Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00383 * 2 1 4 4 C 1.53002 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.50699 * 112.84905 * 294.76097 * 4 3 2 6 6 O 1.21284 * 120.00325 * 103.94101 * 5 4 3 7 7 N 1.34778 * 119.99946 * 283.93443 * 5 4 3 8 8 C 1.46924 * 120.63257 * 4.91607 * 7 5 4 9 9 C 1.53622 * 108.54962 * 126.36656 * 8 7 5 10 10 C 1.53046 * 109.24283 * 54.85094 * 9 8 7 11 11 C 1.50693 * 109.46081 * 178.49389 * 10 9 8 12 12 H 1.07996 * 119.99867 * 120.07343 * 11 10 9 13 13 C 1.37881 * 120.00247 * 300.06924 * 11 10 9 14 14 N 1.31514 * 119.99828 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00088 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47081 * 60.00499 * 15 13 11 17 17 H 1.48496 * 109.47317 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47426 * 300.00366 * 15 13 11 19 19 C 1.53040 * 109.54065 * 298.52034 * 10 9 8 20 20 C 1.46932 * 120.63146 * 185.19074 * 7 5 4 21 21 C 1.53781 * 113.69311 * 66.02841 * 4 3 2 22 22 C 1.53782 * 87.07717 * 89.12656 * 21 4 3 23 23 C 1.53775 * 87.08367 * 25.43370 * 22 21 4 24 24 H 1.08995 * 109.47098 * 59.99360 * 1 2 3 25 25 H 1.08997 * 109.47686 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46707 * 299.99854 * 1 2 3 27 27 H 1.08994 * 109.47141 * 60.00308 * 3 2 1 28 28 H 1.08999 * 109.47467 * 300.00231 * 3 2 1 29 29 H 1.09000 * 109.58764 * 246.19831 * 8 7 5 30 30 H 1.09001 * 109.58364 * 6.61994 * 8 7 5 31 31 H 1.09005 * 109.63129 * 294.87101 * 9 8 7 32 32 H 1.08993 * 109.43441 * 174.72674 * 9 8 7 33 33 H 1.09001 * 109.45053 * 58.53544 * 10 9 8 34 34 H 0.96995 * 120.00112 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.49433 * 301.41104 * 19 10 9 36 36 H 1.08994 * 109.49573 * 181.31145 * 19 10 9 37 37 H 1.09002 * 109.58510 * 353.37656 * 20 7 5 38 38 H 1.08998 * 109.58620 * 113.79967 * 20 7 5 39 39 H 1.09001 * 113.61427 * 203.67378 * 21 4 3 40 40 H 1.09000 * 113.61147 * 334.57982 * 21 4 3 41 41 H 1.09000 * 113.61331 * 270.87989 * 22 21 4 42 42 H 1.09003 * 113.61066 * 139.98324 * 22 21 4 43 43 H 1.08997 * 113.61620 * 220.01801 * 23 22 21 44 44 H 1.09005 * 113.69244 * 89.12509 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.0734 0.5581 1.2601 6 8 4.4522 -0.5941 1.2511 7 7 4.1337 1.2783 2.3977 8 6 3.5807 2.6384 2.4528 9 6 2.5965 2.7185 3.6296 10 6 3.3060 2.2764 4.9116 11 6 2.3555 2.3883 6.0756 12 1 2.1049 1.5116 6.6543 13 6 1.8059 3.6100 6.4019 14 7 2.1108 4.6776 5.6969 15 14 0.6272 3.7486 7.8443 16 1 1.3154 3.3210 9.0888 17 1 0.1800 5.1576 7.9846 18 1 -0.5514 2.8770 7.6060 19 6 3.7664 0.8241 4.7670 20 6 4.7589 0.7205 3.6047 21 6 4.1058 0.5654 -1.2877 22 6 4.1657 1.9938 -1.8544 23 6 4.2563 2.4830 -0.3993 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6888 1.8463 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 4.3884 3.3556 2.5991 30 1 3.0582 2.8584 1.5219 31 1 1.7456 2.0639 3.4406 32 1 2.2484 3.7452 3.7420 33 1 4.1712 2.9159 5.0866 34 1 1.7239 5.5369 5.9262 35 1 2.9045 0.1874 4.5672 36 1 4.2509 0.5026 5.6889 37 1 5.0139 -0.3254 3.4340 38 1 5.6608 1.2844 3.8429 39 1 5.0857 0.1070 -1.1548 40 1 3.4016 -0.0823 -1.8099 41 1 3.2514 2.3008 -2.3622 42 1 5.0636 2.1942 -2.4391 43 1 3.6736 3.3833 -0.2043 44 1 5.2769 2.5494 -0.0223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552418192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = -66.288640 kcal Electronic energy + Delta-G solvation = -23845.519990 eV Core-core repulsion = 20570.404201 eV Total energy + Delta-G solvation = -3275.115790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73921 -38.18963 -37.05869 -36.46576 -33.47446 -31.32432 -30.15197 -28.88016 -26.61022 -25.98790 -25.57179 -24.25508 -22.82144 -22.17411 -20.39030 -18.94228 -18.14101 -17.08707 -16.29723 -16.18412 -15.85301 -15.59297 -15.20070 -14.56651 -14.36978 -14.19328 -13.69900 -13.18764 -12.89155 -12.78452 -12.57688 -12.32846 -12.29156 -12.06891 -11.91486 -11.49217 -11.29666 -11.27014 -11.11691 -10.93184 -10.67357 -10.46369 -10.37727 -10.30153 -10.09076 -9.65059 -9.62409 -9.16569 -9.12302 -8.85967 -8.38605 -7.92449 -6.04430 -4.10282 3.07735 3.28496 3.33038 3.36501 3.49227 3.69773 4.39654 4.43194 4.65122 4.70289 4.87472 5.00016 5.21456 5.24900 5.36273 5.41331 5.42722 5.50837 5.61203 5.70350 5.72837 5.76527 5.82258 5.85981 5.99786 6.05557 6.10392 6.17200 6.19172 6.29799 6.34582 6.49375 6.68635 6.93834 7.05495 7.17092 7.18060 7.28482 7.65542 7.91451 8.00516 8.04258 8.39682 8.69041 8.92897 9.54619 11.01025 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.005090 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.753447 B = 5499.893776 C = 5792.988559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.086 3.914 4 C -0.102 4.102 5 C 0.532 3.468 6 O -0.551 6.551 7 N -0.599 5.599 8 C 0.099 3.901 9 C -0.123 4.123 10 C 0.049 3.951 11 C -0.511 4.511 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.123 4.123 20 C 0.112 3.888 21 C -0.105 4.105 22 C -0.144 4.144 23 C -0.122 4.122 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -2.055 -13.860 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.009 3.991 4 C -0.105 4.105 5 C 0.319 3.681 6 O -0.429 6.429 7 N -0.332 5.332 8 C -0.023 4.023 9 C -0.161 4.161 10 C 0.031 3.969 11 C -0.549 4.549 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.161 4.161 20 C -0.011 4.011 21 C -0.142 4.142 22 C -0.181 4.181 23 C -0.159 4.159 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.196 -2.628 -13.846 14.144 hybrid contribution -1.015 0.488 0.971 1.487 sum 0.181 -2.140 -12.875 13.053 Atomic orbital electron populations 1.22746 0.81036 1.02749 0.99995 1.87952 1.19501 1.27054 1.95365 1.22299 0.90205 0.85463 1.01151 1.22004 0.94894 0.98934 0.94694 1.20090 0.78137 0.85771 0.84065 1.90614 1.50034 1.17037 1.85208 1.48183 1.57875 1.16603 1.10508 1.22280 0.97738 0.81641 1.00650 1.22094 0.96165 1.04501 0.93367 1.18619 0.95654 0.89717 0.92910 1.21179 1.26557 0.94056 1.13130 0.92786 1.24948 0.96583 0.95848 0.96536 1.69823 1.44450 0.99328 1.39590 0.86683 0.81429 0.76903 0.83140 1.20290 1.21312 1.20374 1.21995 0.97639 1.01004 0.95453 1.21674 0.95707 0.98926 0.84748 1.22708 1.01773 0.96201 0.93550 1.22904 1.02231 0.96855 0.96122 1.23044 1.01107 0.95599 0.96162 0.94295 0.89667 0.93715 0.91719 0.92395 0.92098 0.91177 0.94431 0.87869 0.95492 0.92956 0.92996 0.92262 0.90453 0.92367 0.89437 0.90537 0.90023 0.90993 0.90206 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.97 10.39 -35.23 -0.37 -6.34 16 3 C 0.09 1.20 4.78 37.16 0.18 1.37 16 4 C -0.10 -1.48 0.41 -154.85 -0.06 -1.54 16 5 C 0.53 9.87 6.48 -10.99 -0.07 9.80 16 6 O -0.55 -11.98 15.85 5.55 0.09 -11.89 16 7 N -0.60 -11.13 2.97 -172.50 -0.51 -11.64 16 8 C 0.10 1.76 5.20 -3.49 -0.02 1.74 16 9 C -0.12 -2.69 5.17 -26.38 -0.14 -2.83 16 10 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 11 C -0.51 -13.62 8.56 -34.44 -0.29 -13.91 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 14 N -0.89 -24.21 11.30 55.43 0.63 -23.59 16 15 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 20 C 0.11 2.13 6.44 -3.71 -0.02 2.10 16 21 C -0.10 -1.35 6.82 -25.92 -0.18 -1.53 16 22 C -0.14 -1.43 7.73 -25.92 -0.20 -1.63 16 23 C -0.12 -1.41 5.53 -25.92 -0.14 -1.55 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.96 6.34 -51.93 -0.33 0.63 16 28 H 0.06 0.65 7.31 -51.93 -0.38 0.27 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.08 3.24 -51.93 -0.17 0.91 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.21 7.92 -51.93 -0.41 0.79 16 40 H 0.08 1.00 8.00 -51.93 -0.42 0.58 16 41 H 0.08 0.71 7.61 -51.93 -0.40 0.32 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.84 7.17 -51.93 -0.37 0.47 16 44 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -30.31 338.36 -7.69 -37.99 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.34 Total: 1.29 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.26 Total: -6.68 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.11 Total: -35.23 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.28 Total: -18.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.31 -7.69 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552418192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.295 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds