Wall clock time and date at job start Tue Mar 31 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99811 * 2 1 4 4 C 1.53001 * 109.47240 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46891 * 183.32360 * 4 3 2 6 6 C 1.50708 * 115.55012 * 303.72666 * 5 4 3 7 7 O 1.21278 * 119.99954 * 112.15714 * 6 5 4 8 8 N 1.34779 * 119.99610 * 292.15504 * 6 5 4 9 9 C 1.46930 * 120.62410 * 174.48775 * 8 6 5 10 10 C 1.53187 * 108.77237 * 233.62861 * 9 8 6 11 11 C 1.53038 * 109.31652 * 305.36543 * 10 9 8 12 12 C 1.50699 * 109.46227 * 181.38504 * 11 10 9 13 13 H 1.07999 * 120.00105 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00198 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99885 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00159 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47275 * 59.99585 * 16 14 12 18 18 H 1.48508 * 109.47076 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47097 * 299.99332 * 16 14 12 20 20 C 1.53045 * 109.53734 * 61.36753 * 11 10 9 21 21 C 1.46916 * 120.63300 * 354.51042 * 8 6 5 22 22 C 1.53000 * 117.50043 * 89.40052 * 5 4 3 23 23 C 1.53005 * 117.49861 * 158.06072 * 5 4 3 24 24 H 1.08992 * 109.47528 * 300.00121 * 1 2 3 25 25 H 1.08999 * 109.47020 * 60.00381 * 1 2 3 26 26 H 1.09006 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46901 * 59.99750 * 3 2 1 28 28 H 1.09002 * 109.46990 * 300.00190 * 3 2 1 29 29 H 1.08997 * 109.46899 * 63.32330 * 4 3 2 30 30 H 1.08993 * 109.46989 * 303.32142 * 4 3 2 31 31 H 1.08998 * 109.58214 * 113.84623 * 9 8 6 32 32 H 1.08994 * 109.59000 * 353.41561 * 9 8 6 33 33 H 1.09006 * 109.49700 * 185.41382 * 10 9 8 34 34 H 1.09005 * 109.50258 * 65.32024 * 10 9 8 35 35 H 1.08996 * 109.46236 * 301.34577 * 11 10 9 36 36 H 0.96997 * 120.00218 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.49727 * 58.58517 * 20 11 10 38 38 H 1.09002 * 109.50228 * 178.68417 * 20 11 10 39 39 H 1.09003 * 109.58930 * 246.15355 * 21 8 6 40 40 H 1.08997 * 109.59252 * 6.58295 * 21 8 6 41 41 H 1.09006 * 117.49497 * 215.00259 * 22 5 4 42 42 H 1.08998 * 117.49766 * 0.02562 * 22 5 4 43 43 H 1.09002 * 117.49312 * 359.97415 * 23 5 4 44 44 H 1.08992 * 117.49860 * 144.99527 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5802 0.0843 6 6 3.7375 3.5447 -0.9949 7 8 3.0579 4.5095 -0.7151 8 7 4.1172 3.3351 -2.2710 9 6 3.6180 4.1964 -3.3516 10 6 2.9967 3.3137 -4.4385 11 6 4.0207 2.2695 -4.8893 12 6 3.4244 1.4209 -5.9826 13 1 2.4164 1.6077 -6.3222 14 6 4.1658 0.4058 -6.5493 15 7 5.3935 0.1786 -6.1361 16 14 3.4269 -0.6456 -7.9050 17 1 3.0607 0.2173 -9.0567 18 1 4.4204 -1.6590 -8.3425 19 1 2.2126 -1.3308 -7.3938 20 6 4.4006 1.3799 -3.7033 21 6 5.0378 2.2408 -2.6079 22 6 4.4248 3.1521 1.4779 23 6 5.5922 2.6840 0.6054 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8615 0.6960 -0.9174 30 1 3.8527 0.5935 0.8596 31 1 4.4440 4.7688 -3.7737 32 1 2.8630 4.8766 -2.9575 33 1 2.7090 3.9319 -5.2889 34 1 2.1158 2.8107 -4.0393 35 1 4.9112 2.7730 -5.2655 36 1 5.9152 -0.5352 -6.5350 37 1 3.5065 0.8952 -3.3110 38 1 5.1122 0.6218 -4.0303 39 1 5.9796 2.6538 -2.9695 40 1 5.2197 1.6307 -1.7232 41 1 4.2970 4.2260 1.6142 42 1 4.1581 2.5340 2.3352 43 1 6.0928 1.7582 0.8890 44 1 6.2323 3.4499 0.1677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541974328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:22 Heat of formation + Delta-G solvation = -68.849991 kcal Electronic energy + Delta-G solvation = -23573.317491 eV Core-core repulsion = 20298.090633 eV Total energy + Delta-G solvation = -3275.226858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29339 -37.89895 -37.18163 -36.29066 -33.47737 -31.32480 -30.93060 -30.04912 -26.64944 -26.28694 -24.17887 -23.21881 -22.48945 -22.22258 -21.48443 -19.43378 -17.99454 -16.70614 -16.38680 -16.26098 -15.97258 -15.56760 -14.97104 -14.77446 -14.55238 -14.26085 -13.59187 -13.41720 -13.09794 -12.78557 -12.72347 -12.45830 -12.10031 -11.96951 -11.66828 -11.57560 -11.39251 -11.27087 -11.12293 -10.92460 -10.67625 -10.50341 -10.39218 -10.09344 -10.00227 -9.66009 -9.58799 -9.33941 -9.18777 -8.91138 -8.37904 -8.00608 -6.03170 -4.09272 2.86889 3.29832 3.34372 3.34947 3.37689 3.59376 3.90462 4.40877 4.65166 4.76072 4.84292 4.95621 5.19394 5.26565 5.31905 5.38365 5.51306 5.52931 5.58554 5.62818 5.67004 5.75038 5.80615 5.86870 5.93445 6.04355 6.07358 6.08863 6.12905 6.17710 6.34038 6.45377 6.65234 6.87611 7.03179 7.14870 7.20249 7.28134 7.65960 7.91565 7.92519 8.03969 8.39807 8.54113 8.93561 9.55788 11.02326 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.005595 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.628535 B = 5003.251904 C = 5750.868538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.078 4.078 5 C -0.151 4.151 6 C 0.546 3.454 7 O -0.557 6.557 8 N -0.592 5.592 9 C 0.111 3.889 10 C -0.123 4.123 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.124 4.124 21 C 0.101 3.899 22 C -0.147 4.147 23 C -0.156 4.156 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.590 2.027 13.211 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.010 4.010 4 C -0.115 4.115 5 C -0.154 4.154 6 C 0.334 3.666 7 O -0.437 6.437 8 N -0.324 5.324 9 C -0.011 4.011 10 C -0.161 4.161 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.162 4.162 21 C -0.021 4.021 22 C -0.185 4.185 23 C -0.193 4.193 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.673 2.245 13.283 13.575 hybrid contribution -0.573 -0.470 -0.902 1.168 sum -2.246 1.776 12.380 12.707 Atomic orbital electron populations 1.22711 0.81116 1.02539 0.99973 1.87835 1.19675 1.28035 1.95456 1.22436 0.93663 0.84408 1.00543 1.21065 0.93309 0.92695 1.04467 1.21278 1.01299 0.96802 0.96012 1.19433 0.79624 0.84815 0.82767 1.90629 1.40248 1.30679 1.82126 1.48174 1.46090 1.32206 1.05888 1.21718 0.98685 0.92971 0.87716 1.22011 0.99826 0.98235 0.96033 1.18625 0.93741 0.91841 0.92712 1.21151 0.99994 1.15375 1.18511 0.92832 1.24944 0.94830 0.97252 0.96829 1.69822 1.08990 1.31838 1.42396 0.86688 0.78913 0.80156 0.82421 1.20346 1.21289 1.20336 1.22027 1.00711 0.99511 0.93954 1.22140 0.92012 0.88150 0.99824 1.23033 1.01168 1.02062 0.92200 1.23096 0.89748 1.03753 1.02692 0.94364 0.93909 0.89706 0.93279 0.93120 0.89211 0.90217 0.92153 0.90512 0.92135 0.93076 0.95499 0.92917 0.94158 0.87767 0.92085 0.90768 0.88021 0.88053 0.87668 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.93 10.70 -35.23 -0.38 -6.31 16 3 C 0.07 0.98 5.65 37.16 0.21 1.19 16 4 C -0.08 -1.07 5.20 -26.73 -0.14 -1.21 16 5 C -0.15 -2.10 0.84 -155.65 -0.13 -2.23 16 6 C 0.55 9.56 6.00 -10.98 -0.07 9.49 16 7 O -0.56 -11.22 16.20 5.56 0.09 -11.13 16 8 N -0.59 -10.65 2.97 -172.77 -0.51 -11.16 16 9 C 0.11 2.04 6.42 -3.71 -0.02 2.02 16 10 C -0.12 -2.51 5.30 -26.62 -0.14 -2.65 16 11 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 12 C -0.51 -13.58 8.56 -34.44 -0.29 -13.87 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.30 11.30 55.43 0.63 -23.67 16 16 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.12 -2.70 5.15 -26.61 -0.14 -2.83 16 21 C 0.10 1.79 5.79 -3.71 -0.02 1.77 16 22 C -0.15 -1.71 9.76 -26.69 -0.26 -1.97 16 23 C -0.16 -1.75 9.23 -26.69 -0.25 -2.00 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.85 7.59 -51.93 -0.39 0.46 16 29 H 0.09 1.37 6.32 -51.93 -0.33 1.04 16 30 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.41 7.04 -51.93 -0.37 1.04 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 2.54 6.03 -51.93 -0.31 2.22 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.16 4.35 -51.93 -0.23 0.94 16 41 H 0.10 1.26 8.04 -51.93 -0.42 0.84 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -29.36 347.67 -7.88 -37.24 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.50 Total: 2.21 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.42 Total: -8.24 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.11 Total: -34.83 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.29 Total: -17.44 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.36 -7.88 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541974328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.611 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds