172 4.172 24 H 0.123 0.877 25 C -0.194 4.194 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.784 6.955 5.594 10.127 hybrid contribution -0.004 1.433 -0.160 1.442 sum -4.788 8.388 5.434 11.082 Atomic orbital electron populations 1.22150 0.95589 1.01791 1.02771 1.20807 0.94266 0.92223 0.88216 1.22198 1.00310 0.96903 1.02878 1.48123 1.46566 1.32611 1.04606 1.19497 0.88818 0.83940 0.97041 1.22299 0.94822 0.92189 1.56047 0.92644 1.25789 0.96742 1.02154 0.93420 1.70836 1.05915 1.31554 1.45682 0.83562 0.74915 0.75381 0.76740 1.21365 1.20648 1.21259 1.20356 0.79515 0.84379 0.84738 1.90502 1.40778 1.26871 1.86759 1.21709 1.01625 1.01826 0.91861 1.21722 1.01215 0.93719 0.91664 0.89331 1.22552 1.01271 0.98200 0.92749 1.22971 1.03947 0.96832 0.98394 1.25086 0.69151 0.92918 0.87813 1.90380 1.36250 1.85236 1.20790 1.22393 1.01789 0.97738 0.95288 0.87656 1.21671 0.96520 0.98728 1.02486 0.90459 0.92979 0.92745 0.90212 0.93437 0.92731 0.90656 0.95523 0.95896 0.92147 0.87570 0.89574 0.91421 0.88921 0.88018 0.89449 0.90926 0.92192 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.13 37.16 0.34 -2.45 16 2 C 0.15 2.66 3.27 -67.93 -0.22 2.44 16 3 C -0.16 -2.59 9.24 37.16 0.34 -2.24 16 4 N -0.59 -11.61 2.41 -167.47 -0.40 -12.01 16 5 C 0.23 5.10 4.17 -5.19 -0.02 5.08 16 6 C -0.62 -15.37 8.94 -34.44 -0.31 -15.68 16 7 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 8 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 9 N -0.90 -24.98 13.65 55.43 0.76 -24.22 16 10 Si 1.07 23.38 29.90 -169.99 -5.08 18.29 16 11 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.01 7.11 56.52 0.40 -5.60 16 14 C 0.52 9.68 6.89 -10.98 -0.08 9.60 16 15 O -0.57 -10.72 10.71 5.56 0.06 -10.66 16 16 C -0.13 -2.14 3.63 -27.88 -0.10 -2.24 16 17 C -0.06 -0.88 2.02 -88.90 -0.18 -1.06 16 18 H 0.09 1.25 7.74 -51.93 -0.40 0.85 16 19 C -0.11 -1.38 5.70 -24.60 -0.14 -1.52 16 20 C -0.18 -2.04 6.72 -26.23 -0.18 -2.22 16 21 C 0.37 4.98 7.18 -28.10 -0.20 4.78 16 22 O -0.45 -7.32 17.99 6.00 0.11 -7.21 16 23 C -0.15 -1.97 3.01 -90.73 -0.27 -2.24 16 24 H 0.11 1.38 7.83 -51.93 -0.41 0.98 16 25 C -0.14 -1.66 9.08 37.16 0.34 -1.32 16 26 H 0.08 1.40 5.91 -51.93 -0.31 1.09 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.46 7.83 -51.93 -0.41 1.05 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.28 6.21 -51.93 -0.32 0.96 16 33 H 0.03 0.61 6.48 -51.93 -0.34 0.27 16 34 H 0.02 0.54 7.83 -51.93 -0.41 0.14 16 35 H 0.27 7.29 7.22 -40.82 -0.29 6.99 16 36 H 0.11 1.91 7.63 -51.93 -0.40 1.52 16 37 H 0.09 1.37 7.41 -51.93 -0.38 0.99 16 38 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16 39 H 0.09 1.25 7.11 -51.93 -0.37 0.88 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -28.04 348.71 -7.54 -35.58 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.46 Total: 3.51 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.78 Total: -8.54 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.35 Total: -36.23 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.17 Total: -17.88 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.08 Total: 18.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.04 -7.54 -35.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527239655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.102 kcal (2) G-P(sol) polarization free energy of solvation -28.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds