Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99659 * 2 1 4 4 C 1.53003 * 109.46879 * 125.00424 * 3 2 1 5 5 O 1.42904 * 109.46834 * 179.97438 * 4 3 2 6 6 C 1.42903 * 113.99808 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46938 * 29.99928 * 6 5 4 8 8 C 1.52997 * 109.47042 * 269.99949 * 6 5 4 9 9 C 1.50697 * 109.47129 * 149.99823 * 6 5 4 10 10 O 1.21280 * 119.99766 * 12.46106 * 9 6 5 11 11 N 1.34776 * 119.99839 * 192.46053 * 9 6 5 12 12 C 1.46922 * 120.63321 * 355.23918 * 11 9 6 13 13 C 1.53191 * 108.89254 * 126.29713 * 12 11 9 14 14 C 1.53353 * 109.14845 * 54.58279 * 13 12 11 15 15 C 1.50701 * 109.40714 * 178.68221 * 14 13 12 16 16 H 1.07997 * 120.00189 * 120.12171 * 15 14 13 17 17 C 1.37879 * 119.99759 * 300.11570 * 15 14 13 18 18 N 1.31512 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99689 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47224 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47500 * 120.00193 * 19 17 15 22 22 H 1.48504 * 109.46672 * 240.00142 * 19 17 15 23 23 C 1.53044 * 109.60359 * 298.71159 * 14 13 12 24 24 C 1.46927 * 120.63071 * 175.22115 * 11 9 6 25 25 H 1.08005 * 120.00019 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00205 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00124 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47486 * 5.00057 * 3 2 1 29 29 H 1.09000 * 109.47369 * 245.00257 * 3 2 1 30 30 H 1.08997 * 109.47361 * 59.99557 * 4 3 2 31 31 H 1.09002 * 109.46844 * 299.99307 * 4 3 2 32 32 H 1.09000 * 109.47425 * 65.38683 * 8 6 5 33 33 H 1.09001 * 109.47316 * 185.38850 * 8 6 5 34 34 H 1.08999 * 109.47225 * 305.38541 * 8 6 5 35 35 H 1.09002 * 109.58889 * 246.15676 * 12 11 9 36 36 H 1.08997 * 109.58793 * 6.44269 * 12 11 9 37 37 H 1.09000 * 109.49878 * 174.65684 * 13 12 11 38 38 H 1.08994 * 109.49950 * 294.75933 * 13 12 11 39 39 H 1.08993 * 109.43252 * 58.75314 * 14 13 12 40 40 H 0.97002 * 119.99571 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.49905 * 301.41626 * 23 14 13 42 42 H 1.09004 * 109.52324 * 181.34477 * 23 14 13 43 43 H 1.09005 * 109.58655 * 353.41415 * 24 11 9 44 44 H 1.08993 * 109.59264 * 113.69464 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7499 2.5705 1.1812 6 6 4.6886 2.6997 2.2509 7 1 5.0648 1.7141 2.5252 8 6 4.0003 3.3373 3.4594 9 6 5.8366 3.5705 1.8094 10 8 5.7497 4.2154 0.7859 11 7 6.9597 3.6325 2.5518 12 6 7.0413 2.9404 3.8452 13 6 8.2789 2.0376 3.8475 14 6 9.5146 2.8773 3.5016 15 6 10.7404 2.0012 3.5339 16 1 11.3437 1.8837 2.6459 17 6 11.0917 1.3498 4.6972 18 7 10.3567 1.4925 5.7784 19 14 12.6115 0.2644 4.7374 20 1 13.2596 0.2705 3.4014 21 1 13.5635 0.7829 5.7523 22 1 12.2191 -1.1237 5.0904 23 6 9.3530 3.4767 2.1027 24 6 8.1259 4.3934 2.0830 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4028 -0.9314 30 1 3.7399 0.5066 1.0920 31 1 2.4772 1.2356 2.1130 32 1 3.2321 2.6628 3.8377 33 1 4.7370 3.5236 4.2408 34 1 3.5412 4.2797 3.1607 35 1 7.1223 3.6736 4.6477 36 1 6.1471 2.3348 3.9926 37 1 8.4024 1.5920 4.8346 38 1 8.1557 1.2494 3.1048 39 1 9.6229 3.6804 4.2305 40 1 10.6041 1.0345 6.5969 41 1 9.2200 2.6749 1.3765 42 1 10.2423 4.0536 1.8487 43 1 7.9485 4.7446 1.0665 44 1 8.2939 5.2466 2.7401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541048530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -74.942496 kcal Electronic energy + Delta-G solvation = -22553.699880 eV Core-core repulsion = 19278.208831 eV Total energy + Delta-G solvation = -3275.491049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01664 -38.05907 -36.65509 -35.24252 -33.63078 -32.17980 -30.74635 -29.98828 -29.04223 -26.40040 -24.51096 -23.17746 -22.54076 -22.18843 -20.21569 -19.76370 -18.46423 -17.25489 -16.64927 -16.22110 -15.86326 -15.45225 -15.14975 -14.63102 -14.53503 -14.06075 -13.53554 -13.39556 -13.18146 -12.95968 -12.68413 -12.67126 -12.39059 -12.23095 -12.09826 -11.58888 -11.38809 -11.33945 -11.24329 -11.12913 -10.98553 -10.64190 -10.41960 -10.15778 -9.87952 -9.66744 -9.60481 -9.21644 -9.19885 -8.91880 -8.42106 -8.03005 -6.07213 -4.12999 1.96570 2.91602 3.08231 3.24504 3.33304 3.37531 3.90770 4.37847 4.68115 4.71671 4.84491 4.91596 5.02136 5.07289 5.19195 5.22494 5.27844 5.49793 5.55366 5.59270 5.62365 5.74922 5.80319 5.85079 5.92568 6.02465 6.03787 6.13241 6.26489 6.34863 6.41822 6.47759 6.62210 6.84001 6.97601 7.06026 7.13506 7.24242 7.62282 7.87077 7.88241 7.99248 8.36169 8.55229 8.90656 9.52339 10.98369 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.003591 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.562467 B = 7796.305852 C = 8381.167453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C -0.093 4.093 4 C 0.063 3.937 5 O -0.359 6.359 6 C 0.073 3.927 7 H 0.086 0.914 8 C -0.174 4.174 9 C 0.514 3.486 10 O -0.539 6.539 11 N -0.599 5.599 12 C 0.098 3.902 13 C -0.125 4.125 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.114 3.886 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.039 0.961 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 -1.066 -4.240 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.130 4.130 4 C -0.014 4.014 5 O -0.277 6.277 6 C 0.012 3.988 7 H 0.103 0.897 8 C -0.231 4.231 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.333 5.333 12 C -0.024 4.024 13 C -0.163 4.163 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.162 4.162 24 C -0.008 4.008 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.539 -0.632 -4.740 16.258 hybrid contribution 0.899 -1.010 0.441 1.422 sum -14.640 -1.642 -4.299 15.346 Atomic orbital electron populations 1.23883 0.95866 1.01959 1.01097 1.22840 0.96019 0.98131 0.99907 1.20640 0.97881 0.95724 0.98748 1.22523 0.94138 0.86463 0.98256 1.88005 1.53869 1.37001 1.48861 1.21884 0.89322 0.99405 0.88224 0.89651 1.22327 1.01662 1.02206 0.96953 1.20228 0.83171 0.82640 0.83928 1.90650 1.81132 1.44692 1.25112 1.48175 1.13062 1.51002 1.21056 1.22182 1.00691 0.96055 0.83480 1.22095 0.92630 0.97292 1.04309 1.18694 0.93168 0.94758 0.90420 1.21247 1.09234 1.27794 0.96606 0.92635 1.24960 0.96743 0.96650 0.95643 1.69842 1.38425 1.43635 1.01206 0.86563 0.83212 0.80338 0.78053 1.19832 1.21039 1.21068 1.22013 0.94906 0.98114 1.01125 1.21698 0.85120 0.94095 0.99905 0.88367 0.88462 0.87124 0.90601 0.89900 0.93016 0.93100 0.91482 0.90226 0.91158 0.91624 0.91381 0.87682 0.94255 0.95382 0.93034 0.92952 0.92014 0.90372 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 14.32 29.02 0.42 -1.03 16 2 C -0.15 -1.28 9.52 -36.02 -0.34 -1.62 16 3 C -0.09 -0.93 6.03 -27.88 -0.17 -1.10 16 4 C 0.06 0.71 5.73 37.16 0.21 0.93 16 5 O -0.36 -5.46 9.55 -54.83 -0.52 -5.98 16 6 C 0.07 1.07 2.28 -27.89 -0.06 1.00 16 7 H 0.09 1.14 6.88 -51.93 -0.36 0.79 16 8 C -0.17 -2.08 9.10 37.16 0.34 -1.74 16 9 C 0.51 9.40 7.04 -10.99 -0.08 9.32 16 10 O -0.54 -11.67 15.98 -14.04 -0.22 -11.89 16 11 N -0.60 -10.77 2.97 -172.78 -0.51 -11.29 16 12 C 0.10 1.68 5.19 -3.71 -0.02 1.66 16 13 C -0.12 -2.66 5.17 -26.45 -0.14 -2.79 16 14 C 0.05 1.12 2.07 -91.57 -0.19 0.93 16 15 C -0.51 -13.37 8.56 -34.44 -0.29 -13.67 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -23.92 11.31 55.43 0.63 -23.30 16 19 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.12 -2.50 5.30 -26.61 -0.14 -2.65 16 24 C 0.11 2.09 6.42 -3.71 -0.02 2.07 16 25 H 0.10 0.62 8.06 -52.48 -0.42 0.19 16 26 H 0.10 0.69 7.84 -52.48 -0.41 0.28 16 27 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.05 0.50 8.00 -51.93 -0.42 0.09 16 32 H 0.07 0.66 8.00 -51.93 -0.42 0.24 16 33 H 0.08 0.92 5.97 -51.93 -0.31 0.61 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.98 4.73 -51.93 -0.25 0.74 16 37 H 0.11 2.48 6.05 -51.93 -0.31 2.17 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.45 7.03 -51.93 -0.37 1.09 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -29.73 350.38 -8.39 -38.12 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.43 Total: 0.70 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.59 Total: -7.18 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.11 Total: -34.58 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.75 Total: -17.87 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.73 -8.39 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541048530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.819 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds