Wall clock time and date at job start Tue Mar 31 2020 05:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00253 * 2 1 4 4 C 1.53007 * 109.46900 * 125.00018 * 3 2 1 5 5 O 1.42901 * 109.46911 * 180.02562 * 4 3 2 6 6 C 1.42900 * 114.00024 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47099 * 329.99169 * 6 5 4 8 8 C 1.52996 * 109.47498 * 89.99579 * 6 5 4 9 9 C 1.50702 * 109.46866 * 209.99880 * 6 5 4 10 10 O 1.21286 * 120.00223 * 344.39954 * 9 6 5 11 11 N 1.34775 * 120.00060 * 164.40338 * 9 6 5 12 12 C 1.46930 * 120.62888 * 4.11852 * 11 9 6 13 13 C 1.53623 * 108.54426 * 126.37246 * 12 11 9 14 14 C 1.53040 * 109.24491 * 54.85244 * 13 12 11 15 15 C 1.50697 * 109.44747 * 178.50074 * 14 13 12 16 16 H 1.07999 * 120.00121 * 120.06434 * 15 14 13 17 17 C 1.37881 * 119.99927 * 300.05945 * 15 14 13 18 18 N 1.31509 * 119.99959 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99816 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47334 * 90.00179 * 19 17 15 21 21 H 1.48502 * 109.47042 * 209.99875 * 19 17 15 22 22 H 1.48501 * 109.47454 * 329.99747 * 19 17 15 23 23 C 1.53040 * 109.53673 * 298.51287 * 14 13 12 24 24 C 1.46928 * 120.63463 * 184.39545 * 11 9 6 25 25 H 1.07996 * 120.00083 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99707 * 0.02562 * 1 2 3 27 27 H 1.08007 * 119.99946 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47186 * 5.00058 * 3 2 1 29 29 H 1.09004 * 109.47424 * 244.99522 * 3 2 1 30 30 H 1.09000 * 109.46903 * 299.99511 * 4 3 2 31 31 H 1.08997 * 109.47169 * 60.00030 * 4 3 2 32 32 H 1.08998 * 109.47378 * 61.44338 * 8 6 5 33 33 H 1.09004 * 109.47047 * 181.44643 * 8 6 5 34 34 H 1.08998 * 109.46848 * 301.44800 * 8 6 5 35 35 H 1.09004 * 109.58252 * 246.20268 * 12 11 9 36 36 H 1.08994 * 109.58576 * 6.62469 * 12 11 9 37 37 H 1.09002 * 109.62986 * 294.85981 * 13 12 11 38 38 H 1.08999 * 109.42787 * 174.72573 * 13 12 11 39 39 H 1.08992 * 109.45792 * 58.53451 * 14 13 12 40 40 H 0.97001 * 119.99868 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.49802 * 301.41404 * 23 14 13 42 42 H 1.09004 * 109.49606 * 181.31847 * 23 14 13 43 43 H 1.09006 * 109.58243 * 353.37382 * 24 11 9 44 44 H 1.08996 * 109.58652 * 113.65070 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 8 3.7492 2.5707 1.1820 6 6 4.6887 2.6994 2.2511 7 1 4.3367 2.1343 3.1141 8 6 6.0471 2.1552 1.8047 9 6 4.8280 4.1526 2.6251 10 8 4.4211 5.0138 1.8743 11 7 5.4047 4.4953 3.7940 12 6 5.9832 3.4694 4.6725 13 6 7.4363 3.8572 4.9857 14 6 7.4665 5.2722 5.5678 15 6 8.8861 5.6434 5.9111 16 1 9.3491 6.4988 5.4418 17 6 9.5938 4.8909 6.8243 18 7 9.0301 3.8491 7.3954 19 14 11.3533 5.3515 7.2503 20 1 11.3544 6.2928 8.3988 21 1 12.1114 4.1272 7.6131 22 1 11.9929 6.0004 6.0777 23 6 6.9157 6.2611 4.5378 24 6 5.4617 5.9012 4.2170 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 2.4772 1.2355 2.1130 31 1 3.7400 0.5064 1.0921 32 1 6.4110 2.7368 0.9577 33 1 6.7570 2.2298 2.6285 34 1 5.9411 1.1112 1.5097 35 1 5.4092 3.4146 5.5976 36 1 5.9618 2.5029 4.1690 37 1 8.0286 3.8272 4.0712 38 1 7.8502 3.1565 5.7109 39 1 6.8540 5.3074 6.4687 40 1 9.5281 3.3195 8.0376 41 1 7.5129 6.2086 3.6275 42 1 6.9592 7.2716 4.9442 43 1 5.0961 6.5398 3.4127 44 1 4.8441 6.0413 5.1041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541048531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:58 Heat of formation + Delta-G solvation = -74.550406 kcal Electronic energy + Delta-G solvation = -22534.252465 eV Core-core repulsion = 19258.778418 eV Total energy + Delta-G solvation = -3275.474047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01371 -38.07394 -36.64800 -35.26055 -33.61296 -32.15739 -30.78592 -29.94903 -29.04935 -26.40766 -24.43154 -23.19175 -22.63885 -22.10229 -20.26396 -19.84200 -18.30633 -17.29594 -16.57364 -16.19973 -16.11718 -15.37247 -15.06688 -14.60881 -14.55172 -13.92609 -13.91433 -13.31489 -13.21155 -12.90440 -12.87686 -12.66764 -12.17066 -12.04443 -11.88030 -11.68156 -11.55326 -11.38097 -11.27054 -11.06135 -10.97543 -10.65275 -10.41685 -10.14318 -9.85061 -9.67362 -9.65257 -9.21257 -9.17847 -8.93371 -8.41085 -8.02223 -6.06580 -4.12425 1.94245 2.92960 3.05729 3.26154 3.33338 3.37054 3.91367 4.38371 4.65599 4.73096 4.81902 4.90315 4.96797 5.10077 5.18520 5.22914 5.24238 5.49262 5.55811 5.63372 5.67202 5.71634 5.80760 5.84653 5.92940 6.01918 6.13624 6.16656 6.25093 6.32380 6.42577 6.45671 6.63344 6.85105 6.98218 7.07343 7.13625 7.25296 7.62926 7.88261 7.88780 8.00158 8.36950 8.55655 8.91048 9.52853 10.98963 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033848 B = 0.003282 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.017730 B = 8530.281533 C = 8938.350771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.093 4.093 4 C 0.063 3.937 5 O -0.359 6.359 6 C 0.075 3.925 7 H 0.082 0.918 8 C -0.175 4.175 9 C 0.513 3.487 10 O -0.539 6.539 11 N -0.599 5.599 12 C 0.095 3.905 13 C -0.123 4.123 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.113 3.887 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.522 -8.595 -9.218 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.171 4.171 3 C -0.130 4.130 4 C -0.014 4.014 5 O -0.278 6.278 6 C 0.014 3.986 7 H 0.100 0.900 8 C -0.232 4.232 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.333 5.333 12 C -0.026 4.026 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.009 4.009 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.123 0.877 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.725 -8.127 -9.623 17.208 hybrid contribution 1.096 -0.172 0.597 1.260 sum -10.629 -8.299 -9.026 16.227 Atomic orbital electron populations 1.23903 0.95910 1.02024 1.00816 1.22823 0.96022 0.98041 1.00169 1.20640 0.97976 0.95817 0.98577 1.22517 0.93846 0.86621 0.98370 1.88013 1.54344 1.37024 1.48390 1.21888 0.91246 0.94629 0.90882 0.90029 1.22330 0.95772 1.01493 1.03632 1.20239 0.78209 0.90237 0.81331 1.90652 1.49471 1.51279 1.50167 1.48183 1.56722 1.08989 1.19396 1.22294 0.97758 0.89557 0.93039 1.22102 0.90678 1.02550 1.00810 1.18634 0.95973 0.89872 0.92544 1.21208 0.97880 1.12383 1.23445 0.92673 1.24956 0.98098 0.95049 0.95867 1.69827 1.36973 1.17590 1.28763 0.86616 0.84869 0.77911 0.78740 1.20713 1.21254 1.19977 1.22007 0.93108 1.00437 1.00587 1.21701 0.98871 0.80954 0.99359 0.88352 0.88401 0.87178 0.90510 0.89984 0.93187 0.93049 0.91117 0.89802 0.91504 0.91811 0.91244 0.94088 0.87709 0.95425 0.92977 0.92882 0.92092 0.90319 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 14.32 29.01 0.42 -0.99 16 2 C -0.15 -1.22 9.52 -36.03 -0.34 -1.56 16 3 C -0.09 -0.90 6.03 -27.88 -0.17 -1.07 16 4 C 0.06 0.69 5.73 37.16 0.21 0.90 16 5 O -0.36 -5.39 9.57 -54.64 -0.52 -5.91 16 6 C 0.07 1.09 2.28 -27.88 -0.06 1.03 16 7 H 0.08 1.02 6.92 -51.93 -0.36 0.66 16 8 C -0.17 -2.27 9.17 37.16 0.34 -1.93 16 9 C 0.51 9.40 7.00 -10.99 -0.08 9.33 16 10 O -0.54 -11.72 15.99 -13.86 -0.22 -11.94 16 11 N -0.60 -10.79 2.97 -172.50 -0.51 -11.31 16 12 C 0.10 1.64 5.72 -3.48 -0.02 1.62 16 13 C -0.12 -2.61 5.17 -26.39 -0.14 -2.75 16 14 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 15 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.96 11.30 55.43 0.63 -23.34 16 19 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 24 C 0.11 2.08 6.44 -3.71 -0.02 2.06 16 25 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 26 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 27 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 28 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.05 0.48 7.84 -51.93 -0.41 0.07 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.11 6.07 -51.93 -0.32 0.80 16 34 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.00 4.34 -51.93 -0.23 0.78 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.47 7.00 -51.93 -0.36 1.10 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -29.77 350.34 -8.35 -38.12 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.40 Total: 0.77 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.58 Total: -7.26 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.11 Total: -34.64 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.74 Total: -17.85 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.77 -8.35 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541048531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.427 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds