Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99659 * 2 1 4 4 C 1.53003 * 109.46879 * 125.00424 * 3 2 1 5 5 O 1.42904 * 109.46834 * 179.97438 * 4 3 2 6 6 C 1.42903 * 113.99808 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46938 * 29.99928 * 6 5 4 8 8 C 1.52997 * 109.47042 * 269.99949 * 6 5 4 9 9 C 1.50697 * 109.47129 * 149.99823 * 6 5 4 10 10 O 1.21280 * 119.99766 * 12.46106 * 9 6 5 11 11 N 1.34776 * 119.99839 * 192.46053 * 9 6 5 12 12 C 1.46922 * 120.63321 * 355.23918 * 11 9 6 13 13 C 1.53191 * 108.89254 * 126.29713 * 12 11 9 14 14 C 1.53353 * 109.14845 * 54.58279 * 13 12 11 15 15 C 1.50701 * 109.40714 * 178.68221 * 14 13 12 16 16 H 1.07997 * 120.00189 * 120.12171 * 15 14 13 17 17 C 1.37879 * 119.99759 * 300.11570 * 15 14 13 18 18 N 1.31512 * 120.00137 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99689 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47224 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47500 * 120.00193 * 19 17 15 22 22 H 1.48504 * 109.46672 * 240.00142 * 19 17 15 23 23 C 1.53044 * 109.60359 * 298.71159 * 14 13 12 24 24 C 1.46927 * 120.63071 * 175.22115 * 11 9 6 25 25 H 1.08005 * 120.00019 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.00205 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.00124 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47486 * 5.00057 * 3 2 1 29 29 H 1.09000 * 109.47369 * 245.00257 * 3 2 1 30 30 H 1.08997 * 109.47361 * 59.99557 * 4 3 2 31 31 H 1.09002 * 109.46844 * 299.99307 * 4 3 2 32 32 H 1.09000 * 109.47425 * 65.38683 * 8 6 5 33 33 H 1.09001 * 109.47316 * 185.38850 * 8 6 5 34 34 H 1.08999 * 109.47225 * 305.38541 * 8 6 5 35 35 H 1.09002 * 109.58889 * 246.15676 * 12 11 9 36 36 H 1.08997 * 109.58793 * 6.44269 * 12 11 9 37 37 H 1.09000 * 109.49878 * 174.65684 * 13 12 11 38 38 H 1.08994 * 109.49950 * 294.75933 * 13 12 11 39 39 H 1.08993 * 109.43252 * 58.75314 * 14 13 12 40 40 H 0.97002 * 119.99571 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.49905 * 301.41626 * 23 14 13 42 42 H 1.09004 * 109.52324 * 181.34477 * 23 14 13 43 43 H 1.09005 * 109.58655 * 353.41415 * 24 11 9 44 44 H 1.08993 * 109.59264 * 113.69464 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7499 2.5705 1.1812 6 6 4.6886 2.6997 2.2509 7 1 5.0648 1.7141 2.5252 8 6 4.0003 3.3373 3.4594 9 6 5.8366 3.5705 1.8094 10 8 5.7497 4.2154 0.7859 11 7 6.9597 3.6325 2.5518 12 6 7.0413 2.9404 3.8452 13 6 8.2789 2.0376 3.8475 14 6 9.5146 2.8773 3.5016 15 6 10.7404 2.0012 3.5339 16 1 11.3437 1.8837 2.6459 17 6 11.0917 1.3498 4.6972 18 7 10.3567 1.4925 5.7784 19 14 12.6115 0.2644 4.7374 20 1 13.2596 0.2705 3.4014 21 1 13.5635 0.7829 5.7523 22 1 12.2191 -1.1237 5.0904 23 6 9.3530 3.4767 2.1027 24 6 8.1259 4.3934 2.0830 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4028 -0.9314 30 1 3.7399 0.5066 1.0920 31 1 2.4772 1.2356 2.1130 32 1 3.2321 2.6628 3.8377 33 1 4.7370 3.5236 4.2408 34 1 3.5412 4.2797 3.1607 35 1 7.1223 3.6736 4.6477 36 1 6.1471 2.3348 3.9926 37 1 8.4024 1.5920 4.8346 38 1 8.1557 1.2494 3.1048 39 1 9.6229 3.6804 4.2305 40 1 10.6041 1.0345 6.5969 41 1 9.2200 2.6749 1.3765 42 1 10.2423 4.0536 1.8487 43 1 7.9485 4.7446 1.0665 44 1 8.2939 5.2466 2.7401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541048530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -90.455618 kcal Electronic energy + Delta-G solvation = -22554.372580 eV Core-core repulsion = 19278.208831 eV Total energy + Delta-G solvation = -3276.163749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41022 -39.23635 -38.19310 -36.01610 -35.38919 -33.61902 -32.27016 -31.43263 -29.88791 -28.13470 -25.87554 -24.31318 -24.01900 -23.56185 -21.51660 -20.69714 -19.94557 -18.68441 -18.16410 -17.68184 -17.01092 -16.67586 -16.43089 -16.15582 -15.74429 -15.33277 -14.91715 -14.70236 -14.59298 -14.26813 -14.15060 -13.84341 -13.65252 -13.37166 -13.23504 -13.19175 -12.90689 -12.77996 -12.44369 -12.25722 -12.13958 -12.07368 -11.98164 -11.93173 -11.47942 -11.04845 -11.01560 -10.76736 -10.46862 -10.35109 -10.26034 -9.58560 -8.07510 -6.19872 1.33479 1.40545 1.44470 1.52325 1.53977 1.81971 2.44770 2.79353 3.19255 3.45043 3.83366 3.93751 4.06220 4.11457 4.15734 4.23721 4.26058 4.34018 4.45092 4.45744 4.47516 4.55606 4.63627 4.69512 4.78189 4.85153 4.89220 4.97419 5.03643 5.11192 5.17268 5.18628 5.24129 5.42354 5.51729 5.65675 5.73838 5.85666 5.99206 6.09545 6.13512 6.39716 6.46650 6.89032 7.12267 7.47667 8.96106 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.003591 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.562467 B = 7796.305852 C = 8381.167453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.164 4.164 3 C -0.090 4.090 4 C 0.058 3.942 5 O -0.385 6.385 6 C 0.075 3.925 7 H 0.101 0.899 8 C -0.168 4.168 9 C 0.509 3.491 10 O -0.578 6.578 11 N -0.600 5.600 12 C 0.108 3.892 13 C -0.116 4.116 14 C 0.045 3.955 15 C -0.533 4.533 16 H 0.045 0.955 17 C 0.019 3.981 18 N -0.909 5.909 19 Si 0.947 3.053 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.113 4.113 24 C 0.118 3.882 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.029 0.971 39 H 0.006 0.994 40 H 0.262 0.738 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.839 -1.944 -3.638 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.182 4.182 3 C -0.127 4.127 4 C -0.018 4.018 5 O -0.305 6.305 6 C 0.014 3.986 7 H 0.119 0.881 8 C -0.225 4.225 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.333 5.333 12 C -0.013 4.013 13 C -0.155 4.155 14 C 0.026 3.974 15 C -0.572 4.572 16 H 0.063 0.937 17 C -0.180 4.180 18 N -0.549 5.549 19 Si 0.773 3.227 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.205 1.205 23 C -0.151 4.151 24 C -0.005 4.005 25 H 0.132 0.868 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.024 0.976 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.920 -1.518 -4.127 17.482 hybrid contribution 1.324 -0.738 0.221 1.532 sum -15.596 -2.256 -3.906 16.235 Atomic orbital electron populations 1.24079 0.95622 1.02886 0.99340 1.22808 0.96342 0.97549 1.01460 1.20612 0.97630 0.96740 0.97761 1.22747 0.94286 0.85120 0.99648 1.87981 1.54155 1.38934 1.49388 1.21936 0.88401 0.99351 0.88908 0.88131 1.22315 1.02245 1.02329 0.95645 1.20980 0.83827 0.82372 0.83104 1.90626 1.81937 1.46459 1.26779 1.48226 1.12991 1.50766 1.21307 1.22114 1.00061 0.95869 0.83268 1.21869 0.93755 0.97371 1.02504 1.18672 0.93314 0.94031 0.91357 1.21551 1.10483 1.28670 0.96459 0.93661 1.25592 0.99158 0.97759 0.95454 1.69936 1.39399 1.44101 1.01463 0.85681 0.80255 0.78905 0.77827 1.19905 1.20736 1.20532 1.21858 0.96204 0.98041 0.99034 1.21595 0.84576 0.94038 1.00259 0.86837 0.88166 0.86350 0.90778 0.91239 0.92629 0.91168 0.88691 0.89665 0.91915 0.90804 0.87972 0.89832 0.95233 0.97601 0.92887 0.94056 0.91713 0.90562 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 14.32 67.78 0.97 -1.38 16 2 C -0.16 -2.48 9.52 25.65 0.24 -2.24 16 3 C -0.09 -1.72 6.03 29.85 0.18 -1.54 16 4 C 0.06 1.21 5.73 71.98 0.41 1.62 16 5 O -0.39 -11.20 9.55 -130.24 -1.24 -12.45 16 6 C 0.07 2.04 2.28 29.85 0.07 2.11 16 7 H 0.10 2.41 6.88 -2.39 -0.02 2.40 16 8 C -0.17 -3.53 9.10 71.98 0.65 -2.87 16 9 C 0.51 18.09 7.04 87.66 0.62 18.71 16 10 O -0.58 -25.01 15.98 15.71 0.25 -24.76 16 11 N -0.60 -20.92 2.97 -818.94 -2.43 -23.36 16 12 C 0.11 3.54 5.19 86.36 0.45 3.99 16 13 C -0.12 -4.92 5.17 30.78 0.16 -4.76 16 14 C 0.04 2.10 2.07 -11.41 -0.02 2.08 16 15 C -0.53 -28.27 8.56 25.60 0.22 -28.05 16 16 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 17 C 0.02 1.03 5.30 84.66 0.45 1.48 16 18 N -0.91 -48.79 11.31 21.45 0.24 -48.55 16 19 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16 24 C 0.12 4.28 6.42 86.36 0.55 4.83 16 25 H 0.11 1.12 8.06 -2.91 -0.02 1.09 16 26 H 0.10 1.22 7.84 -2.91 -0.02 1.20 16 27 H 0.12 1.59 8.06 -2.91 -0.02 1.56 16 28 H 0.07 1.40 7.79 -2.39 -0.02 1.39 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 31 H 0.07 1.19 8.00 -2.39 -0.02 1.17 16 32 H 0.09 1.48 8.00 -2.39 -0.02 1.46 16 33 H 0.08 1.69 5.97 -2.39 -0.01 1.68 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.10 2.65 4.73 -2.39 -0.01 2.64 16 37 H 0.08 3.94 6.05 -2.39 -0.01 3.92 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 43 H 0.08 2.82 7.03 -2.38 -0.02 2.81 16 44 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -64.00 350.38 4.91 -59.09 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.95 Total: 16.36 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.12 Total: -10.49 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.19 Total: -71.91 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.99 Total: -37.20 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -64.00 4.91 -59.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541048530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.364 kcal (2) G-P(sol) polarization free energy of solvation -64.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds